Clone IP20696 Report

Search the DGRC for IP20696

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:206
Well:96
Vector:pOT2
Protein status:IP20696.pep: Imported from assembly
Sequenced Size:816

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rab9Fa 2008-05-05 Release 5.5 slip selected
Rab9Fa 2008-08-15 Release 5.9 accounting
Rab9Fa 2008-12-18 5.12 accounting

Clone Sequence Records

IP20696.complete Sequence

816 bp assembled on 2008-05-14

GenBank Submission: BT032762

> IP20696.complete
CCAATACGACAATCCGTTTAAGATTATCATCCTGGGTGACAGCGGCGTAG
GCAAAACCTGCCTGCTGATGCGTTTCTCGGATAACCAATTCACCACAAGA
CACCGGAGCACTGTGGGCTTGGATAGAAGGGAGTGCAGCGTGGAGTTTGC
CGATTGGAGGATGGGGAGGATGCTGCAAGTCTGGGACACCTCCGACGACG
AGCGCTTCAAATTGCTGAAGGCGACCCAATGTCGCAGTGCCCATGGCATA
CTGCTCGTCTACGACATAACGTCGTCCAAAAGTTTCCAAAACATCGATGG
CTGGATGAAGGAGATACGGCGCCTGTGTCCGGATAAGGTAACCGTCCTGC
TGGTGGGCAACAAAAGTGATGATCCGAACCATCGCCAGGTGAGCATGGCG
CAGGGGTTCAACTATGCCCATCGTCAGTCAATCTGCTTTGAAGAGGTTTC
CGCCAAAAGTGGAAGGAATGTATATGACATATTTAGCTCGTTGGCAATGG
ACATATATACATATCGTCGTGTACATTGCAACCCGTTCAGCTTGACATCT
TGGCAGGAAGAGGAGGACGCTGCAGAGTCACTGGATTAACCAATTAATCG
AGCTGGCGCAGATCGGCAGAAGGCCAATGACACCAATACCAATCATTTGA
CATTATTATCATTAATATAATATTTTAACATTTCTATAATGTCTACAAGC
TCCGTAAACTTCTTGCCTAATGAAAAAATAAACTATTTGTAATGTGAAAC
GGGAAATTGGCGAAAAATGTACATCAATAAATTACAACAAAAAATTACGA
AAAAAAAAAAAAAAAA

IP20696.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fa-RA 897 Rab9Fa-RA 99..897 1..799 3995 100 Plus
nc_22944.a 799 nc_22944.a 1..799 799..1 3920 99.3 Minus
Rab9D-RA 897 Rab9D-RA 99..897 1..799 3920 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10841474..10842272 799..1 3995 100 Minus
chrX 22417052 chrX 10480553..10481351 1..799 3920 99.4 Plus
chrX 22417052 chrX 10552322..10553120 799..1 3875 99 Minus
chrX 22417052 chrX 10513721..10514519 799..1 3860 98.9 Minus
chrX 22417052 chrX 10308984..10309602 7..630 1680 86 Plus
chrX 22417052 chrX 10842937..10843728 781..1 1330 78.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:43:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10950158..10950958 801..1 4005 100 Minus
X 23542271 X 10589187..10589987 1..801 3930 99.4 Plus
X 23542271 X 10660953..10661753 801..1 3885 99 Minus
X 23542271 X 10622353..10623153 801..1 3870 98.9 Minus
X 23542271 X 10417507..10418125 7..630 1680 86 Plus
X 23542271 X 10951623..10952414 781..1 1330 78.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10958256..10959056 801..1 4005 100 Minus
X 23527363 X 10597285..10598085 1..801 3930 99.3 Plus
X 23527363 X 10669051..10669851 801..1 3885 99 Minus
X 23527363 X 10630451..10631251 801..1 3870 98.8 Minus
X 23527363 X 10425761..10426223 169..630 1550 89.9 Plus
X 23527363 X 10960036..10960349 483..170 760 82.8 Minus
X 23527363 X 10960361..10960512 152..1 400 84.2 Minus
X 23527363 X 10959721..10959807 781..695 330 91.9 Minus
X 23527363 X 10425605..10425692 7..94 290 88.6 Plus
X 23527363 X 10959882..10959970 640..552 220 83.1 Minus
X 23527363 X 10959816..10959861 688..643 185 93.4 Minus
Blast to na_te.dros performed 2019-03-16 13:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 5967..6106 778..650 123 60.7 Minus

