Clone KHBD00542 Report

Search the DGRC for KHBD00542

Clone and Library Details

Library:KHBD
Tissue Source:
Created by:
Date Registered:2011-09-07
Comments:
Original Plate Number:10
Well:14
Vector:pDONR221
Associated Gene/TranscriptScr-RB
Protein status:KHBD00542.pep: Inserted from web
Sequenced Size:Not sequenced

Clone Sequence Records

KHBD00542.complete Sequence

1251 bp (1251 high quality bases) assembled on 2011-07-12

> KHBD00542.complete
ATGGATCCCGACTGTTTTGCGATGTCCTCGTACCAGTTCGTCAACTCGCT
GGCCTCCTGTTATCCGCAGCAGATGAATCCGCAGCAGAATCACCCGGGAG
CGGGAAATTCGAGTGCAGGCGGCAGCGGTGGAGGGGCGGGCGGTAGCGGG
GGCGTGGTGCCCAGCGGCGGAACGAACGGCGGTCAGGGCAGTGCGGGGGC
GGCCACTCCGGGGGCGAACGACTACTTCCCAGCCGCGGCGGCCTATACGC
CTAACCTGTATCCAAACACACCGCAGGCCCACTACGCCAATCAGGCGGCC
TACGGCGGACAGGGAAATCCGGATATGGTGGACTACACGCAGCTACAGCC
GCAGCGACTGCTCCTGCAGCAGCAGCAGCAACAGCAACAGCAGCAACATG
CCCATGCAGCGGCAGCAGTTGCTGCCCAGCAGCAGCAGCAACTCGCCCAG
CAGCAACACCCGCAACAGCAGCAACAGCAGCAGCAGGCGAACATCAGTTG
CAAGTACGCCAACGATCCAGTGACGCCGGGCGGAAGTGGGGGCGGGGGTG
TTTCCGGTAGCAACAACAATAACAATAGCGCCAACAGCAACAACAACAAC
AGCCAGTCGCTAGCCAGTCCACAGGATCTGTCCACCAGGGACATATCGCC
CAAACTGTCGCCCAGCTCAGTGGTAGAGAGTGTGGCCCGATCGCTGAACA
AGGGCGTCCTGGGCGGAAGCTTGGCGGCCGCCGCTGCCGCCGCCGGCTTG
AACAACAACCACAGCGGATCGGGAGTGTCCGGAGGACCTGGAAACGTCAA
TGTTCCCATGCACAGTCCGGGGGGCGGGGATTCGGACTCCGAGAGCGATA
GCGGCAATGAGGCGGGCAGTAGCCAGAACAGCGGCAATGGAAAGAAGAAC
CCGCCGCAGATATATCCGTGGATGAAGCGAGTACATCTCGGGACGAGTAC
TGTGAATGCCAATGGCGAGACGAAACGACAACGGACCTCATACACCCGCT
ACCAGACGCTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACC
CGCCGCCGCAGAATCGAGATCGCGCATGCCCTGTGTCTCACGGAGCGGCA
GATCAAGATCTGGTTCCAGAACCGGCGCATGAAGTGGAAGAAGGAGCACA
AGATGGCCTCGATGAACATCGTACCCTACCACATGGGTCCATATGGCCAC
CCGTACCACCAGTTCGATATCCATCCGTCGCAGTTCGCGCACCTAAGCGC
A

KHBD00542.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2667040..2667987 948..1 4680 99.6 Minus
chr3R 27901430 chr3R 2651185..2651488 1250..947 1520 100 Minus
chr3R 27901430 chr3R 2724218..2724380 1153..991 530 88.3 Minus
chr3R 27901430 chr3R 12483446..12483603 1146..989 490 87.3 Minus
chr3R 27901430 chr3R 2626806..2626985 973..1152 450 83.3 Plus
chr3R 27901430 chr3R 2691149..2691303 991..1145 400 83.9 Plus
chr3R 27901430 chr3R 12634665..12634820 1146..991 390 83.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6841233..6842180 948..1 4740 100 Minus
3R 32079331 3R 6825385..6825689 1251..947 1525 100 Minus
3R 32079331 3R 6898353..6898517 1153..989 540 88.5 Minus
3R 32079331 3R 16658883..16659040 1146..989 490 87.3 Minus
3R 32079331 3R 6801011..6801190 973..1152 450 83.3 Plus
3R 32079331 3R 6865321..6865475 991..1145 400 83.9 Plus
3R 32079331 3R 16810162..16810317 1146..991 390 83.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6582064..6583011 948..1 4740 100 Minus
3R 31820162 3R 6566216..6566520 1251..947 1525 100 Minus
3R 31820162 3R 6639184..6639348 1153..989 540 88.4 Minus
3R 31820162 3R 16399714..16399871 1146..989 490 87.3 Minus
3R 31820162 3R 6541842..6542021 973..1152 450 83.3 Plus
3R 31820162 3R 6606152..6606306 991..1145 400 83.8 Plus
3R 31820162 3R 16550993..16551148 1146..991 390 83.3 Minus
Blast to na_te.dros performed 2019-03-15 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 613..725 215..110 126 60.2 Minus

