IP20401.complete Sequence
789 bp assembled on 2008-05-14
GenBank Submission: BT032729
> IP20401.complete
GAACTTCGTCTAAATTTGTGCGTTTTTTTGGGGGGAAAAGGCAGAAGGTA
GATCAATGGATGCTTCAGTCAAAGAGGAGTATGCTCGTGTTTCGCATCCC
AATCGCCAGCGTGAATTGGCCAAGAAGCGTCTTCTCTTCTGGGCAGGACG
TCTACAGATGATGCCTCACGAGGTGGAAGGGATGTCTGATGGGGAGCTCA
ACCTTAGGTTTGAAAACGTAAAGAGGAAGGAAGCAGCATTTGAGCAGCGA
AAAATTGACTTTGAGCGCTGGGCAGAACTCAACCAGTTGAGATACCTCAT
GTACGAAGAGCAGAGAAAGTACAATGAGCGTTACGGACACGGTGGACCCT
CCATCTGGCGCATCCTGGCCATGGCCCAGCAGGATCTGGAGGAGAAGCTC
CAAATAGATCAACTGCGAGGAAGTTGCCAGCGTTTTCCCTCACCCATGTC
TCTAATGGAAGAACGACATAGTGGCGGAAGGCAACGGTTTCTGGAACCAG
TGAGATCTAGCCTATGTGGCTGTATTTCTGATTCAGATGATGATCTGGAA
CTGAGAACTGATCCCAACTCAGAAAGATATAAAGATAGCTTATTACCCTT
TTTCAACGAATATTGCAATCCTCATGCGAAAAGCGAAGACTCCTTCAAAA
GTAATGGGGAATCTTCAAATCTGGGCTTTTGTCCTCTCTGCAACAAGAAA
CACCTGCGCTTGCCACCTCCTTTCTGATCAGGGAAATAAATCAAAAGGGT
AGACCTGTAATAAGCCCAAAAAAAAAAAAAAAAAAAAAA
IP20401.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33285-RA | 740 | CG33285-RA | 14..740 | 1..727 | 3635 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 21077235..21078001 | 767..1 | 3835 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:42:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21088222..21088989 | 768..1 | 3840 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 21081322..21082089 | 768..1 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 16:54:25 has no hits.
IP20401.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:55:32 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 21077235..21078001 | 1..767 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:20:37 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..672 | 56..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:56:39 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..672 | 56..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:38 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..672 | 56..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:55:46 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..672 | 56..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:24 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..672 | 56..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:20:49 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 14..740 | 1..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:56:39 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..767 | 1..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:38 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..767 | 1..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:55:46 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 14..740 | 1..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:24 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33285-RA | 1..767 | 1..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:32 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21088223..21088989 | 1..767 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:32 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21088223..21088989 | 1..767 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:32 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21088223..21088989 | 1..767 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:38 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21081323..21082089 | 1..767 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:20 Download gff for
IP20401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21081323..21082089 | 1..767 | 100 | | Minus |
IP20401.hyp Sequence
Translation from 55 to 726
> IP20401.hyp
MDASVKEEYARVSHPNRQRELAKKRLLFWAGRLQMMPHEVEGMSDGELNL
RFENVKRKEAAFEQRKIDFERWAELNQLRYLMYEEQRKYNERYGHGGPSI
WRILAMAQQDLEEKLQIDQLRGSCQRFPSPMSLMEERHSGGRQRFLEPVR
SSLCGCISDSDDDLELRTDPNSERYKDSLLPFFNEYCNPHAKSEDSFKSN
GESSNLGFCPLCNKKHLRLPPPF*
IP20401.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33285-PA | 223 | CG33285-PA | 1..223 | 1..223 | 1198 | 100 | Plus |
IP20401.pep Sequence
Translation from 55 to 726
> IP20401.pep
MDASVKEEYARVSHPNRQRELAKKRLLFWAGRLQMMPHEVEGMSDGELNL
RFENVKRKEAAFEQRKIDFERWAELNQLRYLMYEEQRKYNERYGHGGPSI
WRILAMAQQDLEEKLQIDQLRGSCQRFPSPMSLMEERHSGGRQRFLEPVR
SSLCGCISDSDDDLELRTDPNSERYKDSLLPFFNEYCNPHAKSEDSFKSN
GESSNLGFCPLCNKKHLRLPPPF*
IP20401.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13263-PA | 1175 | GG13263-PA | 106..240 | 26..162 | 569 | 78.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33285-PA | 223 | CG33285-PA | 1..223 | 1..223 | 1198 | 100 | Plus |