Clone IP20352 Report

Search the DGRC for IP20352

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:203
Well:52
Vector:pOT2
Associated Gene/TranscriptCG13675-RC
Protein status:IP20352.pep: gold
Sequenced Size:1390

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13675 2008-05-05 Release 5.5 slip selected
CG13675 2008-08-15 Release 5.9 accounting
CG13675 2008-12-18 5.12 accounting

Clone Sequence Records

IP20352.complete Sequence

1390 bp assembled on 2008-05-14

GenBank Submission: BT032932

> IP20352.complete
GGATAACCAAAAAAAAAAAAAACATTACAACAAAAAAAAAACAAATACAA
AAAGCAGCAGACATCATGGCAGCCACAACAACAGCAGCGAACAAATCACC
GCAGCAGCAGCAACACAGACGGCAGCAGCATCTTCAGTGGAGCGCCTGCA
TTATGATAGTCGTGTTCGGACTGTTTTCGATGCTGGCCGGGAACTGTGTC
AATGGGCAAATCGATGGCTACACAGCTGGTGAGGATTACCCCGCCTACGA
CGCCGTGCCAAAGGGTCTGGCCTTCAATTGCCAGGGTCGCCAGCCGGGTT
ACTATGCGGACACAGAGACGCGTTGTCAGGTCTGGCATTGGTGCCTCCAC
TCGGGCCATCAGTACTCCTTCCTCTGCCCAAATGGAACCGTATTCAACCA
GGCCGTCAGGGTCTGCGACTGGTGGTCGAATGTGAACTGCGAGGGATCAG
AGCAACTCTACCAGAACAACGACGAACTGTATCGCATCCCAGAGCGCCAG
CAGCAGCTGAATGATGTATGATATGAGGCCGATGATGAGTATAAGATTGG
GACAGCAAACGGAACCAGACAGCGGGGCGGAAGACAGCGGCAATTTCAAA
AGCAACAGCAACAGAAGCAGCAACAGCAGCAACATCAAGCACTCAACAGC
AACACGGCAATCGGCGGAATCAACAGCAGCAATAGAATCGTAGATAGCAG
CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTA
CCACACCAAGTACCAATCCCCAATCGTCATACTCATCATCACAGCAGCAA
CAGCAGCAGCAACAACAACAACAGAAGCAACATCAGAAGCAACATAATTC
TAGTAGAAATAGCGAAAGAAAATCAAAGCCTAGTAGCGTTAACCATAGAG
ATAGGGATAGCAACCAAACTAGATCTAGGAACCGCACTCACAATACCCCT
CAATCCGGCAAGAAGAACAACAGCAACAACAACAGCTCGCGAGGCAAACA
GCGATATAATACGAATAAGTTCGAAAATGATGCGGAGCTCAAGGATTACA
AGAGCAAGATCAAGAACAAATACAATATCGATTATGATCATTCTTTAGAT
GAAGAATATGAAATAATCGAGGCCATCGAATGAGTGAAAATAGCTTTATA
CTCGTTGTTCTTGATGTTGTTGTCACAAAAAATGCGACCCCAAATTGGCG
CCCTAGCACCCAAAAGTTTTGAATGTTACCCAAAATGTACCCGTTGTAAA
TATGTTAAAGTATGAACACATTCCCTTCATTGTTAAATATACACATACCC
CCTTCCATTTAAATTTGTAAAGAAAAGTATTGCTTGTGATTTGCACGAAA
GCAAAAATAAATCTTAAAAAGTAAAAAAAAAAAAAAAAAA

