Clone IP20303 Report

Search the DGRC for IP20303

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:203
Well:3
Vector:pOT2
Associated Gene/TranscriptOr67a-RA
Protein status:IP20303.pep: gold
Sequenced Size:1520

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Or67a 2008-05-05 Release 5.5 slip selected
Or67a 2008-08-15 Release 5.9 accounting
Or67a 2008-12-18 5.12 accounting

Clone Sequence Records

IP20303.complete Sequence

1520 bp assembled on 2008-05-27

GenBank Submission: BT032718

> IP20303.complete
AGCTGTCAAACTTGTTTTGCTCGCCAATGAAACCGAAATGAAGCTTGTTT
CGGTTCGTATTCAGTTTCGGATTCGATTTCGTTCTTGATGCCTCTCCTTG
TGGTCGTGAAAATATTGCGGTTTCTGCATTGCATTGGGCCTATAAGAACC
CAAATTTCTTTCCTGTATCAATCAGTGTTTATTCAAACCATATTGAAAGT
GTAAAAATTCTATTCTGAAAAATGGATAACGTCGCGGAAATGCCTGAAGA
AAAGTATGTCGAAGTCGATGATTTTTTGAGGCTAGCTGTGAAATTCTACA
ATACTTTGGGCATTGATCCCTATGAAACTGGACGAAAACGAACTATTTGG
TTTCAAATATATTTCGCATTGAATATGTTTAATATGGTGTTTAGTTTTTA
TGCCGAGGTAGCGACTCTGGTGGACAGGTTACGCGATAATGAAAATTTTC
TCGAGAGCTGCATCTTACTGAGCTACGTGTCCTTTGTGGTCATGGGCCTC
TCCAAGATAGGTGCTGTAATGAAAAAAAAGCCAAAAATGACAGCTTTGGT
CAGGCAATTGGAGACCTGCTTTCCGTCGCCAAGTGCAAAGGTTCAAGAGG
AATATGCTGTGAAGTCCTGGCTGAAACGCTGCCATATATACACAAAGGGA
TTTGGTGGTCTCTTCATGATCATGTATTTCGCTCACGCTCTGATTCCCTT
ATTCATATACTTCATTCAAAGAGTGCTGCTCCACTATCCGGATGCCAAGC
AGATTATGCCGTTTTACCAACTCGAACCTTGGGAATTTCGCGACTCCTGG
TTGTTTTATCCAAGCTATTTTCACCAGTCGTCGGCCGGATATACGGCTAC
ATGTGGATCCATTGCCGGTGACCTAATGATCTTCGCTGTGGTCCTGCAGG
TCATCATGCACTACGAAAGACTGGCCAAGGTTCTTAGGGAGTTTAAGATT
CAAGCCCATAACGCACCCAATGGAGCTAAGGAGGATATAAGGAAGTTGCA
GTCCCTAGTCGCCAATCACATTGATATACTTCGACTCACTGATCTGATGA
ACGAGGTCTTTGGAATTCCCTTGTTGCTAAACTTTATTGCATCTGCGCTG
CTGGTCTGCCTGGTGGGAGTTCAATTAACCATCGCTTTAAGTCCAGAGTA
TTTTTGCAAGCAGATGCTATTTCTGATTTCCGTACTGCTTGAGGTCTATC
TCCTTTGCTCCTTCAGCCAGAGGTTAATAGATGCTAGCGAAAACGTGGGC
CATGCGGCATACGATATGGATTGGTTAGGTTCCGACAAACGATTCAAGAA
AATTTTAATTTTTATATCTATGCGATCCCAGAAGCCAGTTTGCCTTAAAG
CCACAGTTGTCTTGGACTTATCCATGCCAACTATGAGCATCTTTCTTGGT
ATGTCGTATAAGTTTTTCTGCGCTGTGAGGACTATGTATCAATAAATGCT
GATATGTATTACTTGGCATATAAAAATTATGTAATCACGTAATATTCAAA
AAAAAAAAAAAAAAAAAAAA

