Clone IP21342 Report

Search the DGRC for IP21342

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:213
Well:42
Vector:pOT2
Associated Gene/TranscriptCG42749-RC
Protein status:IP21342.pep: gold
Sequenced Size:1400

Clone Sequence Records

IP21342.complete Sequence

1400 bp assembled on 2009-05-01

GenBank Submission: BT082123.1

> IP21342.complete
GCTGCGCAAACGCAAAGCACGCGATATATACACAACCCAATACACACGCA
CACACACGCACACACACACACACACACTTCCTACGCCACGCCCACGCCGC
CGAAACGCCCACGCAAGCCGGCTTGCAGGATTTCGCCCATCTGAAGTTTT
CTCTTGGTATTCCTGTGTGTGCGTGAAAAATTTTAAGTGCGGAGTGCAGC
GTAAATTACACAAAAATATTCAGGCAACTGGACATCTGAGGCAATCTGGC
ATGGCGATGCGACACTTGACAGCTGCCACAATGGGCGTATTGCTGCCAGT
GGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGATGGCATCGGTGCGTG
GACATGGTCGACTAATGGATCCACCGGCCAGGAATGCCATGTGGCGTTTT
GGCTATCCCAATCCGGTGAACTACAATGACAATGAGCTCTTCTGCGGCGG
CTATGCGGTGCAATGGGAGCAAAATAAGGGACGTTGCGGTATCTGCGGCG
ATGCCTACCACGTCAAATCGCCCAGGCCGCACGAGGCTGGTGGTCAATAC
GCCAAGGGCATCATCTCACGCTACTATACCGCCGGTCAGACGATCGATGT
TGAGGTGGAACTGACTGCCAATCATTATGGCCGTTTCGAGATGTTCCTCT
GTCCGAACAACAATCCGCGACAGGAGGCGACACAGCAGTGCTTCGATCGT
TATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCGGTATCTGATACCGCG
TGATGCGAAAAAGAAGGATATATTCCGATACAAGGTACGTTTGCCGCCAT
ATGTCACCTGCACACAGTGCGTACTCCAATGGACCTACTATACGGCCAAT
ATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGTTGGCTGCGGCAAGGC
AGAGACATTCCGCAATTGTGCGGATGTGGCGATCGTTTCGAATACCGGCG
GCGGTATTCCACCGCCTTTCGTGAATAACAAATCGCCATACCTGCTCTAT
TATCGAGATTATCGTGCTCCGGCGGACAACAACATCTTTCCACTTATTGT
GCGTGACCAAAAGTGCATTGGCGCCCCAGCATTCCGTGCCTTGCCGGGCA
TCGACAACTGGTGCGAGATCAATTGCCTGCGCTATCCGCCCAATTGTCCG
GAGGACGCCTGCCAATGTCCTCAGGAGTGCGTGGCCATTGGCGAGTATGC
TGGACAGGATGGTGCCGACACCTACTGCATGGACAAGTGTCTCAACTATG
AATCGGAGTGTCCGCCGGACAGATGCCGCTGCTACTAAACCGGATTGCGA
GCCACAGCTGTGCTGCCCACCCATTGCCCATGCGGAGGATGCGAGATGCG
ATATGCGAGATCTAATGAATTGAATTTAATCGAAAAAAAAAAAAAAAAAA

IP21342.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15785.a 1383 CG15785.a 14..1383 1..1368 6795 99.8 Plus
CG15786-RA 1395 CG15786-RA 14..1068 1..1053 5220 99.8 Plus
CG15785-RA 268 CG15785-RA 33..268 1053..1288 1180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5193992..5194587 307..902 2950 99.7 Plus
chrX 22417052 chrX 5198617..5198835 1171..1382 955 96.8 Plus
chrX 22417052 chrX 5194646..5194799 900..1053 755 99.4 Plus
chrX 22417052 chrX 5198418..5198535 1053..1170 590 100 Plus
chrX 22417052 chrX 5188640..5188778 1..147 580 94.6 Plus
chrX 22417052 chrX 5193847..5193932 222..307 430 100 Plus
chrX 22417052 chrX 5188851..5188927 148..224 370 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:45:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301464..5302059 307..902 2980 100 Plus
X 23542271 X 5306077..5306290 1171..1384 1070 100 Plus
X 23542271 X 5302118..5302271 900..1053 770 100 Plus
X 23542271 X 5296094..5296242 1..147 680 98.7 Plus
X 23542271 X 5305878..5305995 1053..1170 590 100 Plus
X 23542271 X 5301319..5301404 222..307 430 100 Plus
X 23542271 X 5296319..5296395 148..224 385 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5309562..5310157 307..902 2980 100 Plus
X 23527363 X 5314175..5314388 1171..1384 1070 100 Plus
X 23527363 X 5310216..5310369 900..1053 770 100 Plus
X 23527363 X 5304192..5304340 1..147 690 98.6 Plus
X 23527363 X 5313976..5314093 1053..1170 590 100 Plus
X 23527363 X 5309417..5309502 222..307 430 100 Plus
X 23527363 X 5304417..5304493 148..224 385 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:51:01 has no hits.