IP20352.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13675-RC 1430 CG13675-RC 59..1430 1..1372 6845 99.9 Plus
CG13675.a 1340 CG13675.a 28..762 1..735 3660 99.8 Plus
CG13675.a 1340 CG13675.a 761..1340 793..1372 2900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8152327..8153371 1372..328 5150 99.5 Minus
chr3L 24539361 chr3L 8156239..8156435 206..10 955 99 Minus
chr3L 24539361 chr3L 8153433..8153558 331..206 615 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:42:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8160313..8161359 1374..328 5235 100 Minus
3L 28110227 3L 8164220..8164425 206..1 1015 99.5 Minus
3L 28110227 3L 8161421..8161546 331..206 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8153413..8154459 1374..328 5235 100 Minus
3L 28103327 3L 8157320..8157525 206..1 1015 99.5 Minus
3L 28103327 3L 8154521..8154646 331..206 630 100 Minus
Blast to na_te.dros performed 2019-03-16 20:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2239..2679 531..1000 378 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6989 591..879 357 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2408..2826 584..986 353 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..7043 553..849 308 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7013 784..1073 278 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6951 585..817 277 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2466 550..728 268 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2680 644..1018 263 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2989 607..981 263 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7072 644..993 237 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1013..1183 559..731 219 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6587..6916 535..871 202 54.8 Plus
BS 5142 BS BS 5142bp 2011..2119 967..1078 148 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2437 955..1080 129 59.5 Plus
roo 9092 roo DM_ROO 9092bp 980..1154 813..983 128 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2525 927..1081 127 55.4 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 8..83 1247..1323 120 66.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 9..84 1247..1323 120 66.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6411..6486 1247..1323 120 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2435 903..1007 115 60.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 944..1073 917..1055 114 59 Plus
Tabor 7345 Tabor TABOR 7345bp 711..776 914..982 112 66.7 Plus

IP20352.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:31:19 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8156239..8156314 131..206 100 == Minus
chr3L 8152327..8152853 846..1372 99 == Minus
chr3L 8152908..8152990 709..791 100 == Minus
chr3L 8153109..8153369 330..590 98 <- Minus
chr3L 8153435..8153557 207..329 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:20:27 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RC 1..456 66..521 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:57:10 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RC 1..456 66..521 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:49 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RD 1..1068 66..1133 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:56:15 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RB 1..450 66..515 100 == Plus
CG13675-RB 451..981 603..1133 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:32 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RD 1..1068 66..1133 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:21:16 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RC 28..1399 1..1372 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:57:10 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RC 28..1399 1..1372 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:49 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RC 28..1399 1..1372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:56:15 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RB 1..450 66..515 100 == Plus
CG13675-RB 451..981 603..1133 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:32 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
CG13675-RC 28..1399 1..1372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:19 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8160315..8161357 330..1372 100 <- Minus
3L 8161423..8161545 207..329 100 <- Minus
3L 8164220..8164425 1..206 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:19 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8160315..8161357 330..1372 100 <- Minus
3L 8161423..8161545 207..329 100 <- Minus
3L 8164220..8164425 1..206 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:19 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8160315..8161357 330..1372 100 <- Minus
3L 8161423..8161545 207..329 100 <- Minus
3L 8164220..8164425 1..206 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:49 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8153415..8154457 330..1372 100 <- Minus
arm_3L 8154523..8154645 207..329 100 <- Minus
arm_3L 8157320..8157525 1..206 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:39 Download gff for IP20352.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8153415..8154457 330..1372 100 <- Minus
3L 8154523..8154645 207..329 100 <- Minus
3L 8157320..8157525 1..206 99   Minus

IP20352.hyp Sequence

Translation from 2 to 520

> IP20352.hyp
ITKKKKNITTKKKHIQKAADIMAATTTAANKSPQQQQHRRQQHLQWSACI
MIVVFGLFSMLAGNCVNGQIDGYTAGEDYPAYDAVPKGLAFNCQGRQPGY
YADTETRCQVWHWCLHSGHQYSFLCPNGTVFNQAVRVCDWWSNVNCEGSE
QLYQNNDELYRIPERQQQLNDV*

IP20352.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13675-PC 151 CG13675-PC 1..151 22..172 852 100 Plus
CG13675-PD 355 CG13675-PD 1..151 22..172 852 100 Plus
CG14301-PB 196 CG14301-PB 88..176 76..164 257 52.8 Plus
CG14304-PC 942 CG14304-PC 653..738 76..161 244 49.4 Plus
CG14304-PB 1136 CG14304-PB 847..932 76..161 244 49.4 Plus

