Clone IP21873 Report

Search the DGRC for IP21873

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:218
Well:73
Vector:pOT2
Associated Gene/TranscriptEip63F-1-RA
Protein status:IP21873.pep: gold
Sequenced Size:1152

Clone Sequence Records

IP21873.complete Sequence

1152 bp assembled on 2009-07-23

GenBank Submission: BT088940.1

> IP21873.complete
GCGAGACGATCGTTGAAAAAGTCGCGCGCGCTGCTAAAATAAATTCAAGC
GCTATATTATTAGGCAAACAAAAAGGAACACACATCATTATAATCCCCTT
AAAAGTTAAGATATAAATACGCAGGCGACGAGGGGAAATACGAAATACAA
AGTAAACACATTTTATTGCTGGATAATTTTACTGTGCCCAGTGACAAGAG
TGCTAACACATTTAATACACATTCAAGTGCTGGCAAATAGAGCCGAAACT
GGGCCAAAGTTGATTTGAAACCAAATATTACTCATACGCCACCGGCACCG
CATTCATTCCCCCACCTAAGCTATCACTTCTTGAATGAGCCCAATGAGCG
GACTGCGCCAACAGCTAAAGATGCTGGGTACAGCATTGCTGGGCAAACGG
GCCACCAAGTCTGTCAAAAAGAAACCATTTACGGAGGTGGAAATCAAAGA
TCTACGCACAGCATTCGATCTACTAGACAGAAATCGCGACGGTCGCGTCA
CCGCCAACGAGCTGCAGTTTATGCTAAAGAACCTGGGCATAAACGTGAGT
GACGAACTCATACACGATCTCATACGTGAGGCGAGCCACTCAGGCAATGG
CTTAATCAACGAGGCCGAGTTCCTGCAATGGGTGGGCAGGATCCAGGCGC
TGCGGGACGAGCAGCATTCACATGAGGACAGCAAGGACAGCAAGCCGGTG
GACGAGGCCGATGATGTCACCGAGGACTTGATAGCCGCATTTAGAGTATT
CGATCGGGATGGCAATGGGTTCATAACGCGCGACGAGCTGCAGACCGCCA
TGGAGATGATTGGGGAGCCCTTGAACGAGCAGCAGCTGGAGCAGCTGCTG
GTCATCGCGGACTTGGACCAGGACGGGCGCATCAATTACGAGGAATTCAC
GAGACTTTTGCTCTAAGCAGATTAACGCCCATCAAGGAGGCATGGTCAAC
CCCAAAACCCTGGAAATTTCGAGCGGATTGCAGCCCGAGTTGCCCCTTCA
GCATAATTGTTAAGCTATTAAGAATATACTCAGACATGCAGAAAATAATA
ATGCAACAAAATGTGCAGAGCGTAATTGTTTGAAATTTTATACAACAATA
AATTTATTTATACAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

IP21873.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Eip63F-1-RA 2870 Eip63F-1-RA 29..1156 1..1128 5595 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3932654..3933023 370..1 1835 99.7 Minus
chr3L 24539361 chr3L 3911134..3911359 1118..893 1100 99.1 Minus
chr3L 24539361 chr3L 3913293..3913446 744..591 770 100 Minus
chr3L 24539361 chr3L 3913067..3913217 893..743 740 99.3 Minus
chr3L 24539361 chr3L 3919325..3919471 594..448 735 100 Minus
chr3L 24539361 chr3L 3930365..3930405 409..369 205 100 Minus
chr3L 24539361 chr3L 3930220..3930261 449..408 195 97.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:46:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3933247..3933616 370..1 1850 100 Minus
3L 28110227 3L 3911680..3911915 1128..893 1135 98.7 Minus
3L 28110227 3L 3913852..3914005 744..591 770 100 Minus
3L 28110227 3L 3913626..3913776 893..743 755 100 Minus
3L 28110227 3L 3919883..3920029 594..448 735 100 Minus
3L 28110227 3L 3930813..3930854 449..408 210 100 Minus
3L 28110227 3L 3930958..3930998 409..369 205 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3933247..3933616 370..1 1850 100 Minus
3L 28103327 3L 3911680..3911915 1128..893 1135 98.7 Minus
3L 28103327 3L 3913852..3914005 744..591 770 100 Minus
3L 28103327 3L 3913626..3913776 893..743 755 100 Minus
3L 28103327 3L 3919883..3920029 594..448 735 100 Minus
3L 28103327 3L 3930813..3930854 449..408 210 100 Minus
3L 28103327 3L 3930958..3930998 409..369 205 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:51:58 has no hits.

