Clone IP20428 Report

Search the DGRC for IP20428

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:204
Well:28
Vector:pOT2
Associated Gene/TranscriptCG11626-RB
Protein status:IP20428.pep: gold
Sequenced Size:1834

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11626 2008-05-05 Release 5.5 slip selected
CG11626 2008-08-15 Release 5.9 accounting
CG11626 2008-12-18 5.12 accounting

Clone Sequence Records

IP20428.complete Sequence

1834 bp assembled on 2008-05-14

GenBank Submission: BT032734

> IP20428.complete
TTATTTTGAATATGAAAAAAACAATGTTATGTTTTAGCGTTATTATCGTA
ATGCCAAGTATTTCAAGCCCCATGGACCCATTTACATATTTGTGGGAGGT
GAATGGACCATTAGCCCAGGATTATTGAGCACTGGATTAACCCACGACAT
GGCAGTGGAAAACTCGGGAATGCTTTTCTACACCGAACACCGCTACTATG
GACTGAGTTTACCTTTTGGCAATGAAAGTTACCGATTGAGCAACCTCAAG
CAACTGAGTCTTCATCAATCATTGGCTGACTTGGCTCACTTCATACGCCA
CCAAAAGTCAAATGACCCCGAAATGGAGGACTCCAAAGTCATTTTGGTTG
GCGGCTCTTATTCGGGCAGCTTGGTGGCATGGATGACTCAACTGTATCCG
GATTTAATAGCTGCCAGTTGGGCCTCCAGTGCACCATTATTGGCGAAAGC
GGATTTTTTTGAATACATGGAAATGGTCGGCAAATCAATACAATTGAGCT
ACGGCAACAACTGCTCTTTGCGTATTGAAAAGGGTTTCAAATTCTTGGTA
AAGCTATTTGATGGTGATGAAATTCAGGAGCTGCTCTATAATCTTAATGG
CTGCGTGGGCTATAGTCCAAAGAATCCTTTGGATAGGGCAGCTTTCTTCA
ATGGACTGGGAAACTATTTTGCTTTAGTGGTACAAAGTTATAGTGCTTCT
ATACCGCGGCTTTGTGAGACTTTGATGAGCTTAGATTCAAGTGATGAGCT
GGCATTTATAGAATTCTTGAAACTGCTTTATTCGGAAGGAAGGCGCTCCA
GTGATTGCCAGGACTTTGGCTACTCATCCATGCTAGAACTTTTCACCGAG
GATTCAGTTCAAAGTTCAGAAACTCGTGCCTGGTTTTATCAAACCTGCAA
TGAGTTTGGCTGGTACACAACTACAAAATCCAAATCATCCGCGTCCCAAG
CCTTTGCCAATCAGGTGCCCCTTGGCTACTTCGAACAACTTTGCCAGGAT
GCGTTTGGAGCGGAGCAGACTGCCCACCAATTGGCCCATGGCGTTGAGCA
GACGAATAGCAAATTCGGCGGATTCGGGTTCAATCAGAGCGAGCGTTATG
CTCAGGTAATCTTCACGCATGGCGAACTGGATCCGTGGAGTGCTCTGGGC
CAGCAAAAGGGTGACCAGGCTATAGTCCTGACGGGCTACTCGCACGTCGA
GGATTTGTCCAGCATCCGGGTGATGGACAGCGTGCAGATGAATCTGGCCA
AGCTGCGTGTTATGTCCTTTCTGCGACGCCACATATGAATCATACCGGAT
CCACATCCAGATCCACTCGAATAAATTATTAAACTAACAAATGCGTCGTG
TGATGAGCCCATTTGAAAATGTCATGGGAGCAGCTCCTCGTGTCCTTTGG
CAAACAAAGTGATAAATGGAGTGATGCTTGGACACTAAGTGATATGTCTG
GTCCGTTGGCTTGCGTAAACAATTTTCCCGAATGCGGCATTCTTGTTGAT
TAGGAAATTGCACTTGTCCTTTGGCTTTTGCATTTTCCCCTGTTTGTTTG
TCTTGGCTTGATTGGTTGATTAAGGAACCCATTGAGTGGACACCTACGCC
TCCACTTATATAGGTGGTGTTTGTGAAAACTTTCTTGACATGGAGTAAAG
TCTCAAGGTATTTCAAACAGCCGCCTGGGTAAGATGTAATTTATCATCAA
GGAAGTCTCTTATACTTAGCCATTTCGATAGCTAACTAGAACATGTATAT
TGCTATTACTACATTGATAACCAAATCCTAATAAAAAAATTCACCATTTG
GCGGAATGAAGCTTTAAAAAAAAAAAAAAAAAAA