IP20352.pep Sequence

Translation from 2 to 520

> IP20352.pep
ITKKKKNITTKKKQIQKAADIMAATTTAANKSPQQQQHRRQQHLQWSACI
MIVVFGLFSMLAGNCVNGQIDGYTAGEDYPAYDAVPKGLAFNCQGRQPGY
YADTETRCQVWHWCLHSGHQYSFLCPNGTVFNQAVRVCDWWSNVNCEGSE
QLYQNNDELYRIPERQQQLNDV*

IP20352.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10477-PA 346 GF10477-PA 1..155 22..165 682 83.2 Plus
Dana\GF18104-PA 200 GF18104-PA 91..180 75..164 251 53.3 Plus
Dana\GF18106-PA 1141 GF18106-PA 853..938 76..161 249 51.7 Plus
Dana\GF13204-PA 1229 GF13204-PA 54..138 76..158 244 51.2 Plus
Dana\GF17663-PA 1133 GF17663-PA 20..164 8..159 231 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14914-PA 280 GG14914-PA 5..107 69..171 591 97.1 Plus
Dere\GG16372-PA 185 GG16372-PA 76..165 75..164 248 52.2 Plus
Dere\GG20994-PA 1230 GG20994-PA 54..138 76..158 247 51.2 Plus
Dere\GG13930-PA 1128 GG13930-PA 83..164 76..159 229 48.8 Plus
Dere\GG13941-PA 401 GG13941-PA 174..262 76..165 222 50.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15282-PA 200 GH15282-PA 56..177 46..165 592 86.1 Plus
Dgri\GH19216-PA 971 GH19216-PA 661..747 75..161 253 52.3 Plus
Dgri\GH19214-PA 197 GH19214-PA 88..177 75..164 252 53.3 Plus
Dgri\GH12969-PA 205 GH12969-PA 96..185 75..164 250 53.3 Plus
Dgri\GH20446-PA 965 GH20446-PA 66..148 76..156 236 51.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13675-PC 151 CG13675-PC 1..151 22..172 852 100 Plus
CG13675-PD 355 CG13675-PD 1..151 22..172 852 100 Plus
CG14301-PB 196 CG14301-PB 88..176 76..164 257 52.8 Plus
CG14304-PC 942 CG14304-PC 653..738 76..161 244 49.4 Plus
CG14304-PB 1136 CG14304-PB 847..932 76..161 244 49.4 Plus
CG14304-PA 1136 CG14304-PA 847..932 76..161 244 49.4 Plus
CG5756-PB 742 CG5756-PB 54..138 76..158 234 48.8 Plus
CG5756-PC 1220 CG5756-PC 54..138 76..158 234 48.8 Plus
CG14607-PB 401 CG14607-PB 174..262 76..165 227 50.5 Plus
thw-PC 1137 CG14608-PC 96..177 76..159 225 48.8 Plus
CG14880-PA 637 CG14880-PA 48..114 90..156 199 50.7 Plus
CG14880-PB 637 CG14880-PB 48..114 90..156 199 50.7 Plus
CG13676-PB 665 CG13676-PB 105..196 69..160 191 39.4 Plus
CG13676-PA 883 CG13676-PA 105..196 69..160 191 39.4 Plus
CG32036-PC 173 CG32036-PC 56..156 76..169 190 41.7 Plus
ckd-PE 140 CG14959-PE 58..128 90..160 173 42.3 Plus
ckd-PD 140 CG14959-PD 58..128 90..160 173 42.3 Plus
ckd-PC 140 CG14959-PC 58..128 90..160 173 42.3 Plus
CG13643-PE 806 CG13643-PE 33..141 71..171 168 34.5 Plus
CG13643-PC 807 CG13643-PC 33..141 71..171 168 34.5 Plus
CG13643-PB 807 CG13643-PB 33..141 71..171 168 34.5 Plus
CG13643-PD 819 CG13643-PD 33..153 71..171 157 31.1 Plus
mtg-PH 387 CG7549-PH 229..300 90..156 152 40.3 Plus
mtg-PG 387 CG7549-PG 229..300 90..156 152 40.3 Plus
mtg-PF 515 CG7549-PF 357..428 90..156 152 40.3 Plus