IP20303.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Or67a.a 1497 Or67a.a 1..1497 1..1497 7485 100 Plus
Or67a-RA 1294 Or67a-RA 1..1294 195..1488 6470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9521660..9522595 102..1033 4510 99 Plus
chr3L 24539361 chr3L 9522660..9522862 1033..1235 955 98 Plus
chr3L 24539361 chr3L 9522921..9523076 1236..1391 765 99.4 Plus
chr3L 24539361 chr3L 9523142..9523247 1392..1497 530 100 Plus
chr3L 24539361 chr3L 9520926..9521029 1..104 490 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:42:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9529801..9530732 102..1033 4660 100 Plus
3L 28110227 3L 9530797..9530999 1033..1235 1015 100 Plus
3L 28110227 3L 9531060..9531215 1236..1391 780 100 Plus
3L 28110227 3L 9531281..9531390 1392..1501 550 100 Plus
3L 28110227 3L 9529067..9529170 1..104 520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9522901..9523832 102..1033 4660 100 Plus
3L 28103327 3L 9523897..9524099 1033..1235 1015 100 Plus
3L 28103327 3L 9524160..9524315 1236..1391 780 100 Plus
3L 28103327 3L 9524381..9524490 1392..1501 550 100 Plus
3L 28103327 3L 9522167..9522270 1..104 520 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:13:07 has no hits.

IP20303.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:13:50 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9520926..9521027 1..102 98 -> Plus
chr3L 9521661..9522595 103..1033 99 -> Plus
chr3L 9522661..9522862 1034..1235 98 -> Plus
chr3L 9522921..9523076 1236..1391 99 -> Plus
chr3L 9523142..9523247 1392..1497 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:20:06 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1224 222..1445 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:39:51 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1224 222..1445 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:32 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1224 222..1445 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:46:03 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1224 222..1445 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:01 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1224 222..1445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:09:33 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1226 222..1447 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:39:51 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1226 222..1447 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:32 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1497 1..1497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:46:03 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1226 222..1447 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:01 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
Or67a-RA 1..1497 1..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:50 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9530798..9530999 1034..1235 100 -> Plus
3L 9531060..9531215 1236..1391 100 -> Plus
3L 9531281..9531386 1392..1497 100   Plus
3L 9529067..9529168 1..102 100 -> Plus
3L 9529802..9530732 103..1033 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:50 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9530798..9530999 1034..1235 100 -> Plus
3L 9531060..9531215 1236..1391 100 -> Plus
3L 9531281..9531386 1392..1497 100   Plus
3L 9529067..9529168 1..102 100 -> Plus
3L 9529802..9530732 103..1033 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:50 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9530798..9530999 1034..1235 100 -> Plus
3L 9531060..9531215 1236..1391 100 -> Plus
3L 9531281..9531386 1392..1497 100   Plus
3L 9529067..9529168 1..102 100 -> Plus
3L 9529802..9530732 103..1033 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:32 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9522167..9522268 1..102 100 -> Plus
arm_3L 9522902..9523832 103..1033 100 -> Plus
arm_3L 9523898..9524099 1034..1235 100 -> Plus
arm_3L 9524160..9524315 1236..1391 100 -> Plus
arm_3L 9524381..9524486 1392..1497 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:21:57 Download gff for IP20303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9522902..9523832 103..1033 100 -> Plus
3L 9523898..9524099 1034..1235 100 -> Plus
3L 9524160..9524315 1236..1391 100 -> Plus
3L 9524381..9524486 1392..1497 100   Plus
3L 9522167..9522268 1..102 100 -> Plus

IP20303.pep Sequence

Translation from 221 to 1444

> IP20303.pep
MDNVAEMPEEKYVEVDDFLRLAVKFYNTLGIDPYETGRKRTIWFQIYFAL
NMFNMVFSFYAEVATLVDRLRDNENFLESCILLSYVSFVVMGLSKIGAVM
KKKPKMTALVRQLETCFPSPSAKVQEEYAVKSWLKRCHIYTKGFGGLFMI
MYFAHALIPLFIYFIQRVLLHYPDAKQIMPFYQLEPWEFRDSWLFYPSYF
HQSSAGYTATCGSIAGDLMIFAVVLQVIMHYERLAKVLREFKIQAHNAPN
GAKEDIRKLQSLVANHIDILRLTDLMNEVFGIPLLLNFIASALLVCLVGV
QLTIALSPEYFCKQMLFLISVLLEVYLLCSFSQRLIDASENVGHAAYDMD
WLGSDKRFKKILIFISMRSQKPVCLKATVVLDLSMPTMSIFLGMSYKFFC
AVRTMYQ*

