Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP21465.complete Sequence
787 bp assembled on 2008-05-14
GenBank Submission: BT032981
> IP21465.complete
AGCCATGGGACCAAGGCTCTATCCCGCTGCGATCCTCATCCTCCATTGCC
TGCTGTTGCTCTTCCTCCAGGTGGACAGCAGAGGTAACCAGAACCACACC
CAGATGGAAAGACAGCGTCATCTCCGAGCACACAATCTGCACAGGCCTCC
ATACGATGGATACGATTGGCACAAACACTTTAACCGAGATGCCGAACCAA
AGGCGACAGTTGCAAAGGAGAAAGAAGAGAAGACTTTCAAACACAGATCA
GGACATTTAAAAAAGATGAAGCAGACAGCTAGGGATATTTCGAACTGGAG
CAGAGCTCGGAGCGCCTACCAAAAAGAGACGGCAGAGCTGGAGGAATGGG
GTCGAAAGAAGAATATAACTGACAACGAACTGAAGTTATTCTTTGACGGT
GAAATTTCTACCAAAGACAAGTACAGATTATTTGGGGACATTCAAACGGT
TGTCCAGATCCTGAAAGAGGTGATAAAAAAGGGAGCTGTGACCGAAAAAG
AGAAAGCAATGATAACGCCGGAACTGAAACCATTGATCTTAAGATTCGGC
CGCATGTTTGAAAGGGAATTTGCCAAGAACACAAATGCCTTGGAAGCCTT
GCAGATCCTTGTTCATGAGGTTCAAAAATCGAACAGCCGGAACATGAGAC
ATAAGAGTGCTAAAAGGTCTCACTAAGTGGTAATTAAATTGGCTATGCCT
GTGGCGATTTTAGTAACGAAAAGTTTGTAATCTACACACTAAAAGGTCTG
TTAATAAATCGAATAACAATCAAAAAAAAAAAAAAAA
IP21465.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34051-RA | 789 | CG34051-RA | 19..789 | 1..771 | 3855 | 100 | Plus |
CG34051.a | 786 | CG34051.a | 19..786 | 1..771 | 3785 | 99.6 | Plus |
CG10664-RA | 908 | CG10664-RA | 819..908 | 772..683 | 450 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 19958409..19958690 | 771..490 | 1395 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 19958744..19958935 | 490..299 | 945 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 19959194..19959370 | 177..1 | 885 | 100 | Minus |
chr2L | 23010047 | chr2L | 19958999..19959121 | 300..178 | 615 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:45:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19960068..19960350 | 772..490 | 1415 | 100 | Minus |
2L | 23513712 | 2L | 19960404..19960595 | 490..299 | 960 | 100 | Minus |
2L | 23513712 | 2L | 19960854..19961030 | 177..1 | 885 | 100 | Minus |
2L | 23513712 | 2L | 19960659..19960781 | 300..178 | 615 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19960068..19960350 | 772..490 | 1415 | 100 | Minus |
2L | 23513712 | 2L | 19960404..19960595 | 490..299 | 960 | 100 | Minus |
2L | 23513712 | 2L | 19960854..19961030 | 177..1 | 885 | 100 | Minus |
2L | 23513712 | 2L | 19960659..19960781 | 300..178 | 615 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 06:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 4781..4839 | 419..360 | 108 | 66.7 | Minus |
IP21465.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:58:34 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 19958409..19958690 | 490..771 | 99 | <- | Minus |
chr2L | 19958745..19958933 | 301..489 | 99 | <- | Minus |
chr2L | 19958999..19959121 | 178..300 | 100 | <- | Minus |
chr2L | 19959194..19959370 | 1..177 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:25:38 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:56:18 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:58 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:55:40 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:39 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:20:42 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:56:18 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..771 | 1..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:58 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..771 | 1..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:55:40 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..672 | 5..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:39 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 1..771 | 1..771 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:34 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19960069..19960350 | 490..771 | 100 | <- | Minus |
2L | 19960405..19960593 | 301..489 | 100 | <- | Minus |
2L | 19960659..19960781 | 178..300 | 100 | <- | Minus |
2L | 19960854..19961030 | 1..177 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:34 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19960069..19960350 | 490..771 | 100 | <- | Minus |
2L | 19960405..19960593 | 301..489 | 100 | <- | Minus |
2L | 19960659..19960781 | 178..300 | 100 | <- | Minus |
2L | 19960854..19961030 | 1..177 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:34 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19960069..19960350 | 490..771 | 100 | <- | Minus |
2L | 19960405..19960593 | 301..489 | 100 | <- | Minus |
2L | 19960659..19960781 | 178..300 | 100 | <- | Minus |
2L | 19960854..19961030 | 1..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:58 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19960659..19960781 | 178..300 | 100 | <- | Minus |
arm_2L | 19960854..19961030 | 1..177 | 100 | | Minus |
arm_2L | 19960069..19960350 | 490..771 | 100 | <- | Minus |
arm_2L | 19960405..19960593 | 301..489 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:05 Download gff for
IP21465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19960069..19960350 | 490..771 | 100 | <- | Minus |
2L | 19960405..19960593 | 301..489 | 100 | <- | Minus |
2L | 19960659..19960781 | 178..300 | 100 | <- | Minus |
2L | 19960854..19961030 | 1..177 | 100 | | Minus |
IP21465.hyp Sequence
Translation from 0 to 675
> IP21465.hyp
AMGPRLYPAAILILHCLLLLFLQVDSRGNQNHTQMERQRHLRAHNLHRPP
YDGYDWHKHFNRDAEPKATVAKEKEEKTFKHRSGHLKKMKQTARDISNWS
RARSAYQKETAELEEWGRKKNITDNELKLFFDGEISTKDKYRLFGDIQTV
VQILKEVIKKGAVTEKEKAMITPELKPLILRFGRMFEREFAKNTNALEAL
QILVHEVQKSNSRNMRHKSAKRSH*
IP21465.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34051-PA | 223 | CG34051-PA | 1..223 | 2..224 | 1168 | 100 | Plus |
CG34051-PB | 222 | CG34051-PB | 1..222 | 2..224 | 1152 | 99.6 | Plus |
IP21465.pep Sequence
Translation from 1 to 675
> IP21465.pep
AMGPRLYPAAILILHCLLLLFLQVDSRGNQNHTQMERQRHLRAHNLHRPP
YDGYDWHKHFNRDAEPKATVAKEKEEKTFKHRSGHLKKMKQTARDISNWS
RARSAYQKETAELEEWGRKKNITDNELKLFFDGEISTKDKYRLFGDIQTV
VQILKEVIKKGAVTEKEKAMITPELKPLILRFGRMFEREFAKNTNALEAL
QILVHEVQKSNSRNMRHKSAKRSH*
IP21465.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG21603-PA | 226 | GG21603-PA | 1..219 | 2..220 | 691 | 62.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34051-PA | 223 | CG34051-PA | 1..223 | 2..224 | 1168 | 100 | Plus |
CG34051-PB | 222 | CG34051-PB | 1..222 | 2..224 | 1152 | 99.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16978-PA | 224 | GM16978-PA | 1..221 | 2..222 | 968 | 86 | Plus |
Dsec\GM18814-PA | 101 | GM18814-PA | 43..100 | 1..58 | 221 | 86.2 | Plus |
Dsec\GM11934-PA | 101 | GM11934-PA | 43..100 | 1..58 | 221 | 86.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD21727-PA | 224 | GD21727-PA | 1..223 | 2..224 | 986 | 86.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE12620-PA | 222 | GE12620-PA | 1..221 | 2..224 | 736 | 61 | Plus |