Clone IP20889 Report

Search the DGRC for IP20889

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:208
Well:89
Vector:pOT2
Associated Gene/TranscriptSas-RA
Protein status:IP20889.pep: gold
Sequenced Size:1193

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Sas 2008-05-05 Release 5.5 slip selected
Sas 2008-08-15 Release 5.9 accounting
Sas 2008-12-18 5.12 accounting

Clone Sequence Records

IP20889.complete Sequence

1193 bp assembled on 2008-05-14

GenBank Submission: BT032769

> IP20889.complete
CGGGTTTCAATTTAATCAAAATGCTGTTAAACGATATCATAAGCGGAAAA
TTAGTTGATTCCGTCTATATTATAGCGGAAATTGGCCAAAATCACCAAGG
TTGTGTGGAAACAGCGAAGAAAATGATATGGGAGGCCAAAAAAGCCGGTT
GCCACTGCGTCAAGTTTCAAAAATCGGATTTGCCAGCAAAGTTTACGAGA
TCCGCTCTAGATCGCGAATATATCAGTGATCACGCCTGGGGAAAAACGTA
CGGGGAGCACAAGGAGTACCTGGAGTTCTCCAAAGATCAGTATCTCCAGC
TGCAGGCCCACTGCAAGGAGTTAAATGTGGACTTTACGGCTTCCGCCATG
GATGAGAGATCGTTGGAGTTCCTTTCTGCTCTAAATGTTCCCTTCATCAA
AATTGGTTCCGGAGACGCAAACAACTTTCCGCTTCTCAAAAAGGCCGCCA
ATTTGAACTTGCCCCTGGTGATCTCCACCGGAATGCAGACTATGCAAACT
GTGGAGAGGATTGTGCAAACTATGCGGGAGTCAGGAAAAGAGGACTACGC
TCTAATGCACTGCGTTTCATCGTACCCAACTGACCCAAAAGATTGCAGCT
TGCAGTTGATATCCGTCTTAAGGACACGCTTTCCCAATGTGGCAATTGGG
TACTCGGGTCATGAGCTGGGAGTGATCATTAGCCAGGCCGCCGTCTTGCT
GGGAGCACGCATAGTGGAGCGCCACTTTACGCTGGACAAGAGTCAGAAGG
GCTCCGATCATCGCTGCTCCCTAGAGCCGCAAGAATTAAAAGCTCTGACT
ACAGCCATCACCAACTTCAAACTCTCTTCAGTTCCCATGCCTCCACAAGA
AATAGTTAAAAAGTTAAATGGAGATGAGGAACTAGAGGCAGCTCTTCAGC
ACGTTGAGTCTAAAACCATTTTGCCGTGCGAGCTGCCCTGCCGAAATAAA
CTGGGCAAATCTATTGTGGCAGCTAGGAATCTCAATAAGGGTTACAGGTT
GCAATTGGCAGATATGGCCATTAAAGTCAGTGAACCCAGCGGCCTGACAG
CGGAGGATTTCTTGGACTTGGTAGGCAAGGAATTGGCAGACAATATTGGT
GAGGATGAACCCATACTTGGGAATAGTATAATCAATTGAATCATGGGTTG
GGAATTTAAATACACTTGTAAATGAAAAAAAAAAAAAAAAAAA

IP20889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
DmSAS-RA 1226 DmSAS-RA 15..1190 1..1176 5880 100 Plus
CG5641-RA 1421 CG5641-RA 1332..1421 1176..1087 450 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8252440..8253259 355..1174 4085 99.9 Plus
chr3R 27901430 chr3R 8251980..8252335 1..356 1780 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:44:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12427052..12427873 355..1176 4110 100 Plus
3R 32079331 3R 12426592..12426947 1..356 1780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12167883..12168704 355..1176 4110 100 Plus
3R 31820162 3R 12167423..12167778 1..356 1780 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:29:55 has no hits.

