Clone IP20273 Report

Search the DGRC for IP20273

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:202
Well:73
Vector:pOT2
Associated Gene/TranscriptCG30083-RB
Protein status:IP20273.pep: gold
Sequenced Size:886

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30083 2008-05-05 Release 5.5 slip selected
CG30083 2008-08-15 Release 5.9 accounting
CG30083 2008-12-18 5.12 accounting

Clone Sequence Records

IP20273.complete Sequence

886 bp assembled on 2008-05-14

GenBank Submission: BT032928

> IP20273.complete
TAATGTTTATTTTCACGATTTTCAAGATCATTTTGCTCTGGCCGGGTGCT
ATGTCACAGTTCCTTGAACCGAATTGTGGCTACCCTGACATTAGCCCAAA
AATAATGCATGGTCAGAATGCAGAAAATGGAACCAATCCTTGGATGGCAT
ATATATTTAAATATAATGATAAGGAAGTAGCTGAGCTCGTATGCGGCGGA
ACTCTCATTCACAAACAATTCGTTTTGAGTGCAGCCCATTGCATCAAAAG
AGATCAAATACTTGCCGTTCGTCTTGGAGAACATAGTTCATCAAGGTATT
TTGCAGTGACCAAGGCCTTTCGGAACAAGTACTTTACAACTGGCAGTTAT
AGTAACGATATAGGCATACTTCGTATACAACCAATAGTGAAGTTTAATGC
TGTTATCAGGCCCATTTGCATTATCACGGATCCCACAAAAGTGCCAAATG
TCAAAACCTTCAAGGCTGCAGGCTGGGGAAAAACAGAAAACGAGACATTT
TCGAAGGTGCTTAAAACCGTAGAGTTGAACGAACTCAATGCATCTGAATG
TTACAATATGCTTTGGGTGAATGTAACCGAGAGTCAGATCTGCGCAGGAC
ATCCGGACGGGGATACGTGCGCGGGCGACTCTGGAGGTCCATTGATTCAT
CCGGTATACATGGATGGATCTCTGCGGTACGTGCAACTGGGAATCATCAG
TTTTGGAAGCTCACTATGCAACAGTCCTGGGGTTTATACACGGCTATCAA
GCTTTATCGACTGGATTCTTATGGTGGTAGATAACTACACGGTACGCAGT
CCACCGAAGATTCAGTATCGAGTATGGCCTTACGGTAAATAAAGCATGAA
TATGTTACTTACTTTTGGAAAAAAAAAAAAAAAAAA

IP20273.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG30083-RB 922 CG30083-RB 17..887 1..871 4355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11598825..11599298 868..395 2250 98.3 Minus
chr2R 21145070 chr2R 11599659..11599874 216..1 1035 98.6 Minus
chr2R 21145070 chr2R 11599357..11599493 399..263 640 97.8 Minus
chr2R 21145070 chr2R 11599554..11599599 262..217 230 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:42:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15711594..15712070 871..395 2370 99.8 Minus
2R 25286936 2R 15712429..15712644 216..1 1080 100 Minus
2R 25286936 2R 15712127..15712263 399..263 685 100 Minus
2R 25286936 2R 15712324..15712369 262..217 230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15712793..15713269 871..395 2370 99.7 Minus
2R 25260384 2R 15713628..15713843 216..1 1080 100 Minus
2R 25260384 2R 15713326..15713462 399..263 685 100 Minus
2R 25260384 2R 15713523..15713568 262..217 230 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:30:16 has no hits.

