Clone IP21884 Report

Search the DGRC for IP21884

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:218
Well:84
Vector:pOT2
Associated Gene/TranscriptSurf1-RA
Protein status:IP21884.pep: gold
Sequenced Size:998

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Surf1 2008-05-05 Release 5.5 slip selected

Clone Sequence Records

IP21884.complete Sequence

998 bp assembled on 2009-04-28

GenBank Submission: BT082083.1

> IP21884.complete
AAAGAAAGTATGATACGTTTGGGGAACCAAATGTGCCGGCAAGTGGCCTT
TAATATACAGACTGTATTCCGAAACCCGGGCACCGCGAACAATCCGAGAT
TAATCACCAGAAAGATGACACAACAGCGACCGCCGGTGAATTGGACAACC
AGTATTCCCAATCAGGCGGCGAAGGACAAGGAGAAGATAGCTCCTTTGGG
ATGGTTCCTCCTGCTCATACCGGCCACCACTTTTGGCTTGGGCTGCTGGC
AAGTGAAGCGCAAGATTTGGAAGGAGCAGTTGATCAAGGATCTCAACAAG
CAGCTGAGCACGGCGCCTGTGGCTCTACCAGACGATCTCACTGACTTGGC
CCAAATGGAGTACCGCCTGGTCAAGATCCGTGGACGTTTCCTTCACGACA
AGGAGATGCGCCTGGGTCCGAGATCGCTGATACGGCCCGATGGCGTGGAA
ACCCAAGGAGGACTCTTCTCGCAGCGCGACTCGGGCAATGGCTATCTAAT
AGTAACCCCTTTTCAGCTGGCAGATAGAGACGACATAGTGCTCGTCAATC
GGGGCTGGGTGTCCCGCAAGCAAGTGGAGCCGGAAACCAGGCCGCTGGGC
CAACAACAGGCGGAAGTGGAGCTCACCGCCGTCGTGCGCAAAGGAGAGGC
GCGTCCGCAGTTCACACCCGACCACAAGGGCAATGTCTATCTCTATCGCG
ACTTGGCGCGCATGTGCGCCGCCACAGGAGCAGCTCCTGTGTTCCTGGAC
GCCGTCTACGATCCGCAAACGGCTGCACATGCTCCAATCGGTGGACAGAC
ACGCGTTACCCTGCGCAACGATCATCTGTCGTACCTGGTGACCTGGTTCA
GTCTATCGGCGGCCACCTCCTTTTTGTGGTACCGCCAAATAGTCAAGAGG
ATACCCTTCTGAAAAAGGGAACCCAAATCAAACGCACTGTTGTTATTTTT
ATTATAAAAATTTACATGCTCTCGTGTAAAAAAAAAAAAAAAAAAAAA

IP21884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Surf1-RA 1094 Surf1-RA 118..1094 1..977 4885 100 Plus
sgl-RA 2377 sgl-RA 2335..2377 980..938 215 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6951433..6951879 531..977 2220 99.8 Plus
chr3L 24539361 chr3L 6950714..6950929 1..213 1000 98.6 Plus
chr3L 24539361 chr3L 6951182..6951376 336..530 960 99.5 Plus
chr3L 24539361 chr3L 6950997..6951119 213..335 600 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:46:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6959140..6959589 531..980 2250 100 Plus
3L 28110227 3L 6958424..6958636 1..213 1065 100 Plus
3L 28110227 3L 6958889..6959083 336..530 975 100 Plus
3L 28110227 3L 6958704..6958826 213..335 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6952240..6952689 531..980 2250 100 Plus
3L 28103327 3L 6951524..6951736 1..213 1065 100 Plus
3L 28103327 3L 6951989..6952183 336..530 975 100 Plus
3L 28103327 3L 6951804..6951926 213..335 615 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:12:49 has no hits.