IP21873.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:52 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3911134..3911358 894..1118 99 <- Minus
chr3L 3913067..3913215 745..893 99 <- Minus
chr3L 3913293..3913443 594..744 100 <- Minus
chr3L 3919326..3919469 450..593 100 <- Minus
chr3L 3930220..3930259 410..449 97 <- Minus
chr3L 3930365..3930403 371..409 100 <- Minus
chr3L 3932654..3933023 1..370 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:10:05 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 1..582 335..916 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:59:54 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 1..582 335..916 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:38:19 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 1..582 335..916 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:04 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 1..582 335..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:10:05 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 22..1139 1..1118 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:59:54 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 22..1139 1..1118 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:38:19 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 22..1139 1..1118 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:04 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Eip63F-1-RA 22..1139 1..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:52 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3919884..3920027 450..593 100 <- Minus
3L 3930813..3930852 410..449 100 <- Minus
3L 3930958..3930996 371..409 100 <- Minus
3L 3911690..3911914 894..1118 100 <- Minus
3L 3913626..3913774 745..893 100 <- Minus
3L 3913852..3914002 594..744 100 <- Minus
3L 3933247..3933616 1..370 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:52 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3919884..3920027 450..593 100 <- Minus
3L 3930813..3930852 410..449 100 <- Minus
3L 3930958..3930996 371..409 100 <- Minus
3L 3911690..3911914 894..1118 100 <- Minus
3L 3913626..3913774 745..893 100 <- Minus
3L 3913852..3914002 594..744 100 <- Minus
3L 3933247..3933616 1..370 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:52 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3919884..3920027 450..593 100 <- Minus
3L 3930813..3930852 410..449 100 <- Minus
3L 3930958..3930996 371..409 100 <- Minus
3L 3911690..3911914 894..1118 100 <- Minus
3L 3913626..3913774 745..893 100 <- Minus
3L 3913852..3914002 594..744 100 <- Minus
3L 3933247..3933616 1..370 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:38:19 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3911690..3911914 894..1118 100 <- Minus
arm_3L 3913626..3913774 745..893 100 <- Minus
arm_3L 3913852..3914002 594..744 100 <- Minus
arm_3L 3919884..3920027 450..593 100 <- Minus
arm_3L 3930813..3930852 410..449 100 <- Minus
arm_3L 3930958..3930996 371..409 100 <- Minus
arm_3L 3933247..3933616 1..370 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:51:37 Download gff for IP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3911690..3911914 894..1118 100 <- Minus
3L 3913626..3913774 745..893 100 <- Minus
3L 3913852..3914002 594..744 100 <- Minus
3L 3919884..3920027 450..593 100 <- Minus
3L 3930813..3930852 410..449 100 <- Minus
3L 3930958..3930996 371..409 100 <- Minus
3L 3933247..3933616 1..370 100   Minus

IP21873.pep Sequence

Translation from 334 to 915

> IP21873.pep
MSPMSGLRQQLKMLGTALLGKRATKSVKKKPFTEVEIKDLRTAFDLLDRN
RDGRVTANELQFMLKNLGINVSDELIHDLIREASHSGNGLINEAEFLQWV
GRIQALRDEQHSHEDSKDSKPVDEADDVTEDLIAAFRVFDRDGNGFITRD
ELQTAMEMIGEPLNEQQLEQLLVIADLDQDGRINYEEFTRLLL*