IP20696.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:25:57 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10841480..10842272 1..793 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:22:27 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:56:09 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:28:00 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:55:17 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:49 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:20:18 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:56:08 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 73..871 1..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:00 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 73..871 1..799 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:55:17 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 6..594 1..589 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:49 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 73..871 1..799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:25:57 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
X 10950160..10950958 1..799 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:25:57 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
X 10950160..10950958 1..799 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:25:57 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
X 10950160..10950958 1..799 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:00 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10844193..10844991 1..799 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:32:59 Download gff for IP20696.complete
Subject Subject Range Query Range Percent Splice Strand
X 10958258..10959056 1..799 100   Minus

IP20696.hyp Sequence

Translation from 0 to 588

> IP20696.hyp
QYDNPFKIIILGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFA
DWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDG
WMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEEVS
AKSGRNVYDIFSSLAMDIYTYRRVHCNPFSLTSWQEEEDAAESLD*

IP20696.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fa-PA 197 CG32671-PA 3..197 1..195 1038 100 Plus
Rab9D-PA 197 CG32678-PA 3..197 1..195 1019 98.5 Plus
Rab9E-PA 197 CG32673-PA 3..197 1..195 1011 97.4 Plus
Rab9Db-PA 197 CG9807-PA 3..197 1..195 1008 97.4 Plus
RabX2-PA 195 CG2885-PA 4..195 2..195 682 72.3 Plus

IP20696.pep Sequence

Translation from 1 to 588

> IP20696.pep
QYDNPFKIIILGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFA
DWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDG
WMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEEVS
AKSGRNVYDIFSSLAMDIYTYRRVHCNPFSLTSWQEEEDAAESLD*

