Clone IP21604 Report

Search the DGRC for IP21604

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:216
Well:4
Vector:pOT2
Associated Gene/TranscriptCG13484-RA
Protein status:IP21604.pep: gold
Sequenced Size:671

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13484 2008-05-05 Release 5.5 slip selected
CG13484 2008-08-15 Release 5.9 accounting
CG13484 2008-12-18 5.12 accounting

Clone Sequence Records

IP21604.complete Sequence

671 bp assembled on 2008-05-14

GenBank Submission: BT032816

> IP21604.complete
AAAATAAAAAAACATTTGTTTTACATTTCGGATCCAAGGAAATAAGCCAT
TATTGGCTTAAATAAGCTTTAACGACTGCAATCATGAGCACCCCTCGCAA
GAACTATAACAACCTGCCGCCCTACTGCCCACAAGGCGGCCAGTACCCAT
CGCAGTCCGCGGATTACAGAGCGCAGCAATTCGGTGGCCAGCAGAAGCCA
CAAAATCCAAACGTTGGCTTCTACGAGGACAAACAGGGCCAGCAAAATGT
TCCTCATTTCTACCAGAACAAATCCCCACAGGAGCCGCAGCGCCATCGGC
CCTACGGTCAGGGCAGGAATTTCGGACGCGGCGGCAGCTTCAATCGCAGG
AACCAACAGAACTGGGATCATCCGAGGAGCCACCAGAACAGGGAACAAAA
CCAGAGCGGCAGCTCCTTCGGCCAGTACTTTCATCCCTCCATGCTGGAGG
ATCCTTGGCGGGAGCTAATGGAACGGCACGAGGCCATCCACGGACCCAGT
ACTAGCCGAACTTCACCGAAAGAGGTGGCGGCTTCCTAAAATGTAGAATA
CAACACTAAGAGCTAGTTAAGCCCTGTAGGATAATTTCCCCAAAGCAAAG
AAAGAATTTTAATTTTAGCTTTCCGATATTAAACAAAAGAATGTGTAAAC
ATAAAAAAAAAAAAAAAAAAA

IP21604.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13484-RA 646 CG13484-RA 1..646 1..646 3230 100 Plus
CG6833.a 1261 CG6833.a 1170..1261 657..566 460 100 Minus
CG6833-RA 1230 CG6833-RA 1184..1230 657..611 235 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14042533..14043184 652..1 3170 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:46:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14052423..14053079 657..1 3285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14045523..14046179 657..1 3285 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:55:29 has no hits.

IP21604.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:56:11 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14042533..14043184 1..652 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:26:26 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:57:45 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:52:45 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:56:43 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:17:43 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:21:50 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:57:44 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..652 1..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:52:45 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..652 1..652 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:56:43 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..456 84..539 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:17:43 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 1..652 1..652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:56:11 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14052428..14053079 1..652 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:56:11 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14052428..14053079 1..652 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:56:11 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14052428..14053079 1..652 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:52:45 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14045528..14046179 1..652 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:34:00 Download gff for IP21604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14045528..14046179 1..652 100   Minus

IP21604.pep Sequence

Translation from 83 to 538

> IP21604.pep
MSTPRKNYNNLPPYCPQGGQYPSQSADYRAQQFGGQQKPQNPNVGFYEDK
QGQQNVPHFYQNKSPQEPQRHRPYGQGRNFGRGGSFNRRNQQNWDHPRSH
QNREQNQSGSSFGQYFHPSMLEDPWRELMERHEAIHGPSTSRTSPKEVAA
S*

IP21604.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25208-PA 157 GF25208-PA 1..157 1..151 429 66.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13737-PA 152 GG13737-PA 1..152 1..151 680 88.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16349-PA 138 GH16349-PA 40..138 40..151 150 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13484-PA 151 CG13484-PA 1..151 1..151 852 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11541-PA 165 GI11541-PA 1..148 1..141 275 45.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24836-PA 146 GL24836-PA 1..140 1..141 299 52.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12318-PA 146 GA12318-PA 1..140 1..141 299 52.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24559-PA 152 GM24559-PA 1..152 1..151 698 89.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12632-PA 152 GD12632-PA 1..152 1..151 710 90.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11561-PA 161 GJ11561-PA 1..159 1..148 270 44.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17148-PA 149 GK17148-PA 1..138 1..136 233 44 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20031-PA 152 GE20031-PA 1..152 1..151 710 90.8 Plus

IP21604.hyp Sequence

Translation from 83 to 538

> IP21604.hyp
MSTPRKNYNNLPPYCPQGGQYPSQSADYRAQQFGGQQKPQNPNVGFYEDK
QGQQNVPHFYQNKSPQEPQRHRPYGQGRNFGRGGSFNRRNQQNWDHPRSH
QNREQNQSGSSFGQYFHPSMLEDPWRELMERHEAIHGPSTSRTSPKEVAA
S*

IP21604.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13484-PA 151 CG13484-PA 1..151 1..151 852 100 Plus