Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP21261.complete Sequence
1099 bp assembled on 2008-05-14
GenBank Submission: BT032969
> IP21261.complete
TTGATTCACATCTCCAAGCGAATATTACTTAATATTATATTAATTAATAT
ATTAATTTGTAAAGCACAGCATTTTCAAGGTTTTCCTAACGAAACAATGG
ATTTCAAGAAGCTGAAGAAAATGGAGGAGGTGGTGCGCATCGGCGGCAAA
GGATCTATGCGCCGCAAGCATAAGAGATTCCCATCCTCGGCTGCGGCCGA
GAAGCGCGTGCAAGCCACATTGGCCATGTTGCCGTTGAAGAATATCGACG
AAATCGAGGAGGTGACCATCGAGTTCACCAATTCCAGTAAGGTTGTGTTA
ACCATGCCCAGGGTTCAGAGCACCGCTGGCAATTCTTTCTTCGTGGTTAG
TGGCGATTTCGTGCGCAAGTCGTCAACAGCTGGCCCATCGAAAGTGGCCA
AGGCAGCCAATGCGCCCAAGGCACCCATGCCACCTAAGCCACCCAAGCCG
GAAGCTTTTTCCGACAAAAAGCCAGAATCAGAGGAGTCCATTAAGGTGGC
CAAGAAGCCCAAGAAGCCGCGCAATCGTGTTCGTCCTCGCAACAAGAAGG
TCCAAATGATGCTCTCCAAAAACAAAGAGGACGCAGCCATGGCTGGCTGG
GATTCGGAGCCGAAGCTTAGCAATGGTAAACCAATTTTGATCTCCTCTGA
AGATGGCAGCGATCCGGATAATGAGAAGGTGCCATCGGATGAGTCTGATG
TGGATCGGACCATAGTCTGCGACAAAGATTCGCTGGGAAGCTTCGGCGAT
GATTCCGACGGCAAGGAGGACGTTGACACTACGGAGTCGATCTACCTGTC
CTCCTACTCCAATTACTATTATTTGACGGAGCAGCTCTATCCAAATACTT
ATCGCGTTCAGGTCTCAGAGGACGAAGATTAGGCATATTCATTTGTTGCT
ACATTTGTACCAATTTCAAAAATAAATCGTATGAATTGAGAAAGTTGAGA
CAGAAAAAGGTTCCATATTCTATAGATTTGTACTTTAATCTCTTGGTGTT
TATTGAAAGCATTGGTTTTCTCTACACTTATGGAAATTTTAATGATCTAT
AGTTCCAAAATAAAAAAAAGTTATAAATTTGAAAAAAAAAAAAAAAAAA
IP21261.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13402.a | 1067 | CG13402.a | 2..1067 | 1..1066 | 5330 | 100 | Plus |
CG32601-RA | 980 | CG32601-RA | 26..957 | 1..929 | 3450 | 91.5 | Plus |
CG32598-RA | 988 | CG32598-RA | 26..957 | 1..929 | 3405 | 91.2 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 14062041..14063043 | 1080..78 | 4910 | 99.3 | Minus |
chrX | 22417052 | chrX | 14269539..14270393 | 78..929 | 3160 | 91.6 | Plus |
chrX | 22417052 | chrX | 14206737..14207591 | 929..78 | 3130 | 91.3 | Minus |
chrX | 22417052 | chrX | 14271446..14271983 | 398..929 | 1825 | 90.1 | Plus |
chrX | 22417052 | chrX | 14205248..14205614 | 929..566 | 1320 | 91.3 | Minus |
chrX | 22417052 | chrX | 14271069..14271441 | 78..447 | 1020 | 85.5 | Plus |
chrX | 22417052 | chrX | 14205679..14206024 | 420..78 | 930 | 85.3 | Minus |
chrX | 22417052 | chrX | 14063094..14063174 | 81..1 | 405 | 100 | Minus |
chrX | 22417052 | chrX | 15466633..15466808 | 587..764 | 355 | 82.1 | Plus |
chrX | 22417052 | chrX | 14206075..14206155 | 81..1 | 330 | 93.8 | Minus |
chrX | 22417052 | chrX | 14207642..14207722 | 81..1 | 300 | 91.4 | Minus |
chrX | 22417052 | chrX | 14269408..14269488 | 1..81 | 300 | 91.4 | Plus |