IP20428.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11626-RB 1815 CG11626-RB 1..1815 1..1815 9075 100 Plus
CG11626.b 2117 CG11626.b 303..2117 1..1815 9075 100 Plus
CG11626.a 1892 CG11626.a 114..1892 37..1815 8895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15234530..15235161 1184..1815 3145 99.8 Plus
chr3R 27901430 chr3R 15234162..15234474 873..1185 1535 99.4 Plus
chr3R 27901430 chr3R 15233351..15233593 219..461 1185 99.2 Plus
chr3R 27901430 chr3R 15233636..15233872 457..693 1155 99.2 Plus
chr3R 27901430 chr3R 15233069..15233288 1..219 1050 99.5 Plus
chr3R 27901430 chr3R 15233927..15234107 692..872 905 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:42:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19410634..19411266 1184..1816 3165 100 Plus
3R 32079331 3R 19410266..19410578 873..1185 1565 100 Plus
3R 32079331 3R 19409456..19409698 219..461 1215 100 Plus
3R 32079331 3R 19409741..19409977 457..693 1170 99.6 Plus
3R 32079331 3R 19409175..19409393 1..219 1095 100 Plus
3R 32079331 3R 19410032..19410212 692..872 905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19151465..19152097 1184..1816 3165 100 Plus
3R 31820162 3R 19151097..19151409 873..1185 1565 100 Plus
3R 31820162 3R 19150287..19150529 219..461 1215 100 Plus
3R 31820162 3R 19150572..19150808 457..693 1170 99.5 Plus
3R 31820162 3R 19150006..19150224 1..219 1095 100 Plus
3R 31820162 3R 19150863..19151043 692..872 905 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:27:10 has no hits.

IP20428.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:27:59 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15233069..15233288 1..219 99 -> Plus
chr3R 15233352..15233593 220..461 99 -> Plus
chr3R 15233641..15233872 462..693 99 -> Plus
chr3R 15233929..15234107 694..872 100 -> Plus
chr3R 15234162..15234473 873..1184 99 -> Plus
chr3R 15234531..15235158 1185..1815 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:20:47 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:51:16 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:55 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:50:31 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:01:34 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:14:17 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:51:16 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1815 1..1815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:55 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1815 1..1815 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:50:31 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1140 149..1288 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:01:34 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
CG11626-RB 1..1815 1..1815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:59 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19410266..19410577 873..1184 100 -> Plus
3R 19409175..19409393 1..219 100 -> Plus
3R 19409457..19409698 220..461 100 -> Plus
3R 19409746..19409977 462..693 100 -> Plus
3R 19410034..19410212 694..872 100 -> Plus
3R 19410635..19411265 1185..1815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:59 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19410266..19410577 873..1184 100 -> Plus
3R 19409175..19409393 1..219 100 -> Plus
3R 19409457..19409698 220..461 100 -> Plus
3R 19409746..19409977 462..693 100 -> Plus
3R 19410034..19410212 694..872 100 -> Plus
3R 19410635..19411265 1185..1815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:59 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19410266..19410577 873..1184 100 -> Plus
3R 19409175..19409393 1..219 100 -> Plus
3R 19409457..19409698 220..461 100 -> Plus
3R 19409746..19409977 462..693 100 -> Plus
3R 19410034..19410212 694..872 100 -> Plus
3R 19410635..19411265 1185..1815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:55 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15234897..15235115 1..219 100 -> Plus
arm_3R 15235179..15235420 220..461 100 -> Plus
arm_3R 15235468..15235699 462..693 100 -> Plus
arm_3R 15235756..15235934 694..872 100 -> Plus
arm_3R 15235988..15236299 873..1184 100 -> Plus
arm_3R 15236357..15236987 1185..1815 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:29:34 Download gff for IP20428.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19150006..19150224 1..219 100 -> Plus
3R 19150288..19150529 220..461 100 -> Plus
3R 19150577..19150808 462..693 100 -> Plus
3R 19150865..19151043 694..872 100 -> Plus
3R 19151097..19151408 873..1184 100 -> Plus
3R 19151466..19152096 1185..1815 100   Plus