IP20696.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19340-PA 237 GF19340-PA 3..178 1..178 458 50 Plus
Dana\GF17263-PA 205 GF17263-PA 7..172 1..168 360 42.9 Plus
Dana\GF10843-PA 207 GF10843-PA 5..180 2..177 358 42.7 Plus
Dana\GF20241-PA 204 GF20241-PA 6..170 2..168 344 43.1 Plus
Dana\GF20451-PA 200 GF20451-PA 5..184 2..190 341 38.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18360-PA 218 GG18360-PA 4..191 2..192 543 57.1 Plus
Dere\GG14761-PA 205 GG14761-PA 7..172 1..168 361 42.9 Plus
Dere\GG13365-PA 207 GG13365-PA 5..180 2..177 358 42.7 Plus
Dere\GG19277-PA 204 GG19277-PA 6..170 2..168 337 43.1 Plus
Dere\GG18010-PA 201 GG18010-PA 5..172 2..172 335 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18937-PA 205 GH18937-PA 7..172 1..168 360 42.9 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..180 2..177 359 42.7 Plus
Dgri\GH24326-PA 201 GH24326-PA 4..172 1..172 351 40.7 Plus
Dgri\GH12621-PA 204 GH12621-PA 6..183 2..178 340 42.2 Plus
Dgri\GH12019-PA 202 GH12019-PA 6..167 5..169 306 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fa-PA 197 CG32671-PA 3..197 1..195 1038 100 Plus
Rab9D-PA 197 CG32678-PA 3..197 1..195 1019 98.5 Plus
Rab9E-PA 197 CG32673-PA 3..197 1..195 1011 97.4 Plus
Rab9Db-PA 197 CG9807-PA 3..197 1..195 1008 97.4 Plus
RabX2-PA 195 CG2885-PA 4..195 2..195 682 72.3 Plus
Rab9Fb-PA 214 CG32670-PA 3..194 1..195 562 59.5 Plus
Rab1-PA 205 CG3320-PA 7..172 1..168 352 42.3 Plus
Rab8-PC 207 CG8287-PC 5..180 2..177 349 42.7 Plus
Rab8-PA 207 CG8287-PA 5..180 2..177 349 42.7 Plus
Rab35-PB 201 CG9575-PB 5..172 2..172 340 39.2 Plus
Rab35-PD 201 CG9575-PD 5..172 2..172 340 39.2 Plus
Rab35-PA 201 CG9575-PA 5..172 2..172 340 39.2 Plus
Rab10-PA 204 CG17060-PA 6..167 2..165 332 43.3 Plus
Rab11-PA 214 CG5771-PA 7..173 1..169 304 36.1 Plus
Rab11-PB 214 CG5771-PB 7..173 1..169 304 36.1 Plus
Rab26-PE 410 CG34410-PE 208..375 1..168 302 39.4 Plus
Rab26-PD 410 CG34410-PD 208..375 1..168 302 39.4 Plus
Rab26-PC 410 CG34410-PC 208..375 1..168 302 39.4 Plus
Rab19-PB 219 CG7062-PP3-RB 18..184 2..168 301 36.7 Plus
Rab19-PA 219 CG7062-PA 18..184 2..168 301 36.7 Plus
Rab2-PB 213 CG3269-PB 7..168 6..169 298 36 Plus
Rab2-PA 213 CG3269-PA 7..168 6..169 298 36 Plus
Rab3-PB 220 CG7576-PB 18..178 2..164 295 38 Plus
Rab3-PA 220 CG7576-PA 18..178 2..164 295 38 Plus
Rab14-PD 215 CG4212-PD 8..173 2..169 294 35.7 Plus
Rab14-PA 215 CG4212-PA 8..173 2..169 294 35.7 Plus
Rab14-PB 239 CG4212-PB 32..197 2..169 294 35.7 Plus
Rab35-PC 190 CG9575-PC 8..161 16..172 290 37.6 Plus
Rab30-PD 223 CG9100-PD 8..167 6..168 287 36.8 Plus
Rab30-PC 223 CG9100-PC 8..167 6..168 287 36.8 Plus
Rab30-PB 223 CG9100-PB 8..167 6..168 287 36.8 Plus
Rab30-PA 223 CG9100-PA 8..167 6..168 287 36.8 Plus
RabX4-PA 213 CG31118-PA 9..174 6..172 280 36.3 Plus
Rab4-PA 213 CG4921-PA 5..162 2..161 277 36.9 Plus
Rab4-PB 213 CG4921-PB 5..162 2..161 277 36.9 Plus
Rab6-PB 208 CG6601-PB 6..170 2..165 269 35.9 Plus
Rab6-PA 208 CG6601-PA 6..170 2..165 269 35.9 Plus
Rab39-PB 218 CG12156-PB 6..176 2..169 269 36.6 Plus
Rab39-PA 218 CG12156-PA 6..176 2..169 269 36.6 Plus
Rab21-PC 222 CG17515-PC 14..191 6..181 269 32.4 Plus
Rab21-PD 222 CG17515-PD 14..191 6..181 269 32.4 Plus
Rab27-PC 230 CG14791-PC 8..166 2..157 269 41.5 Plus