IP21884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:13:42 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6950714..6950929 1..213 98 -> Plus
chr3L 6950998..6951119 214..335 99 -> Plus
chr3L 6951182..6951376 336..530 99 -> Plus
chr3L 6951433..6951879 531..977 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:16 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 1..903 10..912 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:46:43 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 1..903 10..912 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:16:56 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 1..903 10..912 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:40 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 1..903 10..912 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-28 19:11:35 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 79..1016 1..938 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:46:42 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 79..1055 1..977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:16:56 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 79..1055 1..977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:40 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 79..1055 1..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:42 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6958424..6958636 1..213 100 -> Plus
3L 6958705..6958826 214..335 100 -> Plus
3L 6958889..6959083 336..530 100 -> Plus
3L 6959140..6959586 531..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:42 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6958424..6958636 1..213 100 -> Plus
3L 6958705..6958826 214..335 100 -> Plus
3L 6958889..6959083 336..530 100 -> Plus
3L 6959140..6959586 531..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:42 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6958424..6958636 1..213 100 -> Plus
3L 6958705..6958826 214..335 100 -> Plus
3L 6958889..6959083 336..530 100 -> Plus
3L 6959140..6959586 531..977 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:16:56 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6951524..6951736 1..213 100 -> Plus
arm_3L 6951805..6951926 214..335 100 -> Plus
arm_3L 6951989..6952183 336..530 100 -> Plus
arm_3L 6952240..6952686 531..977 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:32 Download gff for IP21884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6952240..6952686 531..977 100   Plus
3L 6951524..6951736 1..213 100 -> Plus
3L 6951805..6951926 214..335 100 -> Plus
3L 6951989..6952183 336..530 100 -> Plus

IP21884.hyp Sequence

Translation from 0 to 911

> IP21884.hyp
KESMIRLGNQMCRQVAFNIQTVFRNPGTANNPRLITRKMTQQRPPVNWTT
SIPNQAAKDKEKIAPLGWFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNK
QLSTAPVALPDDLTDLAQMEYRLVKIRGRFLHDKEMRLGPRSLIRPDGVE
TQGGLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLG
QQQAEVELTAVVRKGEARPQFTPDHKGNVYLYRDLARMCAATGAAPVFLD
AVYDPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSLSAATSFLWYRQIVKR
IPF*

IP21884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Surf1-PA 300 CG9943-PA 1..300 4..303 1578 100 Plus

IP21884.pep Sequence

Translation from 0 to 911

> IP21884.pep
KESMIRLGNQMCRQVAFNIQTVFRNPGTANNPRLITRKMTQQRPPVNWTT
SIPNQAAKDKEKIAPLGWFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNK
QLSTAPVALPDDLTDLAQMEYRLVKIRGRFLHDKEMRLGPRSLIRPDGVE
TQGGLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLG
QQQAEVELTAVVRKGEARPQFTPDHKGNVYLYRDLARMCAATGAAPVFLD
AVYDPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSLSAATSFLWYRQIVKR
IPF*

IP21884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23555-PA 301 GF23555-PA 1..301 4..303 1273 78.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14394-PA 300 GG14394-PA 1..300 4..303 1488 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15370-PA 300 GH15370-PA 1..300 4..303 1203 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Surf1-PA 300 CG9943-PA 1..300 4..303 1578 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12973-PA 264 GI12973-PA 1..264 39..303 1131 79.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15049-PA 215 GL15049-PA 1..215 39..303 899 66.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22142-PA 265 GA22142-PA 1..265 39..303 1164 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14809-PA 300 GM14809-PA 1..300 4..303 1519 94 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13981-PA 381 GD13981-PA 1..262 39..300 1330 95.4 Plus
Dsim\GD13981-PA 381 GD13981-PA 256..381 178..303 670 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13118-PA 265 GJ13118-PA 1..265 39..303 1150 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16990-PA 267 GK16990-PA 12..267 47..303 1108 78.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21584-PA 300 GE21584-PA 1..300 4..303 1511 93.7 Plus