mtg-PE 556 CG7549-PE 398..469 90..156 152 40.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11993-PA 323 GI11993-PA 15..117 63..165 578 95.1 Plus
Dmoj\GI24252-PA 1098 GI24252-PA 785..871 75..161 259 52.3 Plus
Dmoj\GI24248-PA 188 GI24248-PA 79..168 75..164 251 52.2 Plus
Dmoj\GI19274-PA 1015 GI19274-PA 64..148 76..158 248 53.5 Plus
Dmoj\GI24104-PA 1130 GI24104-PA 60..141 76..159 227 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22475-PA 286 GL22475-PA 56..182 50..166 324 53.7 Plus
Dper\GL23171-PA 196 GL23171-PA 87..176 75..164 252 53.3 Plus
Dper\GL10537-PA 1248 GL10537-PA 58..140 76..156 235 51.2 Plus
Dper\GL12429-PA 1215 GL12429-PA 21..164 9..159 229 33.3 Plus
Dper\GL12430-PA 403 GL12430-PA 167..252 74..160 222 51.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12452-PA 336 GA12452-PA 54..170 50..165 617 92.3 Plus
Dpse\GA12890-PB 196 GA12890-PA 87..176 75..164 252 53.3 Plus
Dpse\GA12893-PA 1184 GA12893-PA 891..977 75..161 246 50 Plus
Dpse\GA24402-PA 1250 GA24402-PA 58..140 76..156 233 51.2 Plus
Dpse\GA13107-PB 1142 GA13107-PB 21..164 9..159 231 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24965-PA 315 GM24965-PA 24..131 58..165 574 91.7 Plus
Dsec\GM18694-PA 185 GM18694-PA 76..165 75..164 248 52.2 Plus
Dsec\GM19928-PA 1226 GM19928-PA 54..138 76..158 243 50 Plus
Dsec\GM18696-PA 1152 GM18696-PA 863..948 76..161 242 49.4 Plus
Dsec\GM10942-PA 1121 GM10942-PA 21..164 9..159 230 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13016-PA 282 GD13016-PA 5..107 69..171 606 100 Plus
Dsim\GD20160-PA 185 GD20160-PA 76..165 75..164 248 52.2 Plus
Dsim\GD25417-PA 1225 GD25417-PA 54..138 76..158 236 48.8 Plus
Dsim\GD19923-PA 395 GD19923-PA 168..257 76..166 223 50 Plus
Dsim\GD20294-PA 641 GD20294-PA 30..114 81..156 200 44.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12216-PA 213 GJ12216-PA 71..192 46..166 589 85.2 Plus
Dvir\GJ10824-PA 1126 GJ10824-PA 823..909 75..161 257 52.3 Plus
Dvir\GJ10822-PA 191 GJ10822-PA 82..171 75..164 251 53.3 Plus
Dvir\GJ22152-PA 1348 GJ22152-PA 56..140 76..158 238 52.3 Plus
Dvir\GJ10927-PA 1173 GJ10927-PA 84..165 76..159 225 48.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19836-PA 338 GK19836-PA 34..131 69..166 546 94.9 Plus
Dwil\GK22055-PA 848 GK22055-PA 57..157 76..169 266 50 Plus
Dwil\GK14169-PA 180 GK14169-PA 71..160 75..164 251 53.3 Plus
Dwil\GK14170-PA 1051 GK14170-PA 754..839 76..161 241 49.4 Plus
Dwil\GK10820-PA 391 GK10820-PA 168..256 76..165 222 50.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20368-PA 282 GE20368-PA 5..107 69..171 591 97.1 Plus
Dyak\GE25186-PA 219 GE25186-PA 110..199 75..164 248 52.2 Plus
Dyak\GE13937-PA 1226 GE13937-PA 54..138 76..158 243 51.2 Plus
Dyak\GE24913-PA 1058 GE24913-PA 82..163 76..159 231 48.8 Plus
Dyak\GE24914-PA 400 GE24914-PA 173..261 76..165 228 51.6 Plus