IP20273.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:31:15 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11598825..11599293 400..868 98 <- Minus
chr2R 11599357..11599493 263..399 97 <- Minus
chr2R 11599554..11599599 217..262 100 <- Minus
chr2R 11599659..11599874 1..216 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:20:01 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..840 3..842 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:49:48 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..840 3..842 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:46 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..840 3..842 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:49:06 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RA 1..801 51..842 96   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:25 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..840 3..842 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:12:42 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..868 1..868 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:49:47 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..868 1..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:46 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..868 1..868 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:49:06 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RA 1..801 51..842 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:25 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
CG30083-RB 1..868 1..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:15 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15712127..15712263 263..399 100 <- Minus
2R 15712324..15712369 217..262 100 <- Minus
2R 15712429..15712644 1..216 100   Minus
2R 15711597..15712065 400..868 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:15 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15712127..15712263 263..399 100 <- Minus
2R 15712324..15712369 217..262 100 <- Minus
2R 15712429..15712644 1..216 100   Minus
2R 15711597..15712065 400..868 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:15 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15712127..15712263 263..399 100 <- Minus
2R 15712324..15712369 217..262 100 <- Minus
2R 15712429..15712644 1..216 100   Minus
2R 15711597..15712065 400..868 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:46 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11599102..11599570 400..868 100 <- Minus
arm_2R 11599632..11599768 263..399 100 <- Minus
arm_2R 11599829..11599874 217..262 100 <- Minus
arm_2R 11599934..11600149 1..216 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:28:37 Download gff for IP20273.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15713628..15713843 1..216 100   Minus
2R 15712796..15713264 400..868 100 <- Minus
2R 15713326..15713462 263..399 100 <- Minus
2R 15713523..15713568 217..262 100 <- Minus

IP20273.pep Sequence

Translation from 2 to 841

> IP20273.pep
MFIFTIFKIILLWPGAMSQFLEPNCGYPDISPKIMHGQNAENGTNPWMAY
IFKYNDKEVAELVCGGTLIHKQFVLSAAHCIKRDQILAVRLGEHSSSRYF
AVTKAFRNKYFTTGSYSNDIGILRIQPIVKFNAVIRPICIITDPTKVPNV
KTFKAAGWGKTENETFSKVLKTVELNELNASECYNMLWVNVTESQICAGH
PDGDTCAGDSGGPLIHPVYMDGSLRYVQLGIISFGSSLCNSPGVYTRLSS
FIDWILMVVDNYTVRSPPKIQYRVWPYGK*