KHBD00542.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:06:24 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2651185..2651488 947..1250 100 <- Minus
chr3R 2667042..2667503 485..946 90 == Minus
chr3R 2667622..2667987 1..366 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-21 15:20:15 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RB 1..1251 1..1251 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:35:07 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RA 1..1251 1..1251 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:21:23 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RA 1..1251 1..1251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 15:20:14 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RB 472..1721 1..1250 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:35:07 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RA 625..1874 1..1250 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:23 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
Scr-RA 625..1874 1..1250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:06:24 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6825386..6825689 947..1250 100 <- Minus
3R 6841235..6842180 1..946 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:06:24 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6825386..6825689 947..1250 100 <- Minus
3R 6841235..6842180 1..946 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:06:24 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6825386..6825689 947..1250 100 <- Minus
3R 6841235..6842180 1..946 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:35:07 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2651108..2651411 947..1250 100 <- Minus
arm_3R 2666957..2667902 1..946 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:28:52 Download gff for KHBD00542.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6566217..6566520 947..1250 100 <- Minus
3R 6582066..6583011 1..946 100   Minus

KHBD00542.pep Sequence

Translation from 0 to 1251

> KHBD00542.pep
MDPDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSG
GVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAA
YGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQ
QQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNN
SQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGL
NNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN
PPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLT
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGH
PYHQFDIHPSQFAHLSA

