Clone IP21401 Report

Search the DGRC for IP21401

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:214
Well:1
Vector:pOT2
Associated Gene/TranscriptCG33258-RB
Protein status:IP21401.pep: gold
Sequenced Size:954

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33258 2008-05-05 Release 5.5 slip selected
CG33258 2008-08-15 Release 5.9 accounting
CG33258 2008-12-18 5.12 accounting

Clone Sequence Records

IP21401.complete Sequence

954 bp assembled on 2008-05-14

GenBank Submission: BT032977

> IP21401.complete
AAATCCTTTGGAAAATGAAGCGAACTCTCCTGATTTTGGCCATAGTTTTT
TGTGGTCTAGCTATTGTGAAGGCATTAGAGTGCCAGGAGTGCCTAGAGGA
TAACGATGTGTATTGTGTAGACCAAACTTCCTATAGGAATTGCATCAAAA
GCAAGCCTTTTGGCAACGTGATAAGCTGCCCCGACGATACGGTTTGCACA
AACTCGAAAAATGTTTGTGTGAAAAGCTCTGATCTAGCAGAATCTGAAGT
CGATGTCTGTGGAACCTCCGGTGGAAACCAATGTGCAACATGCACAAATC
AGAAATATACTTGTGTTAGCAAAAATCAATTTGCGAGATGTTCCGAATCG
GTTGTGGTCGACTCAAACATCTATGACTGCGATACTGATGAGATTTGCAG
TTCGGAAGCACTGGAAAAGTACGACAACATATGTACGCCTTCTTGTGTCC
TCGATTTTCTCGACGTGAGAGCCACTTGCAGCAACAGTGAATACACGACA
ACAACTACCGCAGCACCGACAACTGTCACACCCAGTACAGAGCAGAAAAA
TAGTGCCTGTACTGAAGCTGAAAAAGATCTTCAAATACCTAAGGAAACCT
TGTACTTCTTTACGATCTACAAGGAGGATACTTCCTGCCACACTTATCTC
TACTGCGAAAGAACTGAATCCACCGAATGGGACACTGTTTATTTGTCCTG
CCACCAACCCAAGCCATATTTCGATTCTACGACCAGCCTTTGCGTATCGA
CGAAACCAACGGGATGCTCCTAAATCGACTTATCAAATAATTTGCAAAAC
ATACTTGCATACCACTACTTTTAAATATATATAAAATATTATGGGATTTG
GAAAACATGTTTTGTTCGTTTATAATAACTGCTACTAACATATGTGTGCG
CTGTGTATTGAAAAATAAAGCAAGTTACAAAAAATAGAAAAAAAAAAAAA
AAAA

IP21401.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33258-RB 984 CG33258-RB 48..984 1..937 4685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16072928..16073407 459..937 2230 98.1 Plus
chr3L 24539361 chr3L 16072547..16072857 148..458 1525 99.4 Plus
chr3L 24539361 chr3L 16072347..16072493 1..147 735 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:45:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16083160..16083646 459..945 2420 99.8 Plus
3L 28110227 3L 16082779..16083089 148..458 1555 100 Plus
3L 28110227 3L 16082578..16082724 1..147 735 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16076260..16076746 459..945 2420 99.7 Plus
3L 28103327 3L 16075879..16076189 148..458 1555 100 Plus
3L 28103327 3L 16075678..16075824 1..147 735 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:30:06 has no hits.

IP21401.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:31:09 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16072547..16072857 148..458 99 -> Plus
chr3L 16072347..16072493 1..147 100 -> Plus
chr3L 16072928..16073407 459..937 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:25:13 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RA 1..133 15..147 100 -> Plus
CG33258-RA 188..813 148..773 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:56:21 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 1..759 15..773 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:31 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 1..759 15..773 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:55:29 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RA 1..133 15..147 100 -> Plus
CG33258-RA 188..813 148..773 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:11 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 1..759 15..773 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:20:34 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RA 1..133 15..147 100 -> Plus
CG33258-RA 188..813 148..773 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:56:21 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 28..964 1..937 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:31 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 28..964 1..937 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:55:29 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RA 1..133 15..147 100 -> Plus
CG33258-RA 188..813 148..773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:11 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 28..964 1..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:09 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16082578..16082724 1..147 100 -> Plus
3L 16082779..16083089 148..458 100 -> Plus
3L 16083160..16083638 459..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:09 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16082578..16082724 1..147 100 -> Plus
3L 16082779..16083089 148..458 100 -> Plus
3L 16083160..16083638 459..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:09 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16082578..16082724 1..147 100 -> Plus
3L 16082779..16083089 148..458 100 -> Plus
3L 16083160..16083638 459..937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:31 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16075678..16075824 1..147 100 -> Plus
arm_3L 16075879..16076189 148..458 100 -> Plus
arm_3L 16076260..16076738 459..937 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:08 Download gff for IP21401.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16075678..16075824 1..147 100 -> Plus
3L 16075879..16076189 148..458 100 -> Plus
3L 16076260..16076738 459..937 100   Plus