Rab5-PI 219 CG3664-PI 30..187 6..165 266 35.6 Plus
Rab5-PH 219 CG3664-PH 30..187 6..165 266 35.6 Plus
Rab5-PG 219 CG3664-PG 30..187 6..165 266 35.6 Plus
Rab5-PE 219 CG3664-PE 30..187 6..165 266 35.6 Plus
Rab5-PC 219 CG3664-PC 30..187 6..165 266 35.6 Plus
Rab5-PD 219 CG3664-PD 30..187 6..165 266 35.6 Plus
Rab5-PF 219 CG3664-PF 30..187 6..165 266 35.6 Plus
Rab5-PB 219 CG3664-PB 30..187 6..165 266 35.6 Plus
Rab5-PA 219 CG3664-PA 30..187 6..165 266 35.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10837-PA 205 GI10837-PA 7..172 1..168 370 43.5 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..180 2..177 358 42.7 Plus
Dmoj\GI14806-PA 201 GI14806-PA 4..172 1..172 345 40.1 Plus
Dmoj\GI11034-PA 204 GI11034-PA 6..183 2..178 345 42.8 Plus
Dmoj\GI23656-PA 214 GI23656-PA 7..173 1..169 305 36.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27164-PA 205 GL27164-PA 7..172 1..168 360 42.9 Plus
Dper\GL15675-PA 207 GL15675-PA 5..180 2..177 356 42.7 Plus
Dper\GL14977-PA 211 GL14977-PA 3..171 6..176 351 40.5 Plus
Dper\GL12921-PA 200 GL12921-PA 5..172 2..172 327 38.6 Plus
Dper\GL22545-PA 219 GL22545-PA 18..184 2..168 308 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17362-PA 205 GA17362-PA 7..172 1..168 360 42.9 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..180 2..177 356 42.7 Plus
Dpse\GA22382-PA 205 GA22382-PA 3..171 6..176 354 40.5 Plus
Dpse\GA26078-PA 204 GA26078-PA 6..170 2..168 337 43.1 Plus
Dpse\GA21885-PA 200 GA21885-PA 5..172 2..172 333 39.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11275-PA 215 GM11275-PA 3..195 1..195 549 58.7 Plus
Dsec\GM11294-PA 206 GM11294-PA 8..169 6..169 463 53 Plus
Dsec\GM11425-PA 169 GM11425-PA 8..161 6..161 452 54.5 Plus
Dsec\GM15089-PA 205 GM15089-PA 7..172 1..168 361 42.9 Plus
Dsec\GM15893-PA 207 GM15893-PA 5..180 2..177 358 42.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11278-PA 215 GD11278-PA 3..191 1..192 551 58.2 Plus
Dsim\GD16021-PA 206 GD16021-PA 8..169 6..169 477 55.5 Plus
Dsim\GD16978-PA 207 GD16978-PA 8..169 6..169 476 55.5 Plus
Dsim\GD19996-PA 205 GD19996-PA 7..172 1..168 361 42.9 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..180 2..177 358 42.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14443-PA 205 GJ14443-PA 7..172 1..168 370 43.5 Plus
Dvir\GJ14874-PA 202 GJ14874-PA 7..168 6..169 359 42.7 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..180 2..177 358 42.7 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 6..183 2..178 340 42.2 Plus
Dvir\GJ19473-PA 201 GJ19473-PA 4..172 1..172 339 39.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20101-PA 216 GK20101-PA 10..171 6..169 369 45.7 Plus
Dwil\GK12772-PA 205 GK12772-PA 7..172 1..168 361 42.9 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..180 2..177 357 42.7 Plus
Dwil\GK25049-PA 204 GK25049-PA 6..183 2..178 340 42.2 Plus
Dwil\GK16335-PA 200 GK16335-PA 5..172 2..172 339 39.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17848-PA 219 GE17848-PA 3..191 1..192 510 54.7 Plus
Dyak\Rab1-PA 205 GE25003-PA 7..172 1..168 361 42.9 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..180 2..177 358 42.7 Plus
Dyak\GE17866-PA 204 GE17866-PA 6..170 2..168 337 43.1 Plus
Dyak\GE17342-PA 201 GE17342-PA 5..172 2..172 335 39.2 Plus