Clone IP20401 Report

Search the DGRC for IP20401

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:204
Well:1
Vector:pOT2
Associated Gene/TranscriptCG33285-RA
Protein status:IP20401.pep: gold
Sequenced Size:789

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33285 2008-05-05 Release 5.5 slip selected
CG33285 2008-08-15 Release 5.9 accounting
CG33285 2008-12-18 5.12 accounting

Clone Sequence Records

IP20401.complete Sequence

789 bp assembled on 2008-05-14

GenBank Submission: BT032729

> IP20401.complete
GAACTTCGTCTAAATTTGTGCGTTTTTTTGGGGGGAAAAGGCAGAAGGTA
GATCAATGGATGCTTCAGTCAAAGAGGAGTATGCTCGTGTTTCGCATCCC
AATCGCCAGCGTGAATTGGCCAAGAAGCGTCTTCTCTTCTGGGCAGGACG
TCTACAGATGATGCCTCACGAGGTGGAAGGGATGTCTGATGGGGAGCTCA
ACCTTAGGTTTGAAAACGTAAAGAGGAAGGAAGCAGCATTTGAGCAGCGA
AAAATTGACTTTGAGCGCTGGGCAGAACTCAACCAGTTGAGATACCTCAT
GTACGAAGAGCAGAGAAAGTACAATGAGCGTTACGGACACGGTGGACCCT
CCATCTGGCGCATCCTGGCCATGGCCCAGCAGGATCTGGAGGAGAAGCTC
CAAATAGATCAACTGCGAGGAAGTTGCCAGCGTTTTCCCTCACCCATGTC
TCTAATGGAAGAACGACATAGTGGCGGAAGGCAACGGTTTCTGGAACCAG
TGAGATCTAGCCTATGTGGCTGTATTTCTGATTCAGATGATGATCTGGAA
CTGAGAACTGATCCCAACTCAGAAAGATATAAAGATAGCTTATTACCCTT
TTTCAACGAATATTGCAATCCTCATGCGAAAAGCGAAGACTCCTTCAAAA
GTAATGGGGAATCTTCAAATCTGGGCTTTTGTCCTCTCTGCAACAAGAAA
CACCTGCGCTTGCCACCTCCTTTCTGATCAGGGAAATAAATCAAAAGGGT
AGACCTGTAATAAGCCCAAAAAAAAAAAAAAAAAAAAAA

IP20401.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG33285-RA 740 CG33285-RA 14..740 1..727 3635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21077235..21078001 767..1 3835 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:42:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21088222..21088989 768..1 3840 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21081322..21082089 768..1 3840 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:54:25 has no hits.

IP20401.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:55:32 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21077235..21078001 1..767 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:20:37 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..672 56..727 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:56:39 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..672 56..727 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:38 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..672 56..727 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:55:46 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..672 56..727 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:24 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..672 56..727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:20:49 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 14..740 1..727 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:56:39 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..767 1..767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:38 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..767 1..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:55:46 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 14..740 1..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:24 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33285-RA 1..767 1..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:32 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21088223..21088989 1..767 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:32 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21088223..21088989 1..767 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:32 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21088223..21088989 1..767 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:38 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21081323..21082089 1..767 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:20 Download gff for IP20401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21081323..21082089 1..767 100   Minus

IP20401.hyp Sequence

Translation from 55 to 726

> IP20401.hyp
MDASVKEEYARVSHPNRQRELAKKRLLFWAGRLQMMPHEVEGMSDGELNL
RFENVKRKEAAFEQRKIDFERWAELNQLRYLMYEEQRKYNERYGHGGPSI
WRILAMAQQDLEEKLQIDQLRGSCQRFPSPMSLMEERHSGGRQRFLEPVR
SSLCGCISDSDDDLELRTDPNSERYKDSLLPFFNEYCNPHAKSEDSFKSN
GESSNLGFCPLCNKKHLRLPPPF*

IP20401.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33285-PA 223 CG33285-PA 1..223 1..223 1198 100 Plus

IP20401.pep Sequence

Translation from 55 to 726

> IP20401.pep
MDASVKEEYARVSHPNRQRELAKKRLLFWAGRLQMMPHEVEGMSDGELNL
RFENVKRKEAAFEQRKIDFERWAELNQLRYLMYEEQRKYNERYGHGGPSI
WRILAMAQQDLEEKLQIDQLRGSCQRFPSPMSLMEERHSGGRQRFLEPVR
SSLCGCISDSDDDLELRTDPNSERYKDSLLPFFNEYCNPHAKSEDSFKSN
GESSNLGFCPLCNKKHLRLPPPF*

IP20401.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13263-PA 1175 GG13263-PA 106..240 26..162 569 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33285-PA 223 CG33285-PA 1..223 1..223 1198 100 Plus