IP20273.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13370-PA 505 GF13370-PA 7..283 18..265 385 32.6 Plus
Dana\GF12091-PA 280 GF12091-PA 6..267 3..262 370 32 Plus
Dana\GF15010-PA 628 GF15010-PA 372..627 33..262 367 34 Plus
Dana\GF11497-PA 284 GF11497-PA 10..276 10..263 366 34.1 Plus
Dana\GF11318-PA 308 GF11318-PA 1..224 48..269 366 35.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20542-PA 281 GG20542-PA 18..277 10..260 499 40.3 Plus
Dere\GG20771-PA 275 GG20771-PA 17..275 16..262 464 36.5 Plus
Dere\GG20543-PA 280 GG20543-PA 7..276 3..260 460 35.9 Plus
Dere\GG24240-PA 374 GG24240-PA 6..275 2..258 434 36.2 Plus
Dere\GG20540-PA 291 GG20540-PA 20..288 16..270 423 37.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20292-PA 242 GH20292-PA 2..235 44..255 398 38.3 Plus
Dgri\GH23917-PA 235 GH23917-PA 2..228 33..255 384 37.3 Plus
Dgri\GH20291-PA 237 GH20291-PA 3..230 51..255 366 36.8 Plus
Dgri\GH17229-PA 387 GH17229-PA 115..381 23..255 321 33.8 Plus
Dgri\GH20624-PA 374 GH20624-PA 111..364 30..255 316 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30083-PB 279 CG30083-PB 1..279 1..279 1502 100 Plus
CG30187-PE 489 CG30187-PE 21..274 18..269 519 43.5 Plus
CG30187-PF 500 CG30187-PF 21..274 18..269 519 43.5 Plus
CG30286-PB 277 CG30286-PB 1..269 1..256 506 37.7 Plus
CG30082-PB 280 CR30082-PB 4..274 1..258 505 40.6 Plus
CG30088-PB 281 CG30088-PB 18..278 10..261 469 37.9 Plus
CG30087-PA 277 CG30087-PA 23..270 18..255 468 36.1 Plus
CG43335-PA 281 CG43335-PA 22..279 18..262 467 41.1 Plus
CG30090-PA 291 CG30090-PA 23..281 19..263 458 40.2 Plus
CG10764-PA 523 CG10764-PA 24..260 19..255 454 42.6 Plus
CG43110-PA 483 CG43110-PA 19..265 16..266 432 38.2 Plus
CG43110-PB 483 CG43110-PB 19..265 16..266 432 38.2 Plus
CG33461-PB 287 CG33461-PB 22..285 15..262 391 36.1 Plus
CG43336-PA 279 CG43336-PA 9..277 5..262 384 34.3 Plus
CG33462-PA 300 CG33462-PA 4..276 2..262 383 34.9 Plus
CG18636-PA 349 CG18636-PA 11..281 2..258 381 33.7 Plus
CG43742-PB 474 CG43742-PB 12..257 10..259 378 38.1 Plus
CG18420-PA 299 CG18420-PA 12..279 1..268 371 30.2 Plus
CG33465-PC 488 CG33465-PC 18..271 17..265 366 35.8 Plus
CG30091-PA 526 CG30091-PA 20..277 18..259 364 34.6 Plus
CG33459-PA 284 CG33459-PA 21..272 17..255 357 32.3 Plus
CG30414-PC 305 CG30414-PC 15..298 10..263 350 31.9 Plus
CG30414-PB 305 CG30414-PB 15..298 10..263 350 31.9 Plus
CG11836-PI 281 CG11836-PI 35..276 24..261 347 34.1 Plus
CG11836-PJ 333 CG11836-PJ 87..328 24..261 347 34.1 Plus
CG30283-PB 273 CG30283-PB 28..267 20..259 342 36.7 Plus
CG33225-PB 292 CG33225-PB 23..279 18..260 342 32.5 Plus
CG33225-PC 307 CG33225-PC 38..294 18..260 342 32.5 Plus
CG30289-PA 316 CG30289-PA 22..271 17..255 337 32.4 Plus
CG33226-PC 292 CG33226-PC 32..290 21..263 335 33.2 Plus
CG10232-PD 509 CG10232-PD 244..503 21..255 330 33.3 Plus
CG30287-PA 284 CG30287-PA 8..277 3..255 326 29.7 Plus
CG5909-PA 381 CG5909-PA 121..376 24..255 324 31.9 Plus
CG11836-PF 223 CG11836-PF 12..218 64..261 322 35.4 Plus
CG11836-PE 223 CG11836-PE 12..218 64..261 322 35.4 Plus
CG11836-PG 223 CG11836-PG 12..218 64..261 322 35.4 Plus
CG11836-PC 223 CG11836-PC 12..218 64..261 322 35.4 Plus
CG11836-PA 223 CG11836-PA 12..218 64..261 322 35.4 Plus
CG11836-PB 223 CG11836-PB 12..218 64..261 322 35.4 Plus
MP1-PA 390 CG1102-PA 116..384 21..255 321 31.5 Plus
MP1-PC 399 CG1102-PC 125..393 21..255 321 31.5 Plus
MP1-PE 400 CG1102-PE 126..394 21..255 321 31.5 Plus
CG32260-PC 395 CG32260-PC 145..388 31..255 313 30.6 Plus
CG32260-PA 575 CG32260-PA 325..568 31..255 313 30.6 Plus
CG30288-PC 282 CG30288-PC 25..278 19..263 308 33.7 Plus
CG4914-PA 374 CG4914-PA 119..361 25..256 307 34 Plus
SPE-PA 400 CG16705-PA 127..394 25..255 306 33.5 Plus
grass-PA 335 CG5896-PA 59..326 17..255 296 30.7 Plus
