IP20553.complete Sequence
465 bp assembled on 2008-12-12
GenBank Submission: BT032946
> IP20553.complete
TTCCTTCATCATCATCGCCCTCTTCGCACTGATTGCCGTGGCTGCCGCTC
AAGGTGGACCCCAGGGCGGACCTCAGGGTGGACCTCAGGGTGGACCTCAA
GGTGGACCACAGGGCGGACCCCAGGGTGGACCTCAAGGTGGACCCCAGGG
TGGTCCTCAGGGAGGACCCCAGGGTGGACCGCAGGGAGGACCCCAGGGTG
GTCCTGGTGGACCCGGTGGACCCGGGGGACCGTGGGGACTGCCTCCAAAT
GCCACTCTTCCCAGCAACAGCACTACCACCACCACCACTTCAACGACCAC
CGAATCCAGCACCAGCACAACCACGGAAGCCAGCACCGAGTCATCCCCTG
CTTAAGGCGCAGGACTCCAGCCAATCTAAAATCCATTTTTGGCTTGTTCT
CTTCCGCGCTTTCCTCGATATTAATAAAAGTCTTTTCTGCAAAAAGTAAA
AAAAAAAAAAAAAAA
IP20553.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13947-RA | 360 | CG13947-RA | 6..360 | 1..355 | 1775 | 100 | Plus |
| CG12506-RA | 446 | CG12506-RA | 26..106 | 1..81 | 210 | 83.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr2L | 23010047 | chr2L | 779068..779523 | 1..447 | 2080 | 97.6 | Plus |
| chr2L | 23010047 | chr2L | 779115..779244 | 72..201 | 410 | 87.7 | Plus |
| chr2L | 23010047 | chr2L | 779115..779224 | 96..205 | 385 | 90 | Plus |
| chr2L | 23010047 | chr2L | 779163..779272 | 48..157 | 385 | 90 | Plus |
| chr2L | 23010047 | chr2L | 779115..779229 | 84..198 | 305 | 84.3 | Plus |
| chr2L | 23010047 | chr2L | 779123..779208 | 116..201 | 250 | 86 | Plus |
| chr2L | 23010047 | chr2L | 779183..779268 | 56..141 | 250 | 86 | Plus |
| chr2L | 23010047 | chr2L | 779120..779200 | 125..205 | 240 | 86.4 | Plus |
| chr2L | 23010047 | chr2L | 779192..779272 | 53..133 | 240 | 86.4 | Plus |
| chr2L | 23010047 | chr2L | 779115..779181 | 132..198 | 215 | 88.1 | Plus |
| chr2L | 23010047 | chr2L | 779199..779265 | 48..114 | 215 | 88.1 | Plus |
| chr2L | 23010047 | chr2L | 773467..773547 | 1..81 | 210 | 84 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:43:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 779209..779658 | 1..450 | 2250 | 100 | Plus |
| 2L | 23513712 | 2L | 779256..779365 | 96..205 | 385 | 90 | Plus |
| 2L | 23513712 | 2L | 779304..779413 | 48..157 | 385 | 90 | Plus |
| 2L | 23513712 | 2L | 779256..779370 | 84..198 | 305 | 84.3 | Plus |
| 2L | 23513712 | 2L | 779292..779406 | 48..162 | 305 | 84.3 | Plus |
| 2L | 23513712 | 2L | 779264..779349 | 116..201 | 250 | 86 | Plus |
| 2L | 23513712 | 2L | 779324..779409 | 56..141 | 250 | 86 | Plus |
| 2L | 23513712 | 2L | 779261..779341 | 125..205 | 240 | 86.4 | Plus |
| 2L | 23513712 | 2L | 779333..779413 | 53..133 | 240 | 86.4 | Plus |
| 2L | 23513712 | 2L | 779340..779406 | 48..114 | 215 | 88.1 | Plus |
| 2L | 23513712 | 2L | 779256..779322 | 132..198 | 215 | 88.1 | Plus |
| 2L | 23513712 | 2L | 773600..773680 | 1..81 | 210 | 84 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 779209..779658 | 1..450 | 2250 | 100 | Plus |
| 2L | 23513712 | 2L | 773600..773680 | 1..81 | 210 | 83.9 | Plus |
Blast to na_te.dros performed on 2019-03-15 15:03:43 has no hits.
