Clone IP20593 Report

Search the DGRC for IP20593

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:205
Well:93
Vector:pOT2
Associated Gene/TranscriptCG13876-RA
Protein status:IP20593.pep: gold
Sequenced Size:1355

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13876 2008-05-05 Release 5.5 slip selected

Clone Sequence Records

IP20593.complete Sequence

1355 bp assembled on 2009-09-15

GenBank Submission: BT099752.1

> IP20593.complete
CTGGATAATAACAAAAATATCCAGTTTGTTACCGCCAAGTAAACTAGTAT
ATTCCGACATGATGATTTCAGACAGTCAGAAGAAAGGACTGCGGGAGTTA
CTTCTAAATGACAAGAACTTAACTGTTCTGCTACAGTTGGCCAAAGGGGC
CACCAAAAATATGTGCAAAACCGAAGACCCGGAGGAGGCCCTTCGTCTGA
TCACTACACACATTCCAGACATTTACGTACTGCTTTCCAAGCGCGCTATA
AAAAAGGAACTCCTCTTTACGTATTTGAGCAATCGACGCGCTGACGCAGC
CACAGACTTTAGCAAGGCAGACCTCATAGCCAAGGTTATACAGTATTGGA
AGCAGGAGCATAAATCAAGCATAGAGCTTTCCGGAGACCAGACTTCCAGC
TCACTTCATATTCAGAGCGAAGAGGATTATCCCATTCACACGATTGCCCG
CAAGTTCGGCGAGTGGTTCTTCGAACGCTTCAACGCAGACGCCCTTAGTC
TGGTGGATTTATGGGCAGATGCGGCTCTACATCTCACGATCATAGCCAGT
GATGGAATCAATGAGTGGGAGTGTACGACGGCTGCCGAGGTGTTATCGGC
ACTAACGAGCGCTAAGCAGCAGTTTGACTTTTACTTTAATCCAAACCTGA
CGCACGCCGGAATTCAGGGTCGAATGGACTCGTACGGACATTTCTTAGTG
ATCTGCTGCGGCACTCTGCACTCCCGTGATAGCTGCGTCGGAATCTTTGA
ATGTGCCTTCGGGCTTTTTCGGGACCCCTTGGCTGACAACAACTGGAAAC
CCAAAAAAGTGAAGTGCTTCCTTAAAAGTGAAGCTCAGCCCCCAGAGCTG
CACTATCTGTGCTCGAGCGAAACTCTGCAGACAGCTCTGGAGCTGTCAGT
ACCCTCTGATGACTTGAACTAGCGGACTGTTATGTATCAGCCCGTCCACA
TGAAGTATAATTTCAAAAAGAACTGAATACTTACTTGGACAGAACTATAT
TAATCAATTTGCTCTATGAATGTTCTACTTAATATACTCACGAGTTGAAA
CTGCAAGGCGTGGAACAAATGTGTTGACTGCACAAACTGCAAAATTAAAG
AAAACAAATTTATTAAAGAAGTGTGGGTTAAAAAATATGAGCTGAATCTG
ACAGTTAGTCACTCAGATTTGAGCTTATATGCCTGATACTTTCTTCGACC
AACCGAAGATACGATTTTCTATTTTACCAACTAAATTCTTTTTGTTTACT
ATTTAACAAATTCATATTATAATCATTGAGATACTTTTAGGACATCCAAT
TTACGCAAGAAACTATATACATTAAAAAATTGTTATTAAAAAAAAAAAAA
AAAAA

IP20593.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13876-RA 1479 CG13876-RA 64..1402 1..1339 6695 100 Plus
CG7028.a 3066 CG7028.a 2920..3066 1086..940 735 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 206330..207482 185..1337 5765 100 Plus
chr3L 24539361 chr3L 206089..206273 1..185 925 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:43:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 206375..207529 185..1339 5775 100 Plus
3L 28110227 3L 206134..206318 1..185 925 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 206375..207529 185..1339 5775 100 Plus
3L 28103327 3L 206134..206318 1..185 925 100 Plus
Blast to na_te.dros performed 2019-03-16 07:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1380..1434 1302..1250 117 70.9 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 6151..6227 1027..951 115 61 Minus
Stalker 7256 Stalker STALKER 7256bp 6045..6121 1027..951 115 61 Minus