chrX | 22417052 | chrX | 14205611..14205710 | 512..416 | 270 | 87 | Minus |
chrX | 22417052 | chrX | 14270938..14271018 | 1..81 | 270 | 88.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:45:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14171487..14172489 | 1080..78 | 5015 | 100 | Minus |
X | 23542271 | X | 14378958..14379812 | 78..929 | 3160 | 91.6 | Plus |
X | 23542271 | X | 14316144..14316998 | 929..78 | 3115 | 91.2 | Minus |
X | 23542271 | X | 14380865..14381402 | 398..929 | 1810 | 90 | Plus |
X | 23542271 | X | 14314655..14315021 | 929..566 | 1320 | 91.3 | Minus |
X | 23542271 | X | 14380488..14380860 | 78..447 | 1020 | 85.5 | Plus |
X | 23542271 | X | 14315096..14315431 | 410..78 | 925 | 85.7 | Minus |
X | 23542271 | X | 14172540..14172620 | 81..1 | 405 | 100 | Minus |
X | 23542271 | X | 15576746..15576921 | 587..764 | 355 | 82.1 | Plus |
X | 23542271 | X | 14315482..14315562 | 81..1 | 330 | 93.8 | Minus |
X | 23542271 | X | 14317049..14317129 | 81..1 | 300 | 91.4 | Minus |
X | 23542271 | X | 14378827..14378907 | 1..81 | 300 | 91.4 | Plus |
X | 23542271 | X | 14380357..14380437 | 1..81 | 285 | 90.1 | Plus |
X | 23542271 | X | 14315018..14315117 | 512..416 | 255 | 86 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 14179585..14180587 | 1080..78 | 5015 | 100 | Minus |
X | 23527363 | X | 14387056..14387910 | 78..929 | 3170 | 91.5 | Plus |
X | 23527363 | X | 14324242..14325096 | 929..78 | 3125 | 91.2 | Minus |
X | 23527363 | X | 14388963..14389500 | 398..929 | 1830 | 89.9 | Plus |
X | 23527363 | X | 14322753..14323119 | 929..566 | 1330 | 91.2 | Minus |
X | 23527363 | X | 14388586..14388958 | 78..447 | 1030 | 85.5 | Plus |
X | 23527363 | X | 14323194..14323529 | 410..78 | 935 | 85.7 | Minus |
X | 23527363 | X | 14180638..14180718 | 81..1 | 405 | 100 | Minus |
X | 23527363 | X | 15584844..15584942 | 587..685 | 345 | 89.8 | Plus |
X | 23527363 | X | 14323580..14323660 | 81..1 | 330 | 93.8 | Minus |
X | 23527363 | X | 14386925..14387005 | 1..81 | 300 | 91.3 | Plus |
X | 23527363 | X | 14325147..14325227 | 81..1 | 300 | 91.3 | Minus |
X | 23527363 | X | 14388455..14388535 | 1..81 | 285 | 90.1 | Plus |
X | 23527363 | X | 14323116..14323215 | 512..416 | 265 | 86 | Minus |
X | 23527363 | X | 15585029..15585073 | 885..929 | 165 | 91.1 | Plus |
X | 23527363 | X | 14388917..14388965 | 397..445 | 140 | 85.7 | Plus |
X | 23527363 | X | 15584715..15584766 | 337..388 | 140 | 84.6 | Plus |
Blast to na_te.dros performed on 2019-03-16 11:46:47 has no hits.
