Clone KHBD00647 Report

Search the DGRC for KHBD00647

Clone and Library Details

Library:KHBD
Tissue Source:
Created by:
Date Registered:2011-09-07
Comments:
Original Plate Number:10
Well:32
Vector:pDONR221
Associated Gene/Transcriptara-RB
Protein status:KHBD00647.pep: Inserted from web
Sequenced Size:Not sequenced

Clone Sequence Records

KHBD00647.complete Sequence

2127 bp (2127 high quality bases) assembled on 2011-07-12

> KHBD00647.complete
ATGGCTGCCTACACACAATTCGGATACGGAGGCTTTCCGTCGGCCTCGCA
GCTCCTGCCACCGAGTGTCCAGACGACGGAGGACGCTTCCGCGAACGTGA
ATGTGAATGTGAACGAGGCGCTGGTGATGACAAACGCCCCGGCGATGAGC
CCCACGGGAGGTCAGGATTGTCAGGGTAGCCAGCCGTCGGGCGGCGCTGG
CGGAGATGCCTCCTCGGGGGCGCTGAGTCCCAATGCGCTTTCGCAGAACT
CGAATGCGGCGACGGTGGTTGGAGCAGGTGGTGGATCCTCGGCGGGCGGA
GGAGGTCCAGCGGATCTGGCCACCGGTGGCTCCCTGGACGGCAACGGCGT
GGGCACGACGCCCACTGCTGGTGGTGCTGGTGGTGGTGGATCATGCTGTG
AGAACGGGCGGCCCATAATGACCGACCCGGTGTCGGGTCAGACGGTCTGC
TCCTGCCAGTACGATTCCGCCCGCCTCGCCCTCTCCAGCTACTCCCGTCT
ACCGGCGGCCAGCGTTGGCGTCTATGGAACGCCGTACCCCTCAACGGACC
AGAATCCCTACCAGAGCATCGGAGTGGACAGCTCCGCCTTCTATTCGCCG
CTGAGCAATCCGTACGGACTTAAGGATACGGGCGCGGGTCCGGAAATGGG
AGCTTGGACCTCGGCTGGACTTCAGCCCACTACGGGCTACTACTCCTACG
ATCCCATGTCGGCCTACGGCTATGGAGCCAGTTACGACCTGGCTGCTCGT
CGCAAAAATGCCACGCGGGAATCCACGGCCACATTGAAGGCCTGGCTAAA
TGAGCACAAGAAGAATCCGTATCCCACAAAGGGTGAGAAGATCATGCTGG
CCATCATCACCAAGATGACCCTCACCCAGGTGTCCACTTGGTTCGCCAAT
GCGCGTCGGCGACTGAAGAAGGAGAACAAGATGACGTGGGAGCCCAAGAA
TCGCACAGATGACGATGATGACGCCTTGGTGTCGGACGATGAGAAGGACA
AGGAGGATCTGGAGCCGAGTAAGGGCAGCCAGGGCAGTGTCAGTTTGGCC
AAAGATGAGACCAAAGAGGAGGAGGATGCCATAGATGAGGACCAAAAGTG
CCTCGGTCAGGCGAACATACTGCGCGCCGGCTTTGGTTATCCCTCAGCCG
GAAGTGGTAGTGGTGGTTACCCCGGCGGAGGTGGCTCCTCCAGTGGCCAC
CCCGGTGGCTACCATCCGTATCATCATCAGCATCCCGCTTACTATCAGGC
TGGCCAGCAGGGCGGTATGTTGCCATTTCATGGGGAGAACTCCAAACTGC
AGACGGATCTTGGGGATCCAAAAAACCAGCTAGGCCGGGACTGTGGCGTG
CCGATTCCAGCTACCAAGCCGAAGATCTGGAGTCTGGCCGACACAGTTGG
CTGCAAGACACCGCCGCCGGCTTACATGGGTCACCAATCGATGCCTCTGC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGCGCAGCACCAGTAT
CCTCCATCGGAGGCAGGACGAGATCAACAGCTGTTCAATGGGGCCGCAGC
TCCATACCTGAGGCCGCACACCACGGCCTACGGGGGTTTTCTAGGGGCTA
CGACCCAGCAACTGCATACTACGAACAACAGTATCCCCTACAGCAATATG
CCCCCGCAGCAGCAGCAGCCGCAGCAGCAGCAGCAGCAGTTGCAGCAGGG
CGGTACCATCCATACTACGGGAAGTTCGAGCGGACCAATAATACCGCTGC
AGTTCCACAATCGGCATCCGCAGCAGCAGCAGCAACTGCAGCAGCAATCT
CAATCCACAGCGAGTCAGCGGGCGATGGGGTTTCTCGAAGCCCAACCAGA
TACTCCACCCCAAACTCCGCCGAATATGAAGGTGCTGAGCGGAGCTTTGA
GTCTCCTGCCTACCGCTACTCAAGTCCCTATGACCGCTACCTGTCGCAGT
AGTAACGCCTTTGGCTTCCCCGCCAGCGGTTACCCGATGAATTTCTCGGC
CAGATTGGGGGAGTATTCGCCGCGTGATGATTACAGCAGCGGGAACAGCA
GCAGCAGCAGCTCCTCATCGCCGCAGCTGCAAAGGAATGAGGCCATGTTC
AAGCCGCTCTTCAAGAAGTTCACCAAC