KHBD00542.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17790-PA 447 GF17790-PA 1..390 1..391 1232 89.1 Plus
Dana\GF17792-PA 582 GF17792-PA 344..428 304..385 353 70.5 Plus
Dana\GF17789-PA 378 GF17789-PA 284..357 301..384 348 73.8 Plus
Dana\GF17922-PA 596 GF17922-PA 371..458 305..382 302 65.9 Plus
Dana\GF17924-PA 391 GF17924-PA 290..354 318..382 294 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10180-PA 467 GG10180-PA 50..467 1..417 2156 98.6 Plus
Dere\GG13676-PA 579 GG13676-PA 343..427 304..385 352 70.5 Plus
Dere\Antp-PA 374 GG10169-PA 151..353 156..384 305 41.3 Plus
Dere\GG16810-PA 592 GG16810-PA 369..456 305..382 304 65.9 Plus
Dere\Ubx-PA 381 GG16812-PA 281..345 318..382 298 80 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19477-PA 576 GH19477-PA 1..424 1..415 1383 78.6 Plus
Dgri\GH19479-PA 599 GH19479-PA 339..423 304..385 353 70.5 Plus
Dgri\GH19475-PA 385 GH19475-PA 291..364 301..384 346 73.8 Plus
Dgri\GH18074-PA 529 GH18074-PA 305..392 305..382 303 65.9 Plus
Dgri\GH19471-PA 382 GH19471-PA 281..345 318..382 294 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Scr-PB 417 CG1030-PB 1..417 1..417 2226 100 Plus
Scr-PA 417 CG1030-PA 1..417 1..417 2226 100 Plus
Antp-PJ 378 CG1028-PJ 109..357 117..384 405 41.2 Plus
Antp-PI 378 CG1028-PI 109..357 117..384 405 41.2 Plus
Antp-PL 378 CG1028-PL 109..357 117..384 405 41.2 Plus
Antp-PM 378 CG1028-PM 109..357 117..384 405 41.2 Plus
Antp-PN 374 CG1028-PN 109..353 117..384 403 40.9 Plus
Antp-PD 374 CG1028-PD 109..353 117..384 403 40.9 Plus
Antp-PF 365 CG1028-PF 109..344 117..384 401 41.9 Plus
Antp-PE 365 CG1028-PE 109..344 117..384 401 41.9 Plus
Antp-PK 361 CG1028-PK 109..340 117..384 399 41.5 Plus
Antp-PG 361 CG1028-PG 109..340 117..384 399 41.5 Plus
Dfd-PA 586 CG2189-PA 23..427 15..385 342 29.8 Plus
Ubx-PB 346 CG10388-PB 122..310 177..382 341 42.8 Plus
abd-A-PB 590 CG10325-PB 1..456 8..382 338 29 Plus
Ubx-PF 355 CG10388-PF 122..319 177..382 337 42.9 Plus
Ubx-PD 363 CG10388-PD 122..327 177..382 333 42.2 Plus
Ubx-PC 372 CG10388-PC 122..336 177..382 324 40.5 Plus
Ubx-PE 380 CG10388-PE 122..344 177..382 319 39.1 Plus
Ubx-PA 389 CG10388-PA 122..353 177..382 310 37.7 Plus
lab-PA 629 CG1264-PA 288..561 85..384 307 34 Plus
abd-A-PD 330 CG10325-PD 6..196 170..382 292 36.3 Plus
abd-A-PC 330 CG10325-PC 6..196 170..382 292 36.3 Plus
abd-A-PA 330 CG10325-PA 6..196 170..382 292 36.3 Plus
ftz-PA 410 CG2047-PA 205..323 266..396 277 48.9 Plus
B-H2-PA 645 CG5488-PA 167..438 70..382 276 27.8 Plus
cad-PB 427 CG1759-PB 58..336 78..387 266 28.2 Plus
cad-PA 427 CG1759-PA 58..336 78..387 266 28.2 Plus
pb-PD 772 CG31481-PD 38..246 177..382 260 37.2 Plus
cad-PC 445 CG1759-PC 58..354 78..387 256 27.9 Plus
pb-PC 777 CG31481-PC 38..251 177..382 255 36.4 Plus
pb-PB 777 CG31481-PB 38..251 177..382 255 36.4 Plus
pb-PA 782 CG31481-PA 38..256 177..382 251 36.1 Plus
CG18599-PA 475 CG18599-PA 11..375 26..383 242 25.9 Plus
ind-PB 320 CG11551-PB 25..284 57..381 234 32.1 Plus
B-H1-PA 544 CG5529-PA 94..357 150..382 229 30.3 Plus
lab-PB 213 CG1264-PB 20..145 256..384 225 46.9 Plus
Pdp1-PJ 633 CG17888-PJ 51..360 26..300 221 27.1 Plus
Pdp1-PD 647 CG17888-PD 51..360 26..300 221 27.1 Plus
zen2-PB 232 CG1048-PB 14..80 315..381 219 59.7 Plus
zen2-PA 252 CG1048-PA 34..100 315..381 219 59.7 Plus
Abd-B-PH 493 CG11648-PH 139..444 65..381 218 26.6 Plus
Abd-B-PB 493 CG11648-PB 139..444 65..381 218 26.6 Plus
Abd-B-PJ 270 CG11648-PJ 82..221 242..381 210 37.1 Plus
Abd-B-PI 270 CG11648-PI 82..221 242..381 210 37.1 Plus
Abd-B-PE 270 CG11648-PE 82..221 242..381 210 37.1 Plus
Abd-B-PD 270 CG11648-PD 82..221 242..381 210 37.1 Plus
Abd-B-PA 270 CG11648-PA 82..221 242..381 210 37.1 Plus
Abd-B-PC 270 CG11648-PC 82..221 242..381 210 37.1 Plus
