Clone IP20080 Report

Search the DGRC for IP20080

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:200
Well:80
Vector:pOT2
Associated Gene/TranscriptCG14507-RC
Protein status:IP20080.pep: gold
Sequenced Size:1252

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14507 2008-05-05 Release 5.5 slip selected
CG14507 2008-08-15 Release 5.9 accounting
CG14507 2008-12-18 5.12 accounting

Clone Sequence Records

IP20080.complete Sequence

1252 bp assembled on 2008-05-14

GenBank Submission: BT032920

> IP20080.complete
AGCAGTTCGGCGCAGAGTGGTGGTCAGCTTGAGTTCCTGGATGCGAACAT
GTTGTGGATAATGGGGCTAGTAGTGGCCGCTGTGCGGCTCAATGGACAGG
CGAGCGGTGCGGCAAATGTCACGGTAATCGAAGACATTAGGAGCGCCTTC
AGAGGCGTCACCAACGACACGGAGCTGCTGAATCACATAATACCGGAAAT
GTACGGGGCGAGCATGCGCAGTGCGAATCCCTCCTTTGTCTTCAAAATGC
CTAGCAAATCGAACGGCGGTGGCGACGACTTCGAGCTGCTAACAATGCAG
CGATCCGATTTCGCGGAACCAATCTTCCCCAATATCAGCCAGTCGGCCAC
GGCCATCGATTCACCCAGTACCATTCCGCCGGAAACGAGCGTGAAGACCA
GTCTCATGGTATCGCCGCAACAGGATTGGCAGCAGATGGGTCTGGATGGC
TGGACGGGGGAGCTGAAGCCACCAGTAGCCTCGCTGGAGCAGGATCATAG
GGACACTCGACCGCCGATCAGCTGGCAGAACTCGTATCCCCACGACGAGA
TTCGTCTGGAGTTCCAGAACCACCACTTCGATGGCCGGGTGACGGACATA
CGCGTGATAACACAAACAACTAGTAAACCAGCTGAGATGGAGGACCTGAT
GAATGTTCAGAATGTGTACATAGCGCGGGTAAACGATCCCTTCGGTTACT
CCATGAAGTGGAGCTTCACCAACGACAGCAGCCGGGAAAAAGAGCTTTTG
CCGGAGGGAGATCGCGGAAAGAGGGACGTTGCTCGGCTGTACTCCATGAT
CAAGTGCTCCACGGGCTGTGATCCGCTGATCTACAAGGGCTACGGCTGCT
ACTGCGGATTCGGTGGCCACGGAGTGCCCGCCGATGGCATCGATCGCTGT
TGTCGCGTGCACGACAAGTGCTACGGTCAGAGCAACTGCATCTCCTATCT
GGAATACTTTGTGCCCTACGTGTGGAAGTGCTACCGCGGCAAGCCGCTGT
GCGCCGTCGATCATGGCGAGTTCGGTGGCCCCGACTCCTGTGCCGCTCGT
CTCTGCCAATGCGACCTGCGGCTTTCCAGGTGCCTCAAGAGGTACTACTG
CCCACACCGACGCTCCATTTGCCACTCGTCCAGATCTCGACGCTTACAGA
ACCTAATATTCTTCGATTGATGTTTATTGTTAATGCATGTAGCATGTAAG
TTCCAAAATGAAATGCATAAATGAATACGTGTGAAAAAAAAAAAAAAAAA
AA

IP20080.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14507.a 1472 CG14507.a 159..1395 1..1237 6185 100 Plus
CG14507-RC 1472 CG14507-RC 159..1395 1..1237 6185 100 Plus
Brd8-RA 2794 Brd8-RA 2710..2794 1237..1153 425 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25048969..25049703 1233..499 3630 99.6 Minus
chr3R 27901430 chr3R 25049990..25050490 501..1 2460 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:41:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29226200..29226938 1237..499 3695 100 Minus
3R 32079331 3R 29227225..29227725 501..1 2505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28967031..28967769 1237..499 3695 100 Minus
3R 31820162 3R 28968056..28968556 501..1 2505 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:32:00 has no hits.

