Clone IP21164 Report

Search the DGRC for IP21164

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:211
Well:64
Vector:pOT2
Associated Gene/TranscriptTango2-RB
Protein status:IP21164.pep: gold
Sequenced Size:1598

Clone Sequence Records

IP21164.complete Sequence

1598 bp assembled on 2009-07-30

GenBank Submission: BT089002.1

> IP21164.complete
AAACAAGGCAACCCGGTCATTGAAATTTCAGAAAATACTGCTTTGTTTGC
GTTAACGGGAATGCTTTTTGCCCCGTAGATATGTATATATCACATAGAGG
CACGGCTCACAGAGAACACCCACCAATCCAAACCATTTACATTTACCACT
TAGATTAGCTGGTCTCGCAAACAACGGATAAGACTGTATATCAGCTGTAC
GTACGTACGGCTATTTGGTGATAAAACCGGCGCTATAGTTCCACTGCCAC
AAAGTAACAAAGAGAAGACTGAGCCGAACAACCTGCCATTTTGATACCGA
CGCCCCACCGAGATTAAAGCCCACTTTTCCGGATCCCATTCGCAGTTGTC
CCACAACCTCAAGGCACTACAAATCGCAACAATAGCCAAATAAGTATAGG
ATTCCGACGATGTGCGTGATATTCTTTTGTGCGGACTCGAATCCGCAACC
GGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTCTTTGCCC
GCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGTTTACGGA
GGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGGCGATCGG
CCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTGACCGGCG
AGCCCAAGCCACGCGATGCAGTTGCGCACAAAAACATTTTGCAACCGCAT
AATCACAACAGCAACAGCACCGGCATTAACCTTTGCCCCAAGACCACCAC
CTCCAACAGCTACCGTCATCCGAATCCGAATCCAATTCAGAACCCGAATA
CGAATCCGAGTAGGGGGCAATCGAATAACGAACATTTCTTACTAGGGCGC
GGCATGATTGTGGCGGACTATGTTACCCGGGCGGACGAGGAGCACAGCAT
CCTGAACTACAACGAAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCT
TCAACTTTGTGTCCATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTG
AAGCTGCTGAGCAATGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGA
GTGCTACGGATTTGGCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGC
GTCATGGCAAACAGGAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCC
AGCGTGGAGACTCTGTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCA
CAAATTCTGGCCGGACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCG
AGGGATTGAGTTCCCTAAACGTCCATATCGAAGAGCATGCCTATGGCAGC
CGTACACACTCCGTTGTCCTGGTGGACAGCGAGAATAAGATGCACTTCAT
TGAGGAGACAATGACTGGATTGGATCCGCACGGCGAATGGAACAAGACCC
ACATTGAAAAGGATTTTCAAAACGGCGTTTGACCACGGACAGGATGACGC
AACTTCTTGACGCAACTATCTCGTTCGAAGACTTTCCTCTTTTGTAGAAT
AACCTAATTGGCTAATATTCTACCAATCTGTATTTTGACTCTGGCATTTG
CGATAATAAATAGTCATATTTACTATATCTTTAAAAAAAAAAAAAAAA

IP21164.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RA 1547 Tango2-RA 764..1504 845..1585 3705 100 Plus
Tango2.a 1387 Tango2.a 638..1378 845..1585 3705 100 Plus
Tango2-RA 1547 Tango2-RA 91..764 1..674 3370 100 Plus
Tango2.a 1387 Tango2.a 118..638 154..674 2605 100 Plus
Tango2.a 1387 Tango2.a 36..117 1..82 410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13509332..13509939 975..1582 3040 100 Plus
chrX 22417052 chrX 13507761..13508312 1..552 2760 100 Plus
chrX 22417052 chrX 13508837..13509138 674..975 1510 100 Plus
chrX 22417052 chrX 13508548..13508672 550..674 625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:44:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619206 975..1585 3055 100 Plus
X 23542271 X 13617025..13617576 1..552 2760 100 Plus
X 23542271 X 13618101..13618402 674..975 1510 100 Plus
X 23542271 X 13617812..13617936 550..674 625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13626694..13627304 975..1585 3055 100 Plus
X 23527363 X 13625123..13625674 1..552 2760 100 Plus
X 23527363 X 13626199..13626500 674..975 1510 100 Plus
X 23527363 X 13625910..13626034 550..674 625 100 Plus
Blast to na_te.dros performed 2019-03-16 18:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2390 691..765 125 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6842 691..763 124 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2412 692..760 122 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6694..6815 658..782 122 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2384..2451 691..760 120 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2431 691..758 117 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6823 691..765 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2598..2728 706..835 112 58.2 Plus