IP21401.pep Sequence

Translation from 2 to 772

> IP21401.pep
ILWKMKRTLLILAIVFCGLAIVKALECQECLEDNDVYCVDQTSYRNCIKS
KPFGNVISCPDDTVCTNSKNVCVKSSDLAESEVDVCGTSGGNQCATCTNQ
KYTCVSKNQFARCSESVVVDSNIYDCDTDEICSSEALEKYDNICTPSCVL
DFLDVRATCSNSEYTTTTTAAPTTVTPSTEQKNSACTEAEKDLQIPKETL
YFFTIYKEDTSCHTYLYCERTESTEWDTVYLSCHQPKPYFDSTTSLCVST
KPTGCS*

IP21401.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23763-PA 350 GF23763-PA 1..247 5..255 492 45.9 Plus
Dana\GF23762-PA 247 GF23762-PA 1..247 5..255 434 42.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15947-PA 324 GG15947-PA 1..248 5..252 590 49.8 Plus
Dere\GG16654-PA 63 GG16654-PA 1..44 5..48 209 86.4 Plus
Dere\GG14350-PA 209 GG14350-PA 1..209 5..256 193 29.1 Plus
Dere\GG14353-PA 229 GG14353-PA 1..215 5..256 146 29.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16849-PA 382 GH16849-PA 1..241 5..256 357 37.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33258-PC 252 CG33258-PC 1..252 5..256 1371 100 Plus
CG33258-PB 252 CG33258-PB 1..252 5..256 1371 100 Plus
CG13075-PB 339 CG13075-PB 1..252 5..256 675 50.4 Plus
CG32024-PA 209 CG32024-PA 1..209 5..256 251 29.5 Plus
CG13312-PA 342 CG13312-PA 30..245 27..256 195 25.1 Plus
CG42494-PC 283 CG42494-PC 1..283 2..256 185 24.5 Plus
CG42494-PB 283 CG42494-PB 1..283 2..256 185 24.5 Plus
CG42494-PA 283 CG42494-PA 1..283 2..256 185 24.5 Plus
CG13309-PA 229 CG13309-PA 1..215 5..256 172 26.4 Plus
CG13311-PA 153 CG13311-PA 10..139 10..144 159 27.2 Plus
CG13308-PB 233 CG13308-PB 1..222 5..256 151 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13070-PA 333 GI13070-PA 1..246 2..255 355 36 Plus
Dmoj\GI13071-PA 251 GI13071-PA 1..245 5..256 347 32.6 Plus
Dmoj\GI12932-PA 230 GI12932-PA 1..223 5..253 142 25.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25045-PA 429 GL25045-PA 1..213 5..220 470 45.7 Plus
Dper\GL25086-PA 258 GL25086-PA 1..253 5..256 383 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23595-PA 576 GA23595-PA 1..249 5..256 546 44 Plus
Dpse\GA23603-PA 258 GA23603-PA 1..253 5..256 377 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25581-PA 252 GM25581-PA 1..251 5..255 1099 87.6 Plus
Dsec\GM25582-PA 334 GM25582-PA 1..252 5..256 565 49 Plus
Dsec\GM25095-PA 168 GM25095-PA 1..123 5..135 142 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14593-PA 252 GD14593-PA 1..252 5..256 1122 89.7 Plus
Dsim\GD14594-PA 339 GD14594-PA 1..252 5..256 575 49.8 Plus
Dsim\GD14129-PA 168 GD14129-PA 1..123 5..135 142 30.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13820-PA 484 GJ13820-PA 1..249 5..255 358 39.2 Plus
Dvir\GJ13819-PA 251 GJ13819-PA 1..249 5..255 352 37.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24138-PA 245 GK24138-PA 1..245 5..255 462 40.8 Plus
Dwil\GK24149-PA 557 GK24149-PA 1..212 48..255 302 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22290-PA 341 GE22290-PA 1..248 5..252 570 48.6 Plus
Dyak\GE23168-PA 288 GE23168-PA 1..195 5..252 447 44.8 Plus
Dyak\GE20783-PA 209 GE20783-PA 1..209 5..256 178 26.4 Plus

IP21401.hyp Sequence

Translation from 2 to 772

> IP21401.hyp
ILWKMKRTLLILAIVFCGLAIVKALECQECLEDNDVYCVDQTSYRNCIKS
KPFGNVISCPDDTVCTNSKNVCVKSSDLAESEVDVCGTSGGNQCATCTNQ
KYTCVSKNQFARCSESVVVDSNIYDCDTDEICSSEALEKYDNICTPSCVL
DFLDVRATCSNSEYTTTTTAAPTTVTPSTEQKNSACTEAEKDLQIPKETL
YFFTIYKEDTSCHTYLYCERTESTEWDTVYLSCHQPKPYFDSTTSLCVST
KPTGCS*

IP21401.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33258-PC 252 CG33258-PC 1..252 5..256 1371 100 Plus
CG33258-PB 252 CG33258-PB 1..252 5..256 1371 100 Plus
CG13075-PB 339 CG13075-PB 1..252 5..256 675 50.4 Plus
CG32024-PA 209 CG32024-PA 1..209 5..256 251 29.5 Plus
CG13312-PA 342 CG13312-PA 30..245 27..256 195 25.1 Plus