Clone IP20181 Report

Search the DGRC for IP20181

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:201
Well:81
Vector:pOT2
Associated Gene/TranscriptPIG-C-RB
Protein status:IP20181.pep: gold
Sequenced Size:1123

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12077 2008-05-05 Release 5.5 slip selected
CG12077 2008-08-15 Release 5.9 accounting
CG12077 2008-12-18 5.12 accounting

Clone Sequence Records

IP20181.complete Sequence

1123 bp assembled on 2008-05-22

GenBank Submission: BT032923

> IP20181.complete
CACTAATAGAATTGTAAACAAACAATTTTTAAATTTAAGAATGGTAAAAA
ATGGGCAATCGAAACGGCAGCCATGGGTGAAGAACCTGTACTCCAACCGG
GAATATCCGGACAACTACACGGATGCCAGCTTTCTGAAGGATCTGCGCAC
GAATCTACATTGTAGAATATACACGTTCGGCGAAGCAATTGCCGGTATTA
CAGTGCTTAATAATCAGATCTCCTGCATCACCGGCTTCCTAATACTCTAC
CAACTTATGCTCAGCGACAGCGTGTCGCCCACCACGATCCTGGTACCCAG
TTGCGGGATCACAGGCATTGGATACCTGTGCTACCGAGGAAGGAGTCTCA
GCTGGGCCCTGCTGGGCGAGGATTCCAAAACCCTGGTCACAGTGGTCCTC
TTCGGCTACTTATTCTCACCGATGCTGCACACCCTAACGCAGGCCATCAG
CACGGACACCATATACACAATGACCTTCTTTGTCCTTCTGGGCAACCTGA
TATTTGGACACTATGGATTGGATGTAGCCATGGTCTCTAAGGCCGTCTCG
TTGAATGCCGCCATATTTGGAGCAATTTGCTTAGCCTCCCGCCTGCCGAC
TTCGTATCACGCCTTCGTGCTCCTTGTCGAGGCTGCCGTCTTTTTCGTCC
TTTATCCCATAATGACGGAAGCGAATTGGCATGCTGGATTCATGTTGCCT
ATATTTGCAATATGCTGTATGGCGCTGTACTGTATATCGCGCCCGGTGCT
CTATCTCTACGCCTCCACCACCATTTTCATCAACTTTGTCTGCCCGTTCA
TATTCGTGTGGCAGCAGCAGTACAAGTTCAACATTCACGGGCCCTGGGAC
GAGGCCATCGTGGAGGAGAACACCGAGGAGAACCTGGATGGGAACTTATA
GCGCCAGCTGCGCTTCTCAGAACAGTTGCCGCCACGACTGGGTAGCGGCG
ACGTCGAGGAGCACTTCACTGATCGCTAAACCATTGCACGCTTATTTTTA
TAACTTTGTAAACTCATTCCAAGCCATTGATGTTAATCTTTTGTATCATG
TTATATCTGTTAGTTTGTAAGTAGCGTTTTAATAAATTATACTTTTTGTG
TTTAAAAAAAAAAAAAAAAAAAA

IP20181.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12077-RB 1267 CG12077-RB 77..1183 1..1107 5535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3317439..3318002 1103..540 2775 99.5 Minus
chr3L 24539361 chr3L 3318101..3318642 542..1 2635 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:41:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3318024..3318591 1107..540 2840 100 Minus
3L 28110227 3L 3318691..3319232 542..1 2710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3318024..3318591 1107..540 2840 100 Minus
3L 28103327 3L 3318691..3319232 542..1 2710 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:17:47 has no hits.

IP20181.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:30 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3317439..3318000 542..1103 99 <- Minus
chr3L 3318102..3318642 1..541 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:19:32 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RA 532..891 542..901 100   Plus
CG12077-RA 1..501 41..541 100 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:37:32 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RB 1..861 41..901 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:47 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-C-RB 1..861 41..901 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:43:52 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RA 1..501 41..541 100 -> Plus
CG12077-RA 532..891 542..901 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:50 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-C-RB 1..861 41..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:07:19 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RA 1..541 1..541 100 -> Plus
CG12077-RA 572..1133 542..1103 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:37:32 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RB 1..1103 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:47 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-C-RB 1..1103 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:43:52 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RA 1..501 41..541 100 -> Plus
CG12077-RA 532..891 542..901 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:50 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-C-RB 1..1103 1..1103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:30 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3318028..3318589 542..1103 100 <- Minus
3L 3318692..3319232 1..541 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:30 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3318028..3318589 542..1103 100 <- Minus
3L 3318692..3319232 1..541 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:30 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3318028..3318589 542..1103 100 <- Minus
3L 3318692..3319232 1..541 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:47 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3318028..3318589 542..1103 100 <- Minus
arm_3L 3318692..3319232 1..541 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:20:28 Download gff for IP20181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3318028..3318589 542..1103 100 <- Minus
3L 3318692..3319232 1..541 100   Minus

IP20181.hyp Sequence

Translation from 0 to 900

> IP20181.hyp
TNRIVNKQFLNLRMVKNGQSKRQPWVKNLYSNREYPDNYTDASFLKDLRT
NLHCRIYTFGEAIAGITVLNNQISCITGFLILYQLMLSDSVSPTTILVPS
CGITGIGYLCYRGRSLSWALLGEDSKTLVTVVLFGYLFSPMLHTLTQAIS
TDTIYTMTFFVLLGNLIFGHYGLDVAMVSKAVSLNAAIFGAICLASRLPT
SYHAFVLLVEAAVFFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPVL
YLYASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAIVEENTEENLDGNL*

IP20181.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-C-PB 286 CG12077-PB 1..286 14..299 1511 100 Plus

IP20181.pep Sequence

Translation from 1 to 900

> IP20181.pep
TNRIVNKQFLNLRMVKNGQSKRQPWVKNLYSNREYPDNYTDASFLKDLRT
NLHCRIYTFGEAIAGITVLNNQISCITGFLILYQLMLSDSVSPTTILVPS
CGITGIGYLCYRGRSLSWALLGEDSKTLVTVVLFGYLFSPMLHTLTQAIS
TDTIYTMTFFVLLGNLIFGHYGLDVAMVSKAVSLNAAIFGAICLASRLPT
SYHAFVLLVEAAVFFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPVL
YLYASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAIVEENTEENLDGNL*

IP20181.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10207-PA 286 GF10207-PA 1..286 14..299 1312 86 Plus
Dana\GF24278-PA 286 GF24278-PA 1..286 14..299 1312 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14266-PA 286 GG14266-PA 1..286 14..299 1459 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14501-PA 286 GH14501-PA 1..286 14..299 1240 81.1 Plus
Dgri\GH25292-PA 286 GH25292-PA 1..286 14..299 1240 81.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-C-PC 312 CG12077-PC 1..286 14..299 1511 100 Plus
PIG-C-PB 286 CG12077-PB 1..286 14..299 1511 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13276-PA 286 GI13276-PA 1..286 14..299 1236 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16095-PA 287 GL16095-PA 1..287 14..299 1226 82.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11379-PA 286 GA11379-PA 1..286 14..299 1321 86.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14059-PA 286 GM14059-PA 1..286 14..299 1507 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13334-PA 285 GD13334-PA 1..285 14..299 1409 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12045-PA 286 GJ12045-PA 1..286 14..299 1231 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20381-PA 286 GK20381-PA 1..286 14..299 1253 81.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20693-PA 286 GE20693-PA 1..286 14..299 1488 96.9 Plus