Clone IP20547 Report

Search the DGRC for IP20547

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:205
Well:47
Vector:pOT2
Associated Gene/TranscriptCG34054-RA
Protein status:IP20547.pep: gold
Sequenced Size:562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34054 2008-05-05 Release 5.5 slip selected
CG34054 2008-08-15 Release 5.9 accounting
CG34054 2008-12-18 5.12 accounting

Clone Sequence Records

IP20547.complete Sequence

562 bp assembled on 2008-05-14

GenBank Submission: BT032945

> IP20547.complete
ACCGTTTGCTATAAAATGTATTTTGGCAAAGTAATTTCACTGTTTCTATT
TTGTTTTCTGTTGGGAGGCATTTGGGCTCAGGATGTTATACCAGAGATAC
CAGAAGATGTTAGGCCAACGGAGCCCACGACAACTACAACAACAGATGCC
ACAAGAACCTCTACAACAAAATCCACCACAACTACAACAACGGAACCCAC
CACAACCACTTCAACAACGAAACCCATCACGACTTCAACAACACAAAGGC
CTCCCTTTGAGCAACCCACACGGACAACCGAGATTCCTGGGGTGTGGATG
CAACCGATAGAAAGATGCTTTCTGAGAAATCAGATGAAGTATAATACTTG
CTGGCCAGTCCCACCGAGGGCCACTTGTTATCGCTGCTGCTACTACTACG
ACAGCCATATCACCGAATGTAGTAAGCTCCACCAAGGGCCTTGTGTGGCG
TATGATTATGGCCAACTGAAAGTGCACGTAAATTGGAAACAAGTATTGTA
AAAAGAAATTAAGCAGGAACAGAAATAAAAACAGTAAAATGCTTGAAAAA
AAAAAAAAAAAA

IP20547.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG34054-RA 850 CG34054-RA 193..739 1..547 2735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7297563..7297912 350..1 1735 99.7 Minus
chr2R 21145070 chr2R 7297284..7297479 545..350 965 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:43:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11410089..11410438 350..1 1750 100 Minus
2R 25286936 2R 11409808..11410005 547..350 990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11411288..11411637 350..1 1750 100 Minus
2R 25260384 2R 11411007..11411204 547..350 990 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:49:22 has no hits.

IP20547.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:50:06 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7297284..7297479 350..545 99 <- Minus
chr2R 7297564..7297912 1..349 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:21:40 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:49:33 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:37 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:48:49 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:05 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:12:22 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:49:33 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..545 1..545 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:37 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..545 1..545 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:48:50 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..486 16..501 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:05 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG34054-RA 1..545 1..545 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:50:06 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11409810..11410005 350..545 100 <- Minus
2R 11410090..11410438 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:50:06 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11409810..11410005 350..545 100 <- Minus
2R 11410090..11410438 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:50:06 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11409810..11410005 350..545 100 <- Minus
2R 11410090..11410438 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:37 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7297595..7297943 1..349 100   Minus
arm_2R 7297315..7297510 350..545 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:28:29 Download gff for IP20547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11411009..11411204 350..545 100 <- Minus
2R 11411289..11411637 1..349 100   Minus

IP20547.pep Sequence

Translation from 0 to 500

> IP20547.pep
TVCYKMYFGKVISLFLFCFLLGGIWAQDVIPEIPEDVRPTEPTTTTTTDA
TRTSTTKSTTTTTTEPTTTTSTTKPITTSTTQRPPFEQPTRTTEIPGVWM
QPIERCFLRNQMKYNTCWPVPPRATCYRCCYYYDSHITECSKLHQGPCVA
YDYGQLKVHVNWKQVL*

IP20547.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34054-PA 161 CG34054-PA 1..161 6..166 900 100 Plus
CG30026-PB 228 CG30026-PB 10..219 19..155 249 34.1 Plus
CG6912-PA 433 CG6912-PA 90..164 39..106 161 50 Plus
CG6912-PA 433 CG6912-PA 90..156 34..96 150 52.2 Plus
Muc96D-PA 881 CG31439-PA 631..685 39..93 149 58.2 Plus
CG6912-PA 433 CG6912-PA 106..165 40..96 148 56.7 Plus
CG34220-PA 726 CG34220-PA 537..593 40..96 147 57.9 Plus
CG43798-PA 213 CG43798-PA 129..191 31..92 146 50.8 Plus
Muc96D-PA 881 CG31439-PA 518..574 40..96 146 56.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20427-PA 161 GM20427-PA 1..161 6..166 616 91.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15251-PA 161 GD15251-PA 1..161 6..166 608 90.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13521-PA 177 GE13521-PA 1..177 6..166 438 58.2 Plus

IP20547.hyp Sequence

Translation from 0 to 500

> IP20547.hyp
TVCYKMYFGKVISLFLFCFLLGGIWAQDVIPEIPEDVRPTEPTTTTTTDA
TRTSTTKSTTTTTTEPTTTTSTTKPITTSTTQRPPFEQPTRTTEIPGVWM
QPIERCFLRNQMKYNTCWPVPPRATCYRCCYYYDSHITECSKLHQGPCVA
YDYGQLKVHVNWKQVL*

IP20547.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG34054-PA 161 CG34054-PA 1..161 6..166 900 100 Plus
CG30026-PB 228 CG30026-PB 10..219 19..155 249 34.1 Plus
CG6912-PA 433 CG6912-PA 90..164 39..106 161 50 Plus
CG6912-PA 433 CG6912-PA 90..156 34..96 150 52.2 Plus
Muc96D-PA 881 CG31439-PA 631..685 39..93 149 58.2 Plus
CG6912-PA 433 CG6912-PA 106..165 40..96 148 56.7 Plus
CG43798-PA 213 CG43798-PA 129..191 31..92 146 50.8 Plus