IP20428.pep Sequence

Translation from 148 to 1287

> IP20428.pep
MAVENSGMLFYTEHRYYGLSLPFGNESYRLSNLKQLSLHQSLADLAHFIR
HQKSNDPEMEDSKVILVGGSYSGSLVAWMTQLYPDLIAASWASSAPLLAK
ADFFEYMEMVGKSIQLSYGNNCSLRIEKGFKFLVKLFDGDEIQELLYNLN
GCVGYSPKNPLDRAAFFNGLGNYFALVVQSYSASIPRLCETLMSLDSSDE
LAFIEFLKLLYSEGRRSSDCQDFGYSSMLELFTEDSVQSSETRAWFYQTC
NEFGWYTTTKSKSSASQAFANQVPLGYFEQLCQDAFGAEQTAHQLAHGVE
QTNSKFGGFGFNQSERYAQVIFTHGELDPWSALGQQKGDQAIVLTGYSHV
EDLSSIRVMDSVQMNLAKLRVMSFLRRHI*

IP20428.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16552-PA 597 GF16552-PA 108..478 1..371 1594 78.4 Plus
Dana\GF16546-PA 473 GF16546-PA 105..472 1..379 686 38.4 Plus
Dana\GF16547-PA 480 GF16547-PA 114..479 1..379 624 37.4 Plus
Dana\GF16549-PA 489 GF16549-PA 118..484 4..377 522 31.7 Plus
Dana\GF16550-PA 489 GF16550-PA 115..482 1..375 487 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23317-PA 486 GG23317-PA 108..486 1..379 1902 94.2 Plus
Dere\GG23239-PA 473 GG23239-PA 105..472 1..379 675 38.7 Plus
Dere\GG23250-PA 480 GG23250-PA 114..477 1..377 619 37 Plus
Dere\GG23262-PA 485 GG23262-PA 112..479 1..375 494 31.4 Plus
Dere\GG14395-PA 508 GG14395-PA 128..498 13..377 409 30.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22390-PA 497 GH22390-PA 107..495 1..379 1255 61.4 Plus
Dgri\CpepX-PA 478 GH22291-PA 112..477 1..379 646 37.4 Plus
Dgri\GH22290-PA 633 GH22290-PA 288..630 28..377 628 39 Plus
Dgri\GH22293-PA 481 GH22293-PA 112..478 1..377 520 31.8 Plus
Dgri\GH22292-PA 480 GH22292-PA 111..477 1..377 519 31.8 Plus
Dgri\GH22290-PA 633 GH22290-PA 109..287 1..181 395 45.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11626-PB 379 CG11626-PB 1..379 1..379 1973 100 Plus
CG3734-PB 473 CG3734-PB 105..472 1..379 656 37.9 Plus
CG3734-PA 473 CG3734-PA 105..472 1..379 656 37.9 Plus
CG18493-PA 480 CG18493-PA 114..477 1..377 616 37.3 Plus
CG3739-PB 485 CG3739-PB 112..479 1..375 499 32 Plus
CG9953-PA 508 CG9953-PA 128..498 13..377 408 30.8 Plus
CG2493-PB 475 CG2493-PB 99..435 2..344 231 25.2 Plus
CG2493-PA 475 CG2493-PA 99..435 2..344 231 25.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24472-PA 499 GI24472-PA 112..495 1..378 1210 60.2 Plus
Dmoj\GI23097-PA 691 GI23097-PA 324..688 1..376 694 39.1 Plus
Dmoj\GI23098-PA 386 GI23098-PA 39..383 1..377 645 38.9 Plus
Dmoj\GI23100-PA 882 GI23100-PA 112..444 1..346 592 37.2 Plus
Dmoj\GI23100-PA 882 GI23100-PA 516..881 1..379 504 32.1 Plus
Dmoj\GI24473-PA 483 GI24473-PA 116..479 1..376 501 32.8 Plus
Dmoj\GI23097-PA 691 GI23097-PA 108..208 1..103 294 56.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12651-PA 482 GL12651-PA 108..482 1..379 1439 71.5 Plus
Dper\GL12646-PA 473 GL12646-PA 105..472 1..379 643 36.8 Plus
Dper\GL12647-PA 479 GL12647-PA 113..474 1..375 630 37.8 Plus
Dper\GL12648-PA 485 GL12648-PA 114..480 1..376 540 33.7 Plus
Dper\GL15050-PA 508 GL15050-PA 130..500 13..377 438 30.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11106-PA 482 GA11106-PA 108..482 1..379 1432 71.2 Plus
Dpse\GA11106-PB 396 GA11106-PB 1..396 1..379 1399 67.5 Plus
Dpse\GA17650-PA 473 GA17650-PA 105..472 1..379 645 37.1 Plus
Dpse\GA14959-PA 479 GA14959-PA 113..474 1..375 630 37.8 Plus
Dpse\GA17653-PA 485 GA17653-PA 114..480 1..376 535 33.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26842-PA 487 GM26842-PA 108..487 1..379 1925 95.8 Plus
Dsec\GM26836-PA 473 GM26836-PA 105..472 1..379 668 37.9 Plus
Dsec\GM14810-PA 508 GM14810-PA 128..498 13..377 412 31.1 Plus
Dsec\GM23324-PA 475 GM23324-PA 99..472 2..379 221 24.6 Plus
Dsec\GM26837-PA 267 GM26837-PA 138..261 245..375 198 31.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19291-PA 487 GD19291-PA 108..487 1..379 1920 95.5 Plus
Dsim\GD19287-PA 530 GD19287-PA 189..528 34..379 441 30.4 Plus
Dsim\GD13982-PA 508 GD13982-PA 128..498 13..377 409 30.8 Plus
Dsim\GD19284-PA 515 GD19284-PA 105..285 1..183 390 45.9 Plus
Dsim\GD19287-PA 530 GD19287-PA 1..177 1..179 386 45.8 Plus
Dsim\GD19285-PA 178 GD19285-PA 4..177 197..379 290 31.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24539-PA 489 GJ24539-PA 112..486 1..379 1311 65.4 Plus
Dvir\GJ22718-PA 476 GJ22718-PA 108..473 1..377 672 38.3 Plus
Dvir\GJ22719-PA 478 GJ22719-PA 112..477 1..379 658 40.1 Plus
Dvir\GJ22720-PA 487 GJ22720-PA 118..486 1..379 512 33.2 Plus
Dvir\GJ13120-PA 513 GJ13120-PA 131..501 13..377 417 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13814-PA 303 GK13814-PA 1..303 75..379 1081 63.8 Plus
Dwil\GK13808-PA 445 GK13808-PA 79..442 1..377 646 38.6 Plus
Dwil\GK13807-PA 481 GK13807-PA 110..480 1..379 643 38.1 Plus
Dwil\GK16991-PA 512 GK16991-PA 125..500 6..375 428 31.3 Plus
Dwil\GK24560-PA 480 GK24560-PA 97..471 1..379 217 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25606-PA 380 GE25606-PA 1..380 1..379 1825 90.5 Plus
Dyak\GE25599-PA 473 GE25599-PA 105..472 1..379 656 37.4 Plus
Dyak\GE25600-PA 480 GE25600-PA 114..479 1..379 609 37.1 Plus
Dyak\GE25604-PA 485 GE25604-PA 112..479 1..375 496 31.9 Plus
Dyak\GE25601-PA 485 GE25601-PA 112..479 1..375 496 31.9 Plus