KHBD00647.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12585065..12586142 1053..2127 5185 99.1 Plus
chr3L 24539361 chr3L 12576245..12576797 48..603 2685 99.3 Plus
chr3L 24539361 chr3L 12584669..12585004 719..1054 1680 100 Plus
chr3L 24539361 chr3L 12608854..12609098 760..1004 850 89.8 Plus
chr3L 24539361 chr3L 12697816..12698026 760..970 590 85.3 Plus
chr3L 24539361 chr3L 12580009..12580125 603..719 585 100 Plus
chr3L 24539361 chr3L 12571609..12571659 1..51 255 100 Plus
chr3L 24539361 chr3L 12610445..12610543 1320..1418 210 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12594584..12595658 1053..2127 5375 100 Plus
3L 28110227 3L 12585738..12586293 48..603 2765 99.8 Plus
3L 28110227 3L 12594188..12594523 719..1054 1680 100 Plus
3L 28110227 3L 12618382..12618626 760..1004 850 89.8 Plus
3L 28110227 3L 12707412..12707622 760..970 590 85.3 Plus
3L 28110227 3L 12589518..12589634 603..719 585 100 Plus
3L 28110227 3L 12581103..12581153 1..51 255 100 Plus
3L 28110227 3L 12619948..12620046 1320..1418 210 80.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12587684..12588758 1053..2127 5375 100 Plus
3L 28103327 3L 12578838..12579393 48..603 2765 99.8 Plus
3L 28103327 3L 12587288..12587623 719..1054 1680 100 Plus
3L 28103327 3L 12611482..12611726 760..1004 850 89.7 Plus
3L 28103327 3L 12700512..12700722 760..970 590 85.3 Plus
3L 28103327 3L 12582618..12582734 603..719 585 100 Plus
3L 28103327 3L 12574203..12574253 1..51 255 100 Plus
3L 28103327 3L 12613048..12613146 1320..1418 210 80.8 Plus
3L 28103327 3L 12610161..12610253 388..480 165 78.4 Plus
3L 28103327 3L 12610299..12610378 514..593 160 80 Plus
Blast to na_te.dros performed on 2019-03-15 11:06:49 has no hits.

KHBD00647.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:08:18 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12571609..12571659 1..51 100 -> Plus
chr3L 12576249..12576797 52..603 99 -> Plus
chr3L 12580010..12580125 604..719 100 -> Plus
chr3L 12584670..12585004 720..1054 100 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-21 15:20:26 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
ara-RB 1..2127 1..2127 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:35:54 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
ara-RB 1..2127 1..2127 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:22:16 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
ara-RB 1..2127 1..2127 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 15:20:26 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
ara-RB 430..2556 1..2127 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:35:54 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
ara-RB 432..2558 1..2127 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:16 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
ara-RB 432..2558 1..2127 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:18 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12581103..12581153 1..51 100 -> Plus
3L 12585742..12586293 52..603 99 -> Plus
3L 12589519..12589634 604..719 100 -> Plus
3L 12594189..12594523 720..1054 100 -> Plus
3L 12594586..12595658 1055..2127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:18 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12581103..12581153 1..51 100 -> Plus
3L 12585742..12586293 52..603 99 -> Plus
3L 12589519..12589634 604..719 100 -> Plus
3L 12594189..12594523 720..1054 100 -> Plus
3L 12594586..12595658 1055..2127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:18 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12581103..12581153 1..51 100 -> Plus
3L 12585742..12586293 52..603 99 -> Plus
3L 12589519..12589634 604..719 100 -> Plus
3L 12594189..12594523 720..1054 100 -> Plus
3L 12594586..12595658 1055..2127 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:35:54 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12574203..12574253 1..51 100 -> Plus
arm_3L 12578842..12579393 52..603 99 -> Plus
arm_3L 12582619..12582734 604..719 100 -> Plus
arm_3L 12587289..12587623 720..1054 100 -> Plus
arm_3L 12587686..12588758 1055..2127 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:29:00 Download gff for KHBD00647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12578842..12579393 52..603 99 -> Plus
3L 12582619..12582734 604..719 100 -> Plus
3L 12587289..12587623 720..1054 100 -> Plus
3L 12587686..12588758 1055..2127 100   Plus
3L 12574203..12574253 1..51 100 -> Plus