IP20303.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23454-PA 305 GF23454-PA 1..305 106..407 834 51.5 Plus
Dana\GF17722-PA 390 GF17722-PA 1..388 15..406 610 35.1 Plus
Dana\GF17246-PA 412 GF17246-PA 9..410 4..406 604 32.5 Plus
Dana\GF17721-PA 389 GF17721-PA 3..387 18..406 573 33.4 Plus
Dana\GF21104-PA 406 GF21104-PA 16..404 16..406 345 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15384-PA 352 GG15384-PA 1..352 55..407 1435 74.5 Plus
Dere\GG17446-PA 390 GG17446-PA 1..388 15..406 633 33.9 Plus
Dere\GG17444-PA 389 GG17444-PA 3..387 18..406 610 33.2 Plus
Dere\GG11031-PA 412 GG11031-PA 12..410 6..406 561 30.9 Plus
Dere\GG23923-PA 408 GG23923-PA 15..406 13..406 376 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11074-PA 403 GH11074-PA 1..403 7..407 909 41.6 Plus
Dgri\GH14713-PA 396 GH14713-PA 1..394 7..406 563 33 Plus
Dgri\GH17373-PA 411 GH17373-PA 15..409 13..406 515 30.4 Plus
Dgri\GH17253-PA 351 GH17253-PA 2..351 9..407 485 27.6 Plus
Dgri\GH12567-PA 350 GH12567-PA 1..348 7..406 418 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Or67a-PA 407 CG12526-PA 1..407 1..407 2110 100 Plus
Or85c-PA 389 CG17911-PA 3..387 18..406 651 33.7 Plus
Or85b-PA 390 CG11735-PA 1..388 15..406 642 34.4 Plus
Or85d-PA 412 CG11742-PA 12..410 6..406 579 31.6 Plus
Or92a-PA 408 CG17916-PA 11..406 9..406 389 25.6 Plus
Or67c-PA 404 CG14156-PA 14..401 17..406 359 24.9 Plus
Or85f-PA 392 CG16755-PA 9..392 16..407 262 21.2 Plus
Or49a-PA 396 CG13158-PA 2..391 10..403 250 26.2 Plus
Or13a-PA 418 CG12697-PA 171..410 180..406 195 23.7 Plus
Or9a-PA 392 CG15302-PA 8..389 10..404 190 19.9 Plus
Or69a-PB 393 CG33264-PB 33..392 39..405 175 21.1 Plus
Or69a-PA 393 CG33264-PA 89..392 91..405 172 20.9 Plus
Or2a-PA 397 CG3206-PA 241..390 253..399 162 26.7 Plus
Or7a-PA 413 CG10759-PA 214..403 218..405 159 20.5 Plus
Or94a-PA 387 CG17241-PA 161..378 179..398 153 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17592-PA 406 GI17592-PA 7..406 11..407 891 40.5 Plus
Dmoj\GI17593-PA 401 GI17593-PA 1..401 7..407 890 43.1 Plus
Dmoj\GI23678-PA 447 GI23678-PA 5..382 14..395 558 34 Plus
Dmoj\GI23916-PA 417 GI23916-PA 11..415 6..406 546 30.3 Plus
Dmoj\GI21729-PA 405 GI21729-PA 15..403 16..406 369 26.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21545-PA 377 GL21545-PA 3..375 18..406 605 34.2 Plus
Dper\GL22289-PA 413 GL22289-PA 9..411 2..406 579 32.5 Plus
Dper\GL21546-PA 175 GL21546-PA 1..173 229..406 382 40.4 Plus
Dper\GL21400-PA 406 GL21400-PA 16..404 16..406 375 25.8 Plus
Dper\GL11724-PA 406 GL11724-PA 16..404 17..407 305 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Or67a-PA 422 GA27166-PA 17..422 5..407 1135 53.4 Plus
Dpse\Or85b-PA 390 GA11167-PA 1..388 15..406 665 34.6 Plus
Dpse\Or85c-PA 389 GA14720-PA 3..387 18..406 642 34.7 Plus
Dpse\Or85d-PA 413 GA11171-PA 9..411 2..406 578 32.5 Plus
Dpse\Or92a-PA 406 GA27693-PA 16..404 16..406 375 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25155-PA 302 GM25155-PA 1..302 106..407 1404 85.4 Plus
Dsec\GM26338-PA 389 GM26338-PA 3..387 18..406 616 33.9 Plus
Dsec\GM26339-PA 390 GM26339-PA 1..388 15..406 611 34.1 Plus
Dsec\GM23739-PA 412 GM23739-PA 8..410 2..406 572 31.5 Plus
Dsec\GM23201-PA 321 GM23201-PA 139..321 223..407 470 52.7 Plus
Dsec\GM23201-PA 321 GM23201-PA 17..138 5..126 222 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14190-PA 407 GD14190-PA 1..407 1..407 1869 84 Plus
Dsim\GD20073-PA 457 GD20073-PA 61..457 9..407 943 44.5 Plus
Dsim\GD20865-PA 390 GD20865-PA 1..388 15..406 625 34.1 Plus
Dsim\GD20864-PA 389 GD20864-PA 3..387 18..406 587 33.2 Plus
Dsim\GD14189-PA 141 GD14189-PA 3..139 202..338 579 78.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17936-PA 403 GJ17936-PA 1..403 7..407 967 44.3 Plus
Dvir\GJ17935-PA 388 GJ17935-PA 5..386 12..390 845 41.6 Plus
Dvir\GJ23238-PA 396 GJ23238-PA 1..394 7..406 663 34.9 Plus
Dvir\GJ24009-PA 419 GJ24009-PA 15..417 7..406 566 31.1 Plus
Dvir\GJ19109-PA 405 GJ19109-PA 15..403 16..406 345 25.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14158-PA 419 GK14158-PA 21..419 12..407 1029 47.6 Plus
Dwil\GK22463-PA 406 GK22463-PA 7..406 12..407 883 45.4 Plus
Dwil\GK22465-PA 401 GK22465-PA 1..401 7..407 838 42.1 Plus
Dwil\GK11513-PA 395 GK11513-PA 1..393 7..406 627 32.5 Plus
Dwil\GK11590-PA 404 GK11590-PA 11..402 13..406 549 32.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20849-PA 565 GE20849-PA 278..565 119..406 1189 75.3 Plus
Dyak\GE20849-PA 565 GE20849-PA 1..284 106..390 1134 74 Plus
Dyak\GE24847-PA 390 GE24847-PA 1..388 15..406 637 34.7 Plus
Dyak\GE24846-PA 389 GE24846-PA 3..387 18..406 592 34.2 Plus
Dyak\GE25883-PA 412 GE25883-PA 8..410 2..406 551 30.6 Plus
Dyak\GE25665-PA 408 GE25665-PA 11..406 9..406 374 25.6 Plus