IP21342.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:52:05 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5198617..5198835 1171..1382 96   Plus
chrX 5188640..5188778 1..147 94 -> Plus
chrX 5188851..5188926 148..223 98 -> Plus
chrX 5193849..5193932 224..307 100 -> Plus
chrX 5193993..5194587 308..902 99 -> Plus
chrX 5194649..5194799 903..1053 99 -> Plus
chrX 5198419..5198535 1054..1170 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:56:40 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 1..806 251..1060 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:50:21 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RC 1..1038 251..1288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:25:21 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RD 1..1038 251..1288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:23 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RD 1..1038 251..1288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:39 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 14..1071 1..1060 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:50:20 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RC 1..1384 1..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:25:21 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RC 29..1412 1..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:23 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RC 29..1412 1..1382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:52:05 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296094..5296242 1..147 98 -> Plus
X 5296319..5296394 148..223 100 -> Plus
X 5301321..5301404 224..307 100 -> Plus
X 5301465..5302059 308..902 100 -> Plus
X 5302121..5302271 903..1053 100 -> Plus
X 5305879..5305995 1054..1170 100 -> Plus
X 5306077..5306288 1171..1382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:52:05 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296094..5296242 1..147 98 -> Plus
X 5296319..5296394 148..223 100 -> Plus
X 5301321..5301404 224..307 100 -> Plus
X 5301465..5302059 308..902 100 -> Plus
X 5302121..5302271 903..1053 100 -> Plus
X 5305879..5305995 1054..1170 100 -> Plus
X 5306077..5306288 1171..1382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:52:05 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296094..5296242 1..147 98 -> Plus
X 5296319..5296394 148..223 100 -> Plus
X 5301321..5301404 224..307 100 -> Plus
X 5301465..5302059 308..902 100 -> Plus
X 5302121..5302271 903..1053 100 -> Plus
X 5305879..5305995 1054..1170 100 -> Plus
X 5306077..5306288 1171..1382 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:25:21 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5190127..5190275 1..147 98 -> Plus
arm_X 5190352..5190427 148..223 100 -> Plus
arm_X 5195354..5195437 224..307 100 -> Plus
arm_X 5195498..5196092 308..902 100 -> Plus
arm_X 5196154..5196304 903..1053 100 -> Plus
arm_X 5199912..5200028 1054..1170 100 -> Plus
arm_X 5200110..5200321 1171..1382 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:41:17 Download gff for IP21342.complete
Subject Subject Range Query Range Percent Splice Strand
X 5310219..5310369 903..1053 100 -> Plus
X 5313977..5314093 1054..1170 100 -> Plus
X 5314175..5314386 1171..1382 100   Plus
X 5309563..5310157 308..902 100 -> Plus
X 5304192..5304340 1..147 98 -> Plus
X 5304417..5304492 148..223 100 -> Plus
X 5309419..5309502 224..307 100 -> Plus

IP21342.hyp Sequence

Translation from 0 to 1287

> IP21342.hyp
AAQTQSTRYIHNPIHTHTHAHTHTHTLPTPRPRRRNAHASRLAGFRPSEV
FSWYSCVCVKNFKCGVQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLP
VGVLGFVVLMQLMASVRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCG
GYAVQWEQNKGRCGICGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTID
VEVELTANHYGRFEMFLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIP
RDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGK
AETFRNCADVAIVSNTGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLI
VRDQKCIGAPAFRALPGIDNWCEINCLRYPPNCPEDACQCPQECVAIGEY
AGQDGADTYCMDKCLNYESECPPDRCRCY*

IP21342.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-PC 345 CG42749-PC 1..345 85..429 1947 100 Plus
CG42749-PD 345 CG42749-PD 1..345 85..429 1947 100 Plus
CG42749-PB 285 CG15786-PA 1..269 85..353 1482 99.6 Plus
CG42598-PB 340 CG42598-PB 1..226 90..314 489 41.6 Plus
CG41284-PC 340 CG41284-PC 1..226 90..314 481 41.1 Plus

IP21342.pep Sequence

Translation from 1 to 1287

> IP21342.pep
LRKRKARDIYTTQYTRTHTHTHTHTLPTPRPRRRNAHASRLAGFRPSEVF
SWYSCVCVKNFKCGVQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLPV
GVLGFVVLMQLMASVRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCGG
YAVQWEQNKGRCGICGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDV
EVELTANHYGRFEMFLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIPR
DAKKKDIFRYKVRLPPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGKA
ETFRNCADVAIVSNTGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLIV
RDQKCIGAPAFRALPGIDNWCEINCLRYPPNCPEDACQCPQECVAIGEYA
GQDGADTYCMDKCLNYESECPPDRCRCY*