IP20593.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:31:29 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 206089..206273 1..185 100 -> Plus
chr3L 206331..207482 186..1337 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:20 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..864 59..922 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:12:15 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..864 59..922 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:13 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..864 59..922 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:32:57 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..864 59..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-15 12:15:25 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..864 59..922 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:12:15 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..1337 1..1337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:13 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..1337 1..1337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:32:57 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
CG13876-RA 1..1337 1..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:29 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 206134..206318 1..185 100 -> Plus
3L 206376..207527 186..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:29 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 206134..206318 1..185 100 -> Plus
3L 206376..207527 186..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:29 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 206134..206318 1..185 100 -> Plus
3L 206376..207527 186..1337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:13 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 206134..206318 1..185 100 -> Plus
arm_3L 206376..207527 186..1337 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:03:13 Download gff for IP20593.complete
Subject Subject Range Query Range Percent Splice Strand
3L 206376..207527 186..1337 100   Plus
3L 206134..206318 1..185 100 -> Plus

IP20593.hyp Sequence

Translation from 0 to 921

> IP20593.hyp
WIITKISSLLPPSKLVYSDMMISDSQKKGLRELLLNDKNLTVLLQLAKGA
TKNMCKTEDPEEALRLITTHIPDIYVLLSKRAIKKELLFTYLSNRRADAA
TDFSKADLIAKVIQYWKQEHKSSIELSGDQTSSSLHIQSEEDYPIHTIAR
KFGEWFFERFNADALSLVDLWADAALHLTIIASDGINEWECTTAAEVLSA
LTSAKQQFDFYFNPNLTHAGIQGRMDSYGHFLVICCGTLHSRDSCVGIFE
CAFGLFRDPLADNNWKPKKVKCFLKSEAQPPELHYLCSSETLQTALELSV
PSDDLN*

IP20593.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13876-PA 287 CG13876-PA 1..287 20..306 1500 100 Plus

IP20593.pep Sequence

Translation from 1 to 921

> IP20593.pep
WIITKISSLLPPSKLVYSDMMISDSQKKGLRELLLNDKNLTVLLQLAKGA
TKNMCKTEDPEEALRLITTHIPDIYVLLSKRAIKKELLFTYLSNRRADAA
TDFSKADLIAKVIQYWKQEHKSSIELSGDQTSSSLHIQSEEDYPIHTIAR
KFGEWFFERFNADALSLVDLWADAALHLTIIASDGINEWECTTAAEVLSA
LTSAKQQFDFYFNPNLTHAGIQGRMDSYGHFLVICCGTLHSRDSCVGIFE
CAFGLFRDPLADNNWKPKKVKCFLKSEAQPPELHYLCSSETLQTALELSV
PSDDLN*

IP20593.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23870-PA 287 GF23870-PA 1..286 20..305 989 64.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14700-PA 290 GG14700-PA 1..287 20..306 1329 87.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15825-PA 284 GH15825-PA 1..282 20..306 870 56.2 Plus
Dgri\GH22672-PA 125 GH22672-PA 1..125 168..293 355 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13876-PA 287 CG13876-PA 1..287 20..306 1500 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12607-PA 290 GI12607-PA 1..290 20..306 877 53.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16113-PA 278 GL16113-PA 1..278 20..306 940 60.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12592-PA 278 GA12592-PA 1..278 20..306 945 60.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14316-PA 286 GM14316-PA 1..286 20..306 1396 92.3 Plus
Dsec\GM17706-PA 312 GM17706-PA 1..181 20..200 876 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13553-PA 249 GD13553-PA 1..249 21..269 1133 88.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12730-PA 291 GJ12730-PA 1..291 20..306 887 55.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21063-PA 287 GE21063-PA 1..287 20..306 1368 88.5 Plus