IP21873.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10252-PA 194 GF10252-PA 1..194 1..193 944 94.3 Plus
Dana\GF12835-PA 149 GF12835-PA 6..146 33..192 262 36.2 Plus
Dana\GF13647-PA 148 GF13647-PA 12..145 40..192 204 30.7 Plus
Dana\GF16772-PA 148 GF16772-PA 5..145 33..192 200 29.4 Plus
Dana\GF22746-PA 184 GF22746-PA 30..178 25..192 185 30.4 Plus
Dana\GF16772-PA 148 GF16772-PA 83..147 38..102 152 43.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14238-PA 193 GG14238-PA 1..193 1..193 1001 100 Plus
Dere\GG20265-PA 149 GG20265-PA 6..146 33..192 262 36.2 Plus
Dere\GG11425-PA 148 GG11425-PA 5..145 33..192 209 30.6 Plus
Dere\GG23316-PA 148 GG23316-PA 15..145 43..192 209 31.3 Plus
Dere\GG21382-PA 182 GG21382-PA 18..176 20..192 178 30.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15712-PA 194 GH15712-PA 1..194 1..193 910 91.2 Plus
Dgri\GH23405-PA 151 GH23405-PA 8..148 33..192 244 35.6 Plus
Dgri\GH16787-PA 149 GH16787-PA 4..144 33..192 202 33.1 Plus
Dgri\GH21304-PA 151 GH21304-PA 7..146 31..189 195 30 Plus
Dgri\GH10976-PA 190 GH10976-PA 22..184 16..192 195 30.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Eip63F-1-PA 193 CG15855-PA 1..193 1..193 974 100 Plus
Eip63F-1-PC 181 CG15855-PC 1..181 13..193 915 100 Plus
Eip63F-1-PD 166 CG15855-PD 9..166 36..193 796 98.1 Plus
Eip63F-1-PB 161 CG15855-PB 6..161 38..193 785 99.4 Plus
Cam-PD 149 CG8472-PD 6..146 33..192 272 35.6 Plus
Cam-PC 149 CG8472-PC 6..146 33..192 272 35.6 Plus
Cam-PE 149 CG8472-PE 6..146 33..192 272 35.6 Plus
Cam-PB 149 CG8472-PB 6..146 33..192 272 35.6 Plus
Cam-PA 149 CG8472-PA 6..146 33..192 272 35.6 Plus
CG31960-PA 148 CG31960-PA 6..145 35..192 231 33.3 Plus
Acam-PB 148 CG17769-PB 5..145 33..192 231 31.9 Plus
Acam-PA 148 CG17769-PA 5..145 33..192 231 31.9 Plus
azot-PA 148 CG11165-PA 16..145 44..192 225 32.2 Plus
CG11638-PA 387 CG11638-PA 202..355 28..192 223 29.1 Plus
CG17493-PD 182 CG17493-PD 19..176 21..192 192 30.5 Plus
CG17493-PC 182 CG17493-PC 19..176 21..192 192 30.5 Plus
CG17493-PB 182 CG17493-PB 19..176 21..192 192 30.5 Plus
CG17770-PA 164 CG17770-PA 13..161 25..192 181 27.4 Plus
CG30378-PA 148 CG30378-PA 6..142 33..188 179 28.8 Plus
Mlc-c-PA 147 CG3201-PA 4..145 32..193 169 27.8 Plus
Mlc-c-PB 153 CG3201-PB 9..151 29..193 164 28.5 Plus
TpnC41C-PB 154 CG2981-PB 13..149 40..192 162 25.5 Plus
TpnC41C-PA 154 CG2981-PA 13..149 40..192 162 25.5 Plus
CG5024-PB 165 CG5024-PB 14..163 25..193 160 26 Plus
CG5024-PA 165 CG5024-PA 14..163 25..193 160 26 Plus
TpnC73F-PC 155 CG7930-PC 9..152 33..192 157 23.8 Plus
TpnC73F-PA 155 CG7930-PA 9..152 33..192 157 23.8 Plus
sqh-PE 174 CG3595-PE 1..164 4..192 157 27.4 Plus
sqh-PD 174 CG3595-PD 1..164 4..192 157 27.4 Plus
sqh-PC 174 CG3595-PC 1..164 4..192 157 27.4 Plus
sqh-PB 174 CG3595-PB 1..164 4..192 157 27.4 Plus
sqh-PA 174 CG3595-PA 1..164 4..192 157 27.4 Plus
CG13526-PA 154 CG13526-PA 10..146 33..188 156 23.7 Plus
CG31802-PA 186 CG31802-PA 16..180 13..192 154 26.6 Plus
CG13898-PA 151 CG13898-PA 12..145 36..188 152 25.5 Plus
TpnC47D-PB 155 CG9073-PB 9..152 33..192 151 24.4 Plus
TpnC47D-PA 155 CG9073-PA 9..152 33..192 151 24.4 Plus
TpnC25D-PB 143 CG6514-PB 4..140 40..192 147 23.5 Plus
TpnC25D-PC 149 CG6514-PC 10..146 40..192 147 23.5 Plus
TpnC25D-PA 149 CG6514-PA 10..146 40..192 147 23.5 Plus
Acam-PB 148 CG17769-PB 83..147 38..102 141 41.5 Plus
Acam-PA 148 CG17769-PA 83..147 38..102 141 41.5 Plus