IP20080.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:33:02 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25048969..25049701 501..1233 99 <- Minus
chr3R 25049991..25050490 1..500 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:18:26 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:53:15 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:28:59 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:52:34 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:20:19 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:16:20 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:53:15 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:59 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:52:34 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1122 49..1170 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:19 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
CG14507-RC 1..1233 1..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:02 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29227226..29227725 1..500 100   Minus
3R 29226204..29226936 501..1233 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:02 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29227226..29227725 1..500 100   Minus
3R 29226204..29226936 501..1233 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:02 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29227226..29227725 1..500 100   Minus
3R 29226204..29226936 501..1233 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:59 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25051926..25052658 501..1233 100 <- Minus
arm_3R 25052948..25053447 1..500 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:30:55 Download gff for IP20080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28967035..28967767 501..1233 100 <- Minus
3R 28968057..28968556 1..500 100   Minus

IP20080.hyp Sequence

Translation from 0 to 1169

> IP20080.hyp
SSSAQSGGQLEFLDANMLWIMGLVVAAVRLNGQASGAANVTVIEDIRSAF
RGVTNDTELLNHIIPEMYGASMRSANPSFVFKMPSKSNGGGDDFELLTMQ
RSDFAEPIFPNISQSATAIDSPSTIPPETSVKTSLMVSPQQDWQQMGLDG
WTGELKPPVASLEQDHRDTRPPISWQNSYPHDEIRLEFQNHHFDGRVTDI
RVITQTTSKPAEMEDLMNVQNVYIARVNDPFGYSMKWSFTNDSSREKELL
PEGDRGKRDVARLYSMIKCSTGCDPLIYKGYGCYCGFGGHGVPADGIDRC
CRVHDKCYGQSNCISYLEYFVPYVWKCYRGKPLCAVDHGEFGGPDSCAAR
LCQCDLRLSRCLKRYYCPHRRSICHSSRSRRLQNLIFFD*

IP20080.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14507-PC 373 CG14507-PC 1..373 17..389 2037 100 Plus

IP20080.pep Sequence

Translation from 0 to 1169

> IP20080.pep
SSSAQSGGQLEFLDANMLWIMGLVVAAVRLNGQASGAANVTVIEDIRSAF
RGVTNDTELLNHIIPEMYGASMRSANPSFVFKMPSKSNGGGDDFELLTMQ
RSDFAEPIFPNISQSATAIDSPSTIPPETSVKTSLMVSPQQDWQQMGLDG
WTGELKPPVASLEQDHRDTRPPISWQNSYPHDEIRLEFQNHHFDGRVTDI
RVITQTTSKPAEMEDLMNVQNVYIARVNDPFGYSMKWSFTNDSSREKELL
PEGDRGKRDVARLYSMIKCSTGCDPLIYKGYGCYCGFGGHGVPADGIDRC
CRVHDKCYGQSNCISYLEYFVPYVWKCYRGKPLCAVDHGEFGGPDSCAAR
LCQCDLRLSRCLKRYYCPHRRSICHSSRSRRLQNLIFFD*

IP20080.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16607-PA 365 GF16607-PA 1..365 17..389 1481 77.3 Plus
Dana\GF23345-PA 328 GF23345-PA 1..304 17..317 947 64.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12026-PA 410 GG12026-PA 21..410 6..389 1858 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14304-PA 310 GH14304-PA 1..310 67..389 1091 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14507-PC 373 CG14507-PC 1..373 17..389 2037 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10401-PA 379 GI10401-PA 31..379 10..389 1206 64.5 Plus
Dmoj\GI11267-PA 625 GI11267-PA 31..305 10..315 809 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13881-PA 436 GL13881-PA 1..337 17..341 1159 68.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26956-PA 362 GA26956-PA 1..362 17..389 1331 70.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12251-PA 376 GM12251-PA 1..376 17..389 1949 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17895-PA 313 GD17895-PA 1..313 17..326 1516 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14514-PA 341 GJ14514-PA 18..341 42..389 1130 65.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22672-PA 373 GK22672-PA 22..373 39..389 1310 70 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10464-PA 381 GE10464-PA 1..381 17..389 1779 90.6 Plus