IP20303.hyp Sequence

Translation from 221 to 1444

> IP20303.hyp
MDNVAEMPEEKYVEVDDFLRLAVKFYNTLGIDPYETGRKRTIWFQIYFAL
NMFNMVFSFYAEVATLVDRLRDNENFLESCILLSYVSFVVMGLSKIGAVM
KKKPKMTALVRQLETCFPSPSAKVQEEYAVKSWLKRCHIYTKGFGGLFMI
MYFAHALIPLFIYFIQRVLLHYPDAKQIMPFYQLEPWEFRDSWLFYPSYF
HQSSAGYTATCGSIAGDLMIFAVVLQVIMHYERLAKVLREFKIQAHNAPN
GAKEDIRKLQSLVANHIDILRLTDLMNEVFGIPLLLNFIASALLVCLVGV
QLTIALSPEYFCKQMLFLISVLLEVYLLCSFSQRLIDASENVGHAAYDMD
WLGSDKRFKKILIFISMRSQKPVCLKATVVLDLSMPTMSIFLGMSYKFFC
AVRTMYQ*

IP20303.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Or67a-PA 407 CG12526-PA 1..407 1..407 2110 100 Plus
Or85c-PA 389 CG17911-PA 3..387 18..406 651 33.7 Plus
Or85b-PA 390 CG11735-PA 1..388 15..406 642 34.4 Plus
Or85d-PA 412 CG11742-PA 12..410 6..406 579 31.6 Plus
Or92a-PA 408 CG17916-PA 11..406 9..406 389 25.6 Plus