Abd-B-PG 286 CG11648-PG 82..221 242..381 210 37.1 Plus
Abd-B-PF 323 CG11648-PF 82..221 242..381 210 37.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24715-PA 418 GI24715-PA 1..418 1..417 1365 79.3 Plus
Dmoj\GI24717-PA 592 GI24717-PA 334..418 304..385 352 70.5 Plus
Dmoj\GI23753-PA 529 GI23753-PA 305..392 305..382 303 65.9 Plus
Dmoj\GI24708-PA 379 GI24708-PA 278..342 318..382 293 80 Plus
Dmoj\GI24714-PA 454 GI24714-PA 254..327 312..385 287 64.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22040-PA 472 GL22040-PA 1..421 1..410 1390 82 Plus
Dper\GL22041-PA 602 GL22041-PA 349..433 304..385 355 70.5 Plus
Dper\GL22036-PA 395 GL22036-PA 301..374 301..384 348 73.8 Plus
Dper\GL23002-PA 562 GL23002-PA 345..432 305..382 303 65.9 Plus
Dper\GL23004-PA 387 GL23004-PA 286..350 318..382 293 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Scr-PB 426 GA10228-PB 1..426 1..417 1430 83.4 Plus
Dpse\Dfd-PA 604 GA15291-PA 349..433 304..385 355 70.5 Plus
Dpse\Antp-PA 392 GA10215-PA 298..371 301..384 348 73.8 Plus
Dpse\Ubx-PB 360 GA10294-PB 243..323 304..382 299 69.9 Plus
Dpse\Ubx-PC 368 GA10294-PC 243..331 304..382 299 66.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10524-PA 525 GM10524-PA 50..458 1..409 2146 99.5 Plus
Dsec\GM10914-PA 582 GM10914-PA 343..427 304..385 353 70.5 Plus
Dsec\GM10522-PA 374 GM10522-PA 151..353 156..384 305 41.3 Plus
Dsec\ftz-PA 413 GM10917-PA 208..320 266..387 301 50 Plus
Dsec\GM15411-PA 201 GM15411-PA 81..165 302..382 289 65.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19518-PA 463 GD19518-PA 50..463 1..417 2159 98.8 Plus
Dsim\GD19895-PA 582 GD19895-PA 343..427 304..385 352 70.5 Plus
Dsim\Ubx-PA 338 GD20270-PA 231..302 304..382 307 70.9 Plus
Dsim\GD19515-PA 374 GD19515-PA 151..353 156..384 305 41.3 Plus
Dsim\ftz-PA 413 GD19897-PA 208..320 266..387 299 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23929-PA 303 GJ23929-PA 90..188 317..415 568 97 Plus
Dvir\Antp-PA 376 GJ23927-PA 282..355 301..384 347 73.8 Plus
Dvir\GJ23932-PA 253 GJ23932-PA 38..100 323..385 314 82.5 Plus
Dvir\abd-A-PA 522 GJ10599-PA 295..382 305..382 303 65.9 Plus
Dvir\Ubx-PA 378 GJ23925-PA 277..341 318..382 294 80 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10826-PA 428 GK10826-PA 1..386 1..390 1242 81.8 Plus
Dwil\GK12253-PA 599 GK12253-PA 352..436 304..385 354 70.5 Plus
Dwil\GK10824-PA 374 GK10824-PA 205..353 237..384 350 49.1 Plus
Dwil\GK10825-PA 430 GK10825-PA 261..334 312..385 309 70.3 Plus
Dwil\GK13853-PA 582 GK13853-PA 356..443 305..382 302 65.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25827-PA 419 GE25827-PA 1..419 1..417 1431 89.1 Plus
Dyak\GE24883-PA 588 GE24883-PA 348..432 304..385 354 70.5 Plus
Dyak\GE25826-PA 375 GE25826-PA 152..354 156..384 305 41.3 Plus
Dyak\GE26127-PA 590 GE26127-PA 369..456 305..382 304 65.9 Plus
Dyak\Ubx-PA 381 GE26131-PA 281..345 318..382 298 80 Plus

KHBD00542.hyp Sequence

Translation from 1 to 1248

> KHBD00542.hyp
MDPDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSG
GVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAA
YGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQ
QQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNN
SQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGL
NNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN
PPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLT
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGH
PYHQFDIHPSQFAHLS

KHBD00542.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Scr-PB 417 CG1030-PB 1..416 1..416 2222 100 Plus
Scr-PA 417 CG1030-PA 1..416 1..416 2222 100 Plus
Antp-PJ 378 CG1028-PJ 109..357 117..384 405 41.2 Plus
Antp-PI 378 CG1028-PI 109..357 117..384 405 41.2 Plus
Antp-PL 378 CG1028-PL 109..357 117..384 405 41.2 Plus