grass-PB 377 CG5896-PB 101..368 17..255 296 30.7 Plus
CG4650-PB 299 CG4650-PB 18..265 14..262 294 31.3 Plus
CG9372-PA 408 CG9372-PA 172..407 32..260 294 33.2 Plus
CG30091-PA 526 CG30091-PA 318..520 47..255 202 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23202-PA 376 GI23202-PA 109..374 24..262 325 31 Plus
Dmoj\GI23960-PA 223 GI23960-PA 12..218 64..261 309 34 Plus
Dmoj\GI13812-PA 377 GI13812-PA 109..364 14..256 305 33.7 Plus
Dmoj\GI17616-PA 540 GI17616-PA 300..535 33..255 305 34.3 Plus
Dmoj\GI22815-PA 312 GI22815-PA 66..300 25..255 300 37 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11857-PA 283 GL11857-PA 10..276 6..259 543 41.6 Plus
Dper\GL11858-PA 345 GL11858-PA 10..290 6..267 516 38.8 Plus
Dper\GL17488-PA 282 GL17488-PA 14..277 9..259 496 39.4 Plus
Dper\GL10743-PA 279 GL10743-PA 21..274 19..259 393 34.5 Plus
Dper\GL17487-PA 304 GL17487-PA 29..301 14..276 387 35.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15642-PA 283 GA15642-PA 10..276 6..259 537 41.8 Plus
Dpse\GA25145-PA 345 GA25145-PA 10..290 6..267 519 39.2 Plus
Dpse\GA24176-PA 282 GA24176-PA 14..277 9..259 504 39.8 Plus
Dpse\GA24468-PA 278 GA24468-PA 22..273 19..259 408 35.1 Plus
Dpse\GA24685-PA 284 GA24685-PA 21..273 19..255 367 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20123-PA 263 GM20123-PA 1..263 17..279 1322 92.4 Plus
Dsec\GM15715-PA 277 GM15715-PA 17..272 16..259 519 39.1 Plus
Dsec\GM21633-PA 279 GM21633-PA 23..270 18..255 486 38.4 Plus
Dsec\GM21631-PA 291 GM21631-PA 23..281 19..263 451 39 Plus
Dsec\GM21632-PA 277 GM21632-PA 10..274 1..261 432 36 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25600-PA 263 GD25600-PA 1..263 17..279 1322 93.2 Plus
Dsim\GD25604-PA 280 GD25604-PA 12..275 9..259 529 42 Plus
Dsim\GD19032-PA 401 GD19032-PA 144..399 20..262 470 40.6 Plus
Dsim\GD11135-PA 278 GD11135-PA 23..271 18..255 465 38.9 Plus
Dsim\GD11133-PA 295 GD11133-PA 23..286 19..268 447 38.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21214-PA 280 GJ21214-PA 11..273 15..255 394 34.7 Plus
Dvir\GJ21212-PA 268 GJ21212-PA 1..261 17..255 391 35.4 Plus
Dvir\GJ21978-PA 296 GJ21978-PA 41..292 30..259 391 32.8 Plus
Dvir\GJ22863-PA 372 GJ22863-PA 110..363 30..255 345 32.5 Plus
Dvir\GJ11155-PA 223 GJ11155-PA 12..218 64..261 312 34.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11884-PA 375 GK11884-PA 99..366 17..255 331 34.7 Plus
Dwil\GK13880-PA 223 GK13880-PA 12..218 64..261 320 34.9 Plus
Dwil\GK10951-PA 391 GK10951-PA 119..385 23..255 314 32.5 Plus
Dwil\GK12860-PA 601 GK12860-PA 344..596 23..255 313 32.7 Plus
Dwil\GK10588-PA 358 GK10588-PA 103..345 25..256 305 34 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14135-PA 202 GE14135-PA 58..202 135..279 613 75.9 Plus
Dyak\GE11726-PA 282 GE11726-PA 25..278 17..260 481 39.7 Plus
Dyak\GE13707-PA 275 GE13707-PA 17..275 16..262 471 39.5 Plus
Dyak\GE11727-PA 280 GE11727-PA 7..271 2..255 462 36.2 Plus
Dyak\GE11725-PA 296 GE11725-PA 15..274 10..259 436 40.1 Plus
Dyak\GE14135-PA 202 GE14135-PA 1..58 17..74 221 67.2 Plus

IP20273.hyp Sequence

Translation from 2 to 841

> IP20273.hyp
MFIFTIFKIILLWPGAMSQFLEPNCGYPDISPKIMHGQNAENGTNPWMAY
IFKYNDKEVAELVCGGTLIHKQFVLSAAHCIKRDQILAVRLGEHSSSRYF
AVTKAFRNKYFTTGSYSNDIGILRIQPIVKFNAVIRPICIITDPTKVPNV
KTFKAAGWGKTENETFSKVLKTVELNELNASECYNMLWVNVTESQICAGH
PDGDTCAGDSGGPLIHPVYMDGSLRYVQLGIISFGSSLCNSPGVYTRLSS
FIDWILMVVDNYTVRSPPKIQYRVWPYGK*

IP20273.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30083-PB 279 CG30083-PB 1..279 1..279 1502 100 Plus
CG30286-PB 277 CG30286-PB 1..269 1..256 506 37.7 Plus
CG30082-PB 280 CR30082-PB 4..274 1..258 505 40.6 Plus
CG30187-PC 440 CG30187-PC 11..225 63..269 488 46 Plus
CG30187-PD 451 CG30187-PD 11..225 63..269 488 46 Plus