TpnC4-PB 153 CG12408-PB 6..151 32..192 141 20.5 Plus
TpnC4-PA 153 CG12408-PA 6..151 32..192 141 20.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12767-PA 193 GI12767-PA 1..193 4..193 896 91.2 Plus
Dmoj\GI21841-PA 140 GI21841-PA 28..140 84..193 502 88.5 Plus
Dmoj\GI20594-PA 149 GI20594-PA 6..146 33..192 262 36.2 Plus
Dmoj\GI10339-PA 149 GI10339-PA 6..146 33..192 228 33.8 Plus
Dmoj\GI10340-PA 150 GI10340-PA 7..147 33..192 191 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16202-PA 161 GL16202-PA 1..161 1..193 624 69 Plus
Dper\GL10814-PA 149 GL10814-PA 6..146 33..192 262 36.2 Plus
Dper\GL21535-PA 148 GL21535-PA 5..145 33..192 231 33.8 Plus
Dper\GL11701-PA 148 GL11701-PA 4..145 32..192 224 32.9 Plus
Dper\GL21536-PA 148 GL21536-PA 5..145 33..192 224 33.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28421-PA 191 GA28421-PA 1..191 4..193 913 93.2 Plus
Dpse\GA24499-PA 149 GA24499-PA 6..146 33..192 262 36.2 Plus
Dpse\GA14657-PA 148 GA14657-PA 5..145 33..192 231 33.8 Plus
Dpse\GA24239-PA 149 GA24239-PA 10..143 36..188 229 33.1 Plus
Dpse\GA26322-PA 148 GA26322-PA 5..145 33..192 224 33.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14030-PA 193 GM14030-PA 1..193 1..193 998 99.5 Plus
Dsec\GM21351-PA 149 GM21351-PA 6..146 33..192 262 36.2 Plus
Dsec\GM10265-PA 148 GM10265-PA 5..145 33..192 217 31.9 Plus
Dsec\GM20994-PA 148 GM20994-PA 15..145 43..192 210 32 Plus
Dsec\GM19287-PA 182 GM19287-PA 14..176 16..192 181 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13311-PA 190 GD13311-PA 1..190 4..193 983 100 Plus
Dsim\GD10849-PA 149 GD10849-PA 6..146 33..192 262 36.2 Plus
Dsim\GD10523-PA 148 GD10523-PA 15..145 43..192 218 34 Plus
Dsim\GD21235-PA 148 GD21235-PA 5..145 33..192 217 31.9 Plus
Dsim\GD10524-PA 117 GD10524-PA 1..114 60..192 182 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15116-PA 151 GJ15116-PA 16..145 44..192 220 34.9 Plus
Dvir\GJ10193-PA 151 GJ10193-PA 11..148 36..192 215 31.8 Plus
Dvir\GJ20779-PA 113 GJ20779-PA 1..110 64..192 203 35.7 Plus
Dvir\GJ15110-PA 190 GJ15110-PA 27..184 21..192 193 31.6 Plus
Dvir\GJ15117-PA 152 GJ15117-PA 2..147 25..189 176 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16697-PA 202 GK16697-PA 1..202 1..193 903 89.6 Plus
Dwil\GK22183-PA 149 GK22183-PA 6..146 33..192 262 36.2 Plus
Dwil\GK18988-PA 148 GK18988-PA 5..145 33..192 221 31.9 Plus
Dwil\GK21454-PA 151 GK21454-PA 3..148 25..192 216 32.7 Plus
Dwil\GK15343-PA 197 GK15343-PA 33..191 20..192 186 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20666-PA 193 GE20666-PA 1..193 1..193 1001 100 Plus
Dyak\Cam-PA 149 GE12425-PA 6..146 33..192 262 36.2 Plus
Dyak\GE23620-PA 148 GE23620-PA 5..145 33..192 215 31.2 Plus
Dyak\GE19161-PA 148 GE19161-PA 15..145 43..192 210 32 Plus
Dyak\GE18259-PA 148 GE18259-PA 12..145 40..192 194 30.1 Plus

IP21873.hyp Sequence

Translation from 334 to 915

> IP21873.hyp
MSPMSGLRQQLKMLGTALLGKRATKSVKKKPFTEVEIKDLRTAFDLLDRN
RDGRVTANELQFMLKNLGINVSDELIHDLIREASHSGNGLINEAEFLQWV
GRIQALRDEQHSHEDSKDSKPVDEADDVTEDLIAAFRVFDRDGNGFITRD
ELQTAMEMIGEPLNEQQLEQLLVIADLDQDGRINYEEFTRLLL*

IP21873.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Eip63F-1-PA 193 CG15855-PA 1..193 1..193 974 100 Plus
Eip63F-1-PC 181 CG15855-PC 1..181 13..193 915 100 Plus
Eip63F-1-PD 166 CG15855-PD 9..166 36..193 796 98.1 Plus
Eip63F-1-PB 161 CG15855-PB 6..161 38..193 785 99.4 Plus
Cam-PD 149 CG8472-PD 6..146 33..192 272 35.6 Plus