IP21164.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:15:25 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13507761..13508311 1..551 100 -> Plus
chrX 13508550..13508672 552..674 100 -> Plus
chrX 13508838..13509138 675..975 86 -> Plus
chrX 13509333..13509939 976..1582 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:25 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 1..264 410..673 100 == Plus
Tango2-RA 265..852 845..1432 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:53:16 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 1..264 410..673 100 == Plus
Tango2-RA 265..852 845..1432 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:12 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RB 1..1023 410..1432 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:49 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RB 1..1023 410..1432 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-30 17:04:39 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 34..706 1..673 100 == Plus
Tango2-RA 707..1444 845..1582 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:53:16 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 34..706 1..673 100 == Plus
Tango2-RA 707..1444 845..1582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:12 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RD 37..1618 1..1582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:49 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RD 37..1618 1..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:15:25 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
X 13617025..13617575 1..551 100 -> Plus
X 13617814..13617936 552..674 100 -> Plus
X 13618102..13618402 675..975 100 -> Plus
X 13618597..13619203 976..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:15:25 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
X 13617025..13617575 1..551 100 -> Plus
X 13617814..13617936 552..674 100 -> Plus
X 13618102..13618402 675..975 100 -> Plus
X 13618597..13619203 976..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:15:25 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
X 13617025..13617575 1..551 100 -> Plus
X 13617814..13617936 552..674 100 -> Plus
X 13618102..13618402 675..975 100 -> Plus
X 13618597..13619203 976..1582 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:12 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13511847..13511969 552..674 100 -> Plus
arm_X 13512135..13512435 675..975 100 -> Plus
arm_X 13511058..13511608 1..551 100 -> Plus
arm_X 13512630..13513236 976..1582 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:44:09 Download gff for IP21164.complete
Subject Subject Range Query Range Percent Splice Strand
X 13625123..13625673 1..551 100 -> Plus
X 13625912..13626034 552..674 100 -> Plus
X 13626200..13626500 675..975 100 -> Plus
X 13626695..13627301 976..1582 100   Plus

IP21164.pep Sequence

Translation from 409 to 1431

> IP21164.pep
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVAHKNILQPHNHN
SNSTGINLCPKTTTSNSYRHPNPNPIQNPNTNPSRGQSNNEHFLLGRGMI
VADYVTRADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLL
SNVPPTLEDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVE
TLSAQLMQLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTH
SVVLVDSENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGV*

IP21164.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21807-PA 349 GF21807-PA 1..346 1..339 1330 73.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17797-PA 334 GG17797-PA 1..334 1..340 1548 87.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11912-PA 282 GH11912-PA 1..277 1..334 945 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-PD 340 CG11176-PD 1..340 1..340 1837 100 Plus
Tango2-PB 340 CG11176-PB 1..340 1..340 1837 100 Plus
Tango2-PC 283 CG11176-PC 1..283 1..340 1389 81.2 Plus
Tango2-PA 283 CG11176-PA 1..283 1..340 1389 81.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15520-PA 282 GI15520-PA 88..281 145..338 787 72.2 Plus
Dmoj\GI15520-PA 282 GI15520-PA 1..94 1..94 362 78.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22571-PA 329 GL22571-PA 1..306 1..318 1066 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10818-PA 326 GA10818-PA 1..303 1..318 1065 67 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17622-PA 326 GM17622-PA 1..326 1..340 1658 92.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19277-PA 282 GJ19277-PA 1..281 1..338 1076 62.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10209-PA 277 GK10209-PA 88..277 145..336 720 68.8 Plus
Dwil\GK10209-PA 277 GK10209-PA 1..94 1..94 385 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17093-PA 330 GE17093-PA 1..330 1..340 1541 85.9 Plus

IP21164.hyp Sequence

Translation from 409 to 1431

> IP21164.hyp
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVAHKNILQPHNHN
SNSTGINLCPKTTTSNSYRHPNPNPIQNPNTNPSRGQSNNEHFLLGRGMI
VADYVTRADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLL
SNVPPTLEDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVE
TLSAQLMQLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTH
SVVLVDSENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGV*

IP21164.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-PD 340 CG11176-PD 1..340 1..340 1837 100 Plus
Tango2-PB 340 CG11176-PB 1..340 1..340 1837 100 Plus
Tango2-PC 283 CG11176-PC 1..283 1..340 1389 81.2 Plus
Tango2-PA 283 CG11176-PA 1..283 1..340 1389 81.2 Plus