IP21342.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21331-PA 234 GF21331-PA 1..223 130..352 1164 93.3 Plus
Dana\GF17331-PA 230 GF17331-PA 17..214 111..314 448 38.7 Plus
Dana\GF17787-PA 233 GF17787-PA 1..209 94..311 421 42 Plus
Dana\GF21333-PA 81 GF21333-PA 1..81 348..428 392 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18746-PA 284 GG18746-PA 5..268 87..352 1365 95.9 Plus
Dere\GG15565-PA 230 GG15565-PA 6..214 105..314 445 39.1 Plus
Dere\GG15554-PA 233 GG15554-PA 1..210 86..311 417 38.2 Plus
Dere\GG18747-PA 70 GG18747-PA 2..70 360..428 366 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24606-PA 281 GH24606-PA 8..268 87..352 1218 84.2 Plus
Dgri\GH19593-PA 370 GH19593-PA 23..221 117..314 483 44.7 Plus
Dgri\GH23904-PA 231 GH23904-PA 17..214 112..315 450 39.7 Plus
Dgri\GH23898-PA 210 GH23898-PA 1..209 94..311 441 42.2 Plus
Dgri\GH24607-PA 88 GH24607-PA 6..88 346..428 375 83.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-PC 345 CG42749-PC 1..345 84..428 1947 100 Plus
CG42749-PD 345 CG42749-PD 1..345 84..428 1947 100 Plus
CG42749-PB 285 CG15786-PA 1..269 84..352 1482 99.6 Plus
CG42598-PB 340 CG42598-PB 1..226 89..313 489 41.6 Plus
CG41284-PC 340 CG41284-PC 1..226 89..313 481 41.1 Plus
CG4367-PD 230 CG4367-PD 18..214 112..314 447 39.4 Plus
CG4367-PC 230 CG4367-PC 18..214 112..314 447 39.4 Plus
CG4362-PA 233 CG4362-PA 1..210 94..311 426 43.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15275-PA 244 GI15275-PA 1..231 122..352 1190 91.8 Plus
Dmoj\GI23986-PA 373 GI23986-PA 25..235 106..315 500 44.5 Plus
Dmoj\GI10048-PA 245 GI10048-PA 6..221 102..319 463 38.7 Plus
Dmoj\GI15276-PA 80 GI15276-PA 3..80 351..428 365 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14286-PA 242 GL14286-PA 1..231 122..352 1197 92.6 Plus
Dper\GL12291-PA 365 GL12291-PA 22..227 111..315 492 44.6 Plus
Dper\GL12511-PA 229 GL12511-PA 6..214 96..314 437 39.3 Plus
Dper\GL12510-PA 235 GL12510-PA 1..210 94..311 424 41.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13958-PA 242 GA13958-PA 1..231 122..352 1197 92.6 Plus
Dpse\GA26262-PB 365 GA26262-PB 22..227 111..315 489 44.1 Plus
Dpse\GA18137-PA 229 GA18137-PA 6..214 96..314 441 39.7 Plus
Dpse\GA18137-PB 212 GA18137-PB 1..197 112..314 434 40.9 Plus
Dpse\GA18133-PA 235 GA18133-PA 1..210 94..311 425 41.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12394-PA 285 GM12394-PA 1..269 84..352 1414 96.7 Plus
Dsec\GM23200-PA 233 GM23200-PA 1..210 86..311 427 41 Plus
Dsec\GM12395-PA 87 GM12395-PA 4..87 345..428 422 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20074-PA 219 GD20074-PA 3..203 108..314 437 38.6 Plus
Dsim\GD24749-PA 87 GD24749-PA 7..87 348..428 388 86.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16848-PA 256 GJ16848-PA 2..243 111..352 1220 90.1 Plus
Dvir\GJ23782-PA 235 GJ23782-PA 1..216 86..317 500 42.1 Plus
Dvir\GJ23780-PA 247 GJ23780-PA 1..218 94..311 450 42.1 Plus
Dvir\GJ16849-PA 83 GJ16849-PA 7..83 352..428 362 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10292-PA 255 GK10292-PA 10..255 106..351 1245 90.7 Plus
Dwil\GK12912-PA 379 GK12912-PA 20..234 105..314 509 44.6 Plus
Dwil\GK12183-PA 253 GK12183-PA 7..224 96..323 461 40.2 Plus
Dwil\GK12182-PA 238 GK12182-PA 1..226 94..321 386 39.4 Plus
Dwil\GK10293-PA 87 GK10293-PA 11..87 352..428 366 85.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16388-PA 283 GE16388-PA 1..267 84..352 1370 95.2 Plus
Dyak\GE25083-PA 230 GE25083-PA 8..214 96..314 438 37.9 Plus
Dyak\GE25081-PA 233 GE25081-PA 1..226 94..329 427 39.1 Plus
Dyak\GE16389-PA 80 GE16389-PA 1..80 349..428 417 95 Plus