IP20428.hyp Sequence

Translation from 148 to 1287

> IP20428.hyp
MAVENSGMLFYTEHRYYGLSLPFGNESYRLSNLKQLSLHQSLADLAHFIR
HQKSNDPEMEDSKVILVGGSYSGSLVAWMTQLYPDLIAASWASSAPLLAK
ADFFEYMEMVGKSIQLSYGNNCSLRIEKGFKFLVKLFDGDEIQELLYNLN
GCVGYSPKNPLDRAAFFNGLGNYFALVVQSYSASIPRLCETLMSLDSSDE
LAFIEFLKLLYSEGRRSSDCQDFGYSSMLELFTEDSVQSSETRAWFYQTC
NEFGWYTTTKSKSSASQAFANQVPLGYFEQLCQDAFGAEQTAHQLAHGVE
QTNSKFGGFGFNQSERYAQVIFTHGELDPWSALGQQKGDQAIVLTGYSHV
EDLSSIRVMDSVQMNLAKLRVMSFLRRHI*

IP20428.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11626-PB 379 CG11626-PB 1..379 1..379 1973 100 Plus
CG3734-PB 473 CG3734-PB 105..472 1..379 656 37.9 Plus
CG3734-PA 473 CG3734-PA 105..472 1..379 656 37.9 Plus
CG18493-PA 480 CG18493-PA 114..477 1..377 616 37.3 Plus
CG3739-PB 485 CG3739-PB 112..479 1..375 499 32 Plus