IP21261.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:48:02 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 14062070..14063041 | 80..1051 | 99 | <- | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:24:33 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13402-RA | 1..786 | 97..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:55:53 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13402-RA | 1..786 | 97..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:25:04 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaNACtes1-RA | 1..786 | 97..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:54:59 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13402-RA | 1..786 | 97..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:09 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaNACtes1-RA | 1..786 | 97..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:19:55 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13402-RA | 1..847 | 97..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:55:52 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13402-RA | 5..1084 | 1..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:25:04 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaNACtes1-RA | 5..1084 | 1..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:54:59 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13402-RA | 1..847 | 97..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:09 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaNACtes1-RA | 5..1084 | 1..1080 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:02 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14171486..14172487 | 80..1081 | 99 | <- | Minus |
X | 14172542..14172620 | 1..79 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:02 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14171486..14172487 | 80..1081 | 99 | <- | Minus |
X | 14172542..14172620 | 1..79 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:02 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14171486..14172487 | 80..1081 | 99 | <- | Minus |
X | 14172542..14172620 | 1..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:25:04 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14065519..14066520 | 80..1081 | 99 | <- | Minus |
arm_X | 14066575..14066653 | 1..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:32:47 Download gff for
IP21261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14179584..14180585 | 80..1081 | 99 | <- | Minus |
X | 14180640..14180718 | 1..79 | 100 | | Minus |
IP21261.pep Sequence
Translation from 0 to 881
> IP21261.pep
LIHISKRILLNIILINILICKAQHFQGFPNETMDFKKLKKMEEVVRIGGK
GSMRRKHKRFPSSAAAEKRVQATLAMLPLKNIDEIEEVTIEFTNSSKVVL
TMPRVQSTAGNSFFVVSGDFVRKSSTAGPSKVAKAANAPKAPMPPKPPKP
EAFSDKKPESEESIKVAKKPKKPRNRVRPRNKKVQMMLSKNKEDAAMAGW
DSEPKLSNGKPILISSEDGSDPDNEKVPSDESDVDRTIVCDKDSLGSFGD
DSDGKEDVDTTESIYLSSYSNYYYLTEQLYPNTYRVQVSEDED*
IP21261.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF22559-PA | 538 | GF22559-PA | 1..300 | 33..293 | 281 | 34.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17843-PA | 262 | GG17843-PA | 1..262 | 33..293 | 557 | 52.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaNACtes1-PA | 261 | CG13402-PA | 1..261 | 33..293 | 1336 | 100 | Plus |
betaNACtes3-PA | 262 | CG32601-PA | 1..262 | 33..293 | 1137 | 87 | Plus |
betaNACtes6-PA | 262 | CG32598-PA | 1..262 | 33..293 | 1113 | 85.9 | Plus |
betaNACtes4-PA | 263 | CG18313-PA | 1..261 | 33..273 | 932 | 75.1 | Plus |
betaNACtes2-PA | 197 | CG18157-PA | 1..197 | 33..255 | 700 | 68 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM17676-PA | 263 | GM17676-PA | 1..263 | 33..293 | 869 | 73.9 | Plus |
Dsec\GM17553-PA | 216 | GM17553-PA | 1..200 | 33..245 | 654 | 70.6 | Plus |
Dsec\GM24659-PA | 144 | GM24659-PA | 1..128 | 102..245 | 443 | 71.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17171-PA | 257 | GD17171-PA | 1..257 | 33..293 | 900 | 74.6 | Plus |
Dsim\GD24509-PA | 252 | GD24509-PA | 1..206 | 33..252 | 711 | 71 | Plus |
Dsim\GD17170-PA | 252 | GD17170-PA | 1..206 | 33..252 | 683 | 71.5 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10317-PA | 260 | GK10317-PA | 1..236 | 33..258 | 186 | 31.6 | Plus |
Dwil\GK10318-PA | 341 | GK10318-PA | 2..90 | 33..120 | 166 | 39.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17140-PA | 248 | GE17140-PA | 1..248 | 33..293 | 569 | 55.9 | Plus |
IP21261.hyp Sequence
Translation from 0 to 881
> IP21261.hyp
LIHISKRILLNIILINILICKAQHFQGFPNETMDFKKLKKMEEVVRIGGK
GSMRRKHKRFPSSAAAEKRVQATLAMLPLKNIDEIEEVTIEFTNSSKVVL
TMPRVQSTAGNSFFVVSGDFVRKSSTAGPSKVAKAANAPKAPMPPKPPKP
EAFSDKKPESEESIKVAKKPKKPRNRVRPRNKKVQMMLSKNKEDAAMAGW
DSEPKLSNGKPILISSEDGSDPDNEKVPSDESDVDRTIVCDKDSLGSFGD
DSDGKEDVDTTESIYLSSYSNYYYLTEQLYPNTYRVQVSEDED*
IP21261.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaNACtes1-PA | 261 | CG13402-PA | 1..261 | 33..293 | 1336 | 100 | Plus |
betaNACtes3-PA | 262 | CG32601-PA | 1..262 | 33..293 | 1137 | 87 | Plus |
betaNACtes6-PA | 262 | CG32598-PA | 1..262 | 33..293 | 1113 | 85.9 | Plus |
betaNACtes4-PA | 263 | CG18313-PA | 1..261 | 33..273 | 932 | 75.1 | Plus |
betaNACtes2-PA | 197 | CG18157-PA | 1..197 | 33..255 | 700 | 68 | Plus |