IP20553.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:04:46 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr2L | 779401..779523 | 325..447 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:21:46 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:22:19 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:00:39 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:51:43 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:00 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-12 10:25:51 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:22:18 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 9..455 | 1..447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:00:39 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 37..483 | 1..447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:51:44 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 6..360 | 1..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:00 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13947-RA | 37..483 | 1..447 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:46 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 779209..779655 | 1..447 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:46 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 779209..779655 | 1..447 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:46 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 779209..779655 | 1..447 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:00:39 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 779209..779655 | 1..447 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:54:02 Download gff for
IP20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 779209..779655 | 1..447 | 100 | | Plus |
IP20553.hyp Sequence
Translation from 0 to 447
> IP20553.hyp
FLHHHRPLRTDCRGCRSRWTPGRTSGWTSGWTSRWTTGRTPGWTSRWTPG
WSSGRTPGWTAGRTPGWSWWTRWTRGTVGTASKCHSSQQQHYHHHHFNDH
RIQHQHNHGSQHRVIPCLRRRTPANLKSIFGLFSSALSSILIKVFSAKS
Sequence IP20553.hyp has no blast hits.
IP20553.pep Sequence
Translation from 1 to 354
> IP20553.pep
SFIIIALFALIAVAAAQGGPQGGPQGGPQGGPQGGPQGGPQGGPQGGPQG
GPQGGPQGGPQGGPQGGPGGPGGPGGPWGLPPNATLPSNSTTTTTTSTTT
ESSTSTTTEASTESSPA*
IP20553.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13947-PA | 119 | CG13947-PA | 3..119 | 1..117 | 640 | 100 | Plus |
| CG12506-PA | 107 | CG12506-PA | 3..107 | 1..111 | 351 | 66.7 | Plus |
| CG13946-PA | 99 | CG13946-PA | 3..99 | 1..110 | 325 | 63.1 | Plus |
| lcs-PA | 145 | CG12794-PA | 3..135 | 1..115 | 272 | 54.5 | Plus |
| CG10918-PA | 183 | CG10918-PA | 3..162 | 1..115 | 186 | 38.3 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 403..472 | 16..79 | 165 | 63.5 | Plus |
| CG8157-PB | 113 | CG8157-PB | 3..83 | 3..81 | 158 | 53 | Plus |
| CG8157-PA | 113 | CG8157-PA | 3..83 | 3..81 | 158 | 53 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 482..550 | 16..87 | 153 | 56.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 493..561 | 16..87 | 153 | 56.2 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 411..476 | 18..77 | 149 | 61.4 | Plus |
| CG5172-PD | 172 | CG5172-PD | 60..114 | 22..76 | 149 | 60 | Plus |
| Mur82C-PB | 578 | CG12586-PB | 402..469 | 23..79 | 148 | 59.4 | Plus |
| Hrb87F-PE | 385 | CG12749-PE | 251..317 | 18..79 | 147 | 53.7 | Plus |
| Hrb87F-PD | 385 | CG12749-PD | 251..317 | 18..79 | 147 | 53.7 | Plus |
| Hrb87F-PC | 385 | CG12749-PC | 251..317 | 18..79 | 147 | 53.7 | Plus |
| Hrb87F-PA | 385 | CG12749-PA | 251..317 | 18..79 | 147 | 53.7 | Plus |
| CG5172-PD | 172 | CG5172-PD | 60..130 | 18..89 | 146 | 51.4 | Plus |
| CG9757-PB | 127 | CG9757-PB | 61..126 | 18..79 | 145 | 59.7 | Plus |
| CG9757-PA | 127 | CG9757-PA | 61..126 | 18..79 | 145 | 59.7 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 29..130 | 12..95 | 144 | 41.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 29..130 | 12..95 | 144 | 41.2 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 473..546 | 18..89 | 143 | 50 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 475..533 | 17..77 | 143 | 54.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 454..522 | 18..77 | 142 | 48.6 | Plus |
| CG8157-PB | 113 | CG8157-PB | 36..91 | 19..76 | 141 | 62.7 | Plus |
| CG8157-PA | 113 | CG8157-PA | 36..91 | 19..76 | 141 | 62.7 | Plus |
| CG9757-PB | 127 | CG9757-PB | 41..122 | 13..79 | 140 | 50 | Plus |
| CG9757-PA | 127 | CG9757-PA | 41..122 | 13..79 | 140 | 50 | Plus |
| CG7294-PA | 127 | CG7294-PA | 8..121 | 1..111 | 139 | 37.7 | Plus |
| CG5172-PD | 172 | CG5172-PD | 9..100 | 2..79 | 138 | 42.4 | Plus |
| CG5172-PC | 106 | CG5172-PC | 9..85 | 2..76 | 137 | 46.2 | Plus |
| CG7299-PC | 177 | CG7299-PC | 62..140 | 19..96 | 136 | 47.5 | Plus |
| CG7299-PA | 177 | CG7299-PA | 62..140 | 19..96 | 136 | 47.5 | Plus |
| CG8157-PB | 113 | CG8157-PB | 38..97 | 17..79 | 135 | 60.9 | Plus |
| CG8157-PA | 113 | CG8157-PA | 38..97 | 17..79 | 135 | 60.9 | Plus |
| CG11458-PA | 98 | CG11458-PA | 10..88 | 3..79 | 135 | 49.4 | Plus |