IP20889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:31:03 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8251980..8252335 1..356 100 -> Plus
chr3R 8252442..8253259 357..1174 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:22:49 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 1..1119 21..1139 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:56:12 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 1..1119 21..1139 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:14 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 1..1119 21..1139 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:55:20 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 1..1119 21..1139 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:59 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 1..1119 21..1139 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:20:24 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 15..1188 1..1174 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:56:12 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 15..1188 1..1174 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:14 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 15..1188 1..1174 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:55:21 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 15..1188 1..1174 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:59 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
Sas-RA 15..1188 1..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:03 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12426592..12426947 1..356 100 -> Plus
3R 12427054..12427871 357..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:03 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12426592..12426947 1..356 100 -> Plus
3R 12427054..12427871 357..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:03 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12426592..12426947 1..356 100 -> Plus
3R 12427054..12427871 357..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:14 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8252314..8252669 1..356 100 -> Plus
arm_3R 8252776..8253593 357..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:01 Download gff for IP20889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12167423..12167778 1..356 100 -> Plus
3R 12167885..12168702 357..1174 100   Plus

IP20889.hyp Sequence

Translation from 2 to 1138

> IP20889.hyp
GFNLIKMLLNDIISGKLVDSVYIIAEIGQNHQGCVETAKKMIWEAKKAGC
HCVKFQKSDLPAKFTRSALDREYISDHAWGKTYGEHKEYLEFSKDQYLQL
QAHCKELNVDFTASAMDERSLEFLSALNVPFIKIGSGDANNFPLLKKAAN
LNLPLVISTGMQTMQTVERIVQTMRESGKEDYALMHCVSSYPTDPKDCSL
QLISVLRTRFPNVAIGYSGHELGVIISQAAVLLGARIVERHFTLDKSQKG
SDHRCSLEPQELKALTTAITNFKLSSVPMPPQEIVKKLNGDEELEAALQH
VESKTILPCELPCRNKLGKSIVAARNLNKGYRLQLADMAIKVSEPSGLTA
EDFLDLVGKELADNIGEDEPILGNSIIN*

IP20889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sas-PA 372 CG5232-PA 1..372 7..378 1910 100 Plus

IP20889.pep Sequence

Translation from 2 to 1138

> IP20889.pep
GFNLIKMLLNDIISGKLVDSVYIIAEIGQNHQGCVETAKKMIWEAKKAGC
HCVKFQKSDLPAKFTRSALDREYISDHAWGKTYGEHKEYLEFSKDQYLQL
QAHCKELNVDFTASAMDERSLEFLSALNVPFIKIGSGDANNFPLLKKAAN
LNLPLVISTGMQTMQTVERIVQTMRESGKEDYALMHCVSSYPTDPKDCSL
QLISVLRTRFPNVAIGYSGHELGVIISQAAVLLGARIVERHFTLDKSQKG
SDHRCSLEPQELKALTTAITNFKLSSVPMPPQEIVKKLNGDEELEAALQH
VESKTILPCELPCRNKLGKSIVAARNLNKGYRLQLADMAIKVSEPSGLTA
EDFLDLVGKELADNIGEDEPILGNSIIN*

IP20889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17956-PA 338 GF17956-PA 1..337 41..377 1332 71.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18905-PA 372 GG18905-PA 1..372 7..378 1744 86 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13892-PA 376 GH13892-PA 1..372 7..374 1370 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
NANS-PA 372 CG5232-PA 1..372 7..378 1910 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24828-PA 377 GI24828-PA 1..370 8..371 1344 67.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27311-PA 372 GL27311-PA 1..370 7..376 1484 73.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18754-PA 515 GA18754-PA 144..513 7..376 1466 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24031-PA 372 GM24031-PA 1..372 7..378 1900 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18832-PA 372 GD18832-PA 1..372 7..378 1899 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24471-PA 377 GJ24471-PA 1..376 8..377 1287 64.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14403-PA 371 GK14403-PA 1..370 7..377 1337 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26192-PA 372 GE26192-PA 1..371 7..377 1753 87.1 Plus