Clone IP21077 Report

Search the DGRC for IP21077

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:210
Well:77
Vector:pOT2
Protein status:IP21077.pep: Imported from assembly
Sequenced Size:1162

Clone Sequence Records

IP21077.complete Sequence

1162 bp assembled on 2009-03-12

GenBank Submission: BT072885.1

> IP21077.complete
TGGCTTCGTTCCGGTTTCAATTGTTGCAGCTCCTAGTGGTTCTCAGCCAA
GGTTGGGCCAACCTCAACGTGCAGAACAACTATAGAAACATGATGGTCCG
ACTGGCCACTAACAAGGCAGCGCTCGCCGGTATTCAAGTCCTCCGCGAGG
GACGCGTGGAGGTGAGCTTTGACTTTGGCGCCTCATGGGGTACGATCTGC
AGCACTTCGTGGAGCATGCGGGAGGCAAATGTGGTGTGCCGACAGCTAGG
ATTGGGCTACGCTTCCAAGGCAAGCCAGGGAACGGAGCACGGGGATAGCC
GGAAGTATCCCTGGGGCATGGTGGGCACTCTGTGCAGGGGAACCGAGCGT
CGCCTAGCCGACTGCATCCGGGAGTCCCACTACCCGAACCTCTGCAATGC
CAGAAACCATAATGTCAGCATTGCGGCCTGTGTTAGCCATTCGGCTGACC
TGGAGATCGGACTGGTGGACATCGAGAGAACCGCCCGCCTGGAGGCCGTG
CCCATGTCGCGGCTCACATGCGCCATGGAAGAGCACTGTGTTTCCGCCGA
CGCTTACGAGATCCGAAGGACGAATCCGCACGCTGCGAGGATACTGCTTC
GCTTTTCCGTTAAGGCTTCCAATGTGGGCACCGCCGATGTAAGCCCATAC
GCTAACTACAAGGAATGGGTATGGCACCAGTGCCACAGACACTACCACAG
CATGAATGTTTTTGCCACCTTTGATGTTTACGACCTCAACTACCGGAAGG
TGGCCCAGGGGCACAAGGCCTCCTTTTGCCTGATGGACAGTGAATGCCGG
CCAGGAGTACGGCAAAAGTACACCTGTGGCAACACCACCCAAGGCATTTC
CGTGGGCTGCGCAGACACCTACACCGATGTGTTGGACTGCCAGTGGGTGG
ATGTTACCCGAGTTCCCATCAACCGACGCTACATCCTGCGAGTGGCCCTC
AATCCCGAGTACAAGCTGGGAGAGATATCCTTCGAGAACAACGGAGCTGA
GTGCCTTCTTGACTACACTGGCGTACGGCAGACGACAAGGATTTTCAACT
GTCGGCGAAAGCCGCTTTGGTTTAAGATTTGATTTTGTGTACAGTTTAGA
AAGTAAAATAGCGGTATGAGCCATCTCTGGTGACCTCTTAGATACTAAAA
AAAAAAAAAAAA

IP21077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
lox-RA 1488 lox-RA 185..1332 1..1148 5740 100 Plus
lox.a 1855 lox.a 552..1699 1..1148 5740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27281203..27282046 844..1 4175 99.6 Minus
chr3R 27901430 chr3R 27280846..27281150 1146..842 1495 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:44:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31458877..31459720 844..1 4220 100 Minus
3R 32079331 3R 31458518..31458824 1148..842 1535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31199708..31200551 844..1 4220 100 Minus
3R 31820162 3R 31199349..31199655 1148..842 1535 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:53:41 has no hits.

IP21077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:54:23 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27281204..27282046 1..843 99   Minus
chr3R 27280846..27281148 844..1146 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:52:36 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 2..1083 1..1082 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:40:06 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 2..1083 1..1082 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:48:59 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 2..1083 1..1082 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:14:35 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 2..1083 1..1082 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-12 12:23:46 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 8..1089 1..1082 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:40:06 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 150..1295 1..1146 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:48:59 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 150..1295 1..1146 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:14:35 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
lox-RA 150..1295 1..1146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:23 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31458520..31458822 844..1146 100 <- Minus
3R 31458878..31459720 1..843 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:23 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31458520..31458822 844..1146 100 <- Minus
3R 31458878..31459720 1..843 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:23 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31458520..31458822 844..1146 100 <- Minus
3R 31458878..31459720 1..843 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:48:59 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27284242..27284544 844..1146 100 <- Minus
arm_3R 27284600..27285442 1..843 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:14:20 Download gff for IP21077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31199351..31199653 844..1146 100 <- Minus
3R 31199709..31200551 1..843 100   Minus

