IP20607.complete Sequence
659 bp assembled on 2008-05-27
GenBank Submission: BT032950
> IP20607.complete
CCAGCGAGAAGATGTCGTCGATTTCTACGATCATTGGATTGTGTCTTTTG
TTCTTTATGCTGAGCAATGTGGATGCTTATGGGCAAAAATGTAGTCCAGT
CTTTGGAAATTGCAACATGCATACAGATTGCTGCAGCGGAAAATGCTTAA
CCTACGGCTCACGTTGTGGCTATCCTGCGCACCGTCTTAAAGAAACATAT
TTGAGTGCCAGTGAATTTCAGAGTATCAAAAAACAACGGGCACATTCAAA
CAATGATGAGGTGAAAGTTATTGGTCTACCTAGTGAGTCAGAACCATCGA
ATGTTTTTTTTAAGATTGATTCGGCAGCAAAATGCCACAATGTTGGTGAA
CCCTGCTCCCGGGGTGAAGAATGCTGTAATTTGAGATGTCACTCATATAT
GCACAGATGTGTCACCTAAAGTAATTCATAGCAATGAGGAAACGTGACAG
ACAGCTAATTACCAAAATAATTCAGATTCACTTAGGGCGCGGCCCTTAAT
ATATTCATTGGAAATAATGTTACAACAGCTCTACATTCTGTTCCGTAATT
AATGGTTATAGAAATAAAGGTTTATCCATGCTGAAAACTTGTATATAGTT
TTGTCACAATATCACAATAAATAAATAAACCATACATAAAAAAAAAAAAA
AAAAAAAAA
IP20607.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34034-RB | 769 | CG34034-RB | 132..769 | 1..638 | 3190 | 100 | Plus |
CG34034-RA | 563 | CG34034-RA | 1..353 | 1..353 | 1765 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 17562101..17562384 | 637..354 | 1315 | 97.5 | Minus |
chr3R | 27901430 | chr3R | 17562453..17562694 | 352..111 | 1195 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 17562757..17562866 | 110..1 | 535 | 99.1 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:43:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21738344..21738628 | 638..354 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 21738696..21738938 | 353..111 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 21739001..21739110 | 110..1 | 550 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 21479175..21479459 | 638..354 | 1425 | 100 | Minus |
3R | 31820162 | 3R | 21479527..21479769 | 353..111 | 1215 | 100 | Minus |
3R | 31820162 | 3R | 21479832..21479941 | 110..1 | 550 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 13:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Juan | 4236 | Juan JUAN 4236bp | 82..136 | 636..582 | 122 | 69.1 | Minus |
IP20607.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:20:59 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 17562101..17562384 | 354..637 | 97 | <- | Minus |
chr3R | 17562452..17562694 | 111..353 | 99 | <- | Minus |
chr3R | 17562757..17562866 | 1..110 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:22:07 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..408 | 12..419 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:40:06 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..408 | 12..419 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:16 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..408 | 12..419 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:46:18 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RA | 1..347 | 12..362 | 98 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:12:32 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..408 | 12..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:09:53 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..637 | 1..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:40:06 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..637 | 1..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:16 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..637 | 1..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:46:18 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RA | 1..347 | 12..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:32 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34034-RB | 1..637 | 1..637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:59 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21738345..21738628 | 354..637 | 100 | <- | Minus |
3R | 21738696..21738938 | 111..353 | 100 | <- | Minus |
3R | 21739001..21739110 | 1..110 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:59 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21738345..21738628 | 354..637 | 100 | <- | Minus |
3R | 21738696..21738938 | 111..353 | 100 | <- | Minus |
3R | 21739001..21739110 | 1..110 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:59 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21738345..21738628 | 354..637 | 100 | <- | Minus |
3R | 21738696..21738938 | 111..353 | 100 | <- | Minus |
3R | 21739001..21739110 | 1..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:16 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17564723..17564832 | 1..110 | 100 | | Minus |
arm_3R | 17564067..17564350 | 354..637 | 100 | <- | Minus |
arm_3R | 17564418..17564660 | 111..353 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:22:09 Download gff for
IP20607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21479176..21479459 | 354..637 | 100 | <- | Minus |
3R | 21479527..21479769 | 111..353 | 100 | <- | Minus |
3R | 21479832..21479941 | 1..110 | 100 | | Minus |
IP20607.hyp Sequence
Translation from 2 to 418
> IP20607.hyp
SEKMSSISTIIGLCLLFFMLSNVDAYGQKCSPVFGNCNMHTDCCSGKCLT
YGSRCGYPAHRLKETYLSASEFQSIKKQRAHSNNDEVKVIGLPSESEPSN
VFFKIDSAAKCHNVGEPCSRGEECCNLRCHSYMHRCVT*
IP20607.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34034-PB | 135 | CG34034-PB | 1..135 | 4..138 | 747 | 100 | Plus |
IP20607.pep Sequence
Translation from 2 to 418
> IP20607.pep
SEKMSSISTIIGLCLLFFMLSNVDAYGQKCSPVFGNCNMHTDCCSGKCLT
YGSRCGYPAHRLKETYLSASEFQSIKKQRAHSNNDEVKVIGLPSESEPSN
VFFKIDSAAKCHNVGEPCSRGEECCNLRCHSYMHRCVT*
IP20607.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG22913-PA | 202 | GG22913-PA | 1..122 | 4..121 | 443 | 71.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34034-PB | 135 | CG34034-PB | 1..135 | 4..138 | 747 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM23698-PA | 198 | GM23698-PA | 1..114 | 4..117 | 511 | 85.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18507-PA | 198 | GD18507-PA | 1..114 | 4..117 | 542 | 88.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE24091-PA | 175 | GE24091-PA | 1..84 | 4..86 | 296 | 66.7 | Plus |
Dyak\GE25843-PA | 132 | GE25843-PA | 1..59 | 39..97 | 194 | 59.3 | Plus |