IP21077.pep Sequence

Translation from 2 to 1081

> IP21077.pep
ASFRFQLLQLLVVLSQGWANLNVQNNYRNMMVRLATNKAALAGIQVLREG
RVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDSR
KYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAACVSHSADL
EIGLVDIERTARLEAVPMSRLTCAMEEHCVSADAYEIRRTNPHAARILLR
FSVKASNVGTADVSPYANYKEWVWHQCHRHYHSMNVFATFDVYDLNYRKV
AQGHKASFCLMDSECRPGVRQKYTCGNTTQGISVGCADTYTDVLDCQWVD
VTRVPINRRYILRVALNPEYKLGEISFENNGAECLLDYTGVRQTTRIFNC
RRKPLWFKI*

IP21077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17195-PA 363 GF17195-PA 7..363 5..359 1621 82.6 Plus
Dana\GF11619-PA 500 GF11619-PA 184..496 41..351 761 48.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11867-PA 363 GG11867-PA 2..363 1..359 1811 95 Plus
Dere\GG20745-PA 511 GG20745-PA 203..507 49..351 740 48.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21604-PA 359 GH21604-PA 11..358 7..356 1263 68.3 Plus
Dgri\GH20778-PA 500 GH20778-PA 184..496 41..351 755 48.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Loxl1-PA 360 CG11335-PA 2..360 1..359 1930 100 Plus
Loxl2-PA 511 CG4402-PA 203..507 49..351 745 48.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10563-PA 359 GI10563-PA 21..357 20..355 1290 71.2 Plus
Dmoj\GI20863-PA 501 GI20863-PA 185..497 41..351 766 49.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27237-PA 365 GL27237-PA 25..365 19..359 1648 85.9 Plus
Dper\GL17518-PA 498 GL17518-PA 182..494 41..351 756 49.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10929-PA 365 GA10929-PA 25..365 19..359 1644 85.6 Plus
Dpse\GA18160-PA 498 GA18160-PA 182..494 41..351 756 49.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12086-PA 326 GM12086-PA 2..326 1..359 1653 87.8 Plus
Dsec\GM15688-PA 511 GM15688-PA 203..507 49..351 745 48.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16425-PA 363 GD16425-PA 2..363 1..359 1914 98.1 Plus
Dsim\GD25167-PA 500 GD25167-PA 192..496 49..351 749 48.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22918-PA 361 GJ22918-PA 26..359 22..355 1323 72.8 Plus
Dvir\GJ20598-PA 500 GJ20598-PA 184..496 41..351 767 49.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22420-PA 367 GK22420-PA 28..367 21..359 1510 80.6 Plus
Dwil\GK15654-PA 505 GK15654-PA 189..501 41..351 759 48.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23316-PA 363 GE23316-PA 2..363 1..359 1794 94.5 Plus
Dyak\GE13677-PA 512 GE13677-PA 204..508 49..351 760 49.2 Plus

IP21077.hyp Sequence

Translation from 2 to 1081

> IP21077.hyp
ASFRFQLLQLLVVLSQGWANLNVQNNYRNMMVRLATNKAALAGIQVLREG
RVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDSR
KYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAACVSHSADL
EIGLVDIERTARLEAVPMSRLTCAMEEHCVSADAYEIRRTNPHAARILLR
FSVKASNVGTADVSPYANYKEWVWHQCHRHYHSMNVFATFDVYDLNYRKV
AQGHKASFCLMDSECRPGVRQKYTCGNTTQGISVGCADTYTDVLDCQWVD
VTRVPINRRYILRVALNPEYKLGEISFENNGAECLLDYTGVRQTTRIFNC
RRKPLWFKI*

IP21077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
lox-PA 360 CG11335-PA 2..360 1..359 1930 100 Plus
lox2-PA 511 CG4402-PA 203..507 49..351 745 48.2 Plus