KHBD00647.pep Sequence

Translation from 0 to 2127

> KHBD00647.pep
MAAYTQFGYGGFPSASQLLPPSVQTTEDASANVNVNVNEALVMTNAPAMS
PTGGQDCQGSQPSGGAGGDASSGALSPNALSQNSNAATVVGAGGGSSAGG
GGPADLATGGSLDGNGVGTTPTAGGAGGGGSCCENGRPIMTDPVSGQTVC
SCQYDSARLALSSYSRLPAASVGVYGTPYPSTDQNPYQSIGVDSSAFYSP
LSNPYGLKDTGAGPEMGAWTSAGLQPTTGYYSYDPMSAYGYGASYDLAAR
RKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN
ARRRLKKENKMTWEPKNRTDDDDDALVSDDEKDKEDLEPSKGSQGSVSLA
KDETKEEEDAIDEDQKCLGQANILRAGFGYPSAGSGSGGYPGGGGSSSGH
PGGYHPYHHQHPAYYQAGQQGGMLPFHGENSKLQTDLGDPKNQLGRDCGV
PIPATKPKIWSLADTVGCKTPPPAYMGHQSMPLQQQQQQQQQQQQAQHQY
PPSEAGRDQQLFNGAAAPYLRPHTTAYGGFLGATTQQLHTTNNSIPYSNM
PPQQQQPQQQQQQLQQGGTIHTTGSSSGPIIPLQFHNRHPQQQQQLQQQS
QSTASQRAMGFLEAQPDTPPQTPPNMKVLSGALSLLPTATQVPMTATCRS
SNAFGFPASGYPMNFSARLGEYSPRDDYSSGNSSSSSSSSPQLQRNEAMF
KPLFKKFTN

KHBD00647.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24688-PA 731 GF24688-PA 1..731 1..709 2224 70.6 Plus
Dana\GF24689-PA 663 GF24689-PA 1..490 1..482 1085 52 Plus
Dana\GF24692-PA 661 GF24692-PA 46..343 57..334 507 44.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15584-PA 727 GG15584-PA 1..727 1..709 3488 93.6 Plus
Dere\GG15585-PA 813 GG15585-PA 155..622 44..489 898 48.7 Plus
Dere\GG15588-PA 641 GG15588-PA 119..332 132..334 502 51.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14715-PA 791 GH14715-PA 1..788 1..708 1891 63 Plus
Dgri\GH14716-PA 733 GH14716-PA 1..506 1..482 1068 51.1 Plus
Dgri\GH14720-PA 669 GH14720-PA 71..525 75..532 519 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
ara-PB 709 CG10571-PB 1..709 1..709 3781 100 Plus
ara-PA 717 CG10571-PA 1..717 1..709 3762 98.9 Plus
caup-PA 693 CG10605-PA 1..609 1..630 1301 46.4 Plus
mirr-PB 641 CG10601-PB 47..473 47..485 619 40.4 Plus
mirr-PA 641 CG10601-PA 47..473 47..485 619 40.4 Plus
mirr-PC 682 CG10601-PC 47..473 47..485 619 40.4 Plus
Vsx1-PB 837 CG4136-PB 190..701 27..519 188 22.2 Plus
Vsx1-PA 837 CG4136-PA 190..701 27..519 188 22.2 Plus
Smr-PG 3607 CG4013-PG 127..309 479..662 170 30.8 Plus
Atx2-PA 888 CG5166-PA 361..595 381..601 164 30.1 Plus
Atx2-PD 1023 CG5166-PD 361..595 381..601 164 30.1 Plus
Atx2-PC 1023 CG5166-PC 361..595 381..601 164 30.1 Plus
Atx2-PB 1084 CG5166-PB 422..656 381..601 164 30.1 Plus
pros-PK 1535 CG17228-PK 1020..1256 403..643 163 28.5 Plus
pros-PI 1835 CG17228-PI 1320..1556 403..643 163 28.5 Plus
CG32532-PD 688 CG32532-PD 106..314 482..700 161 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12261-PA 745 GI12261-PA 1..743 1..709 2044 66.4 Plus
Dmoj\GI12262-PA 718 GI12262-PA 1..523 1..482 1087 50.3 Plus
Dmoj\GI12266-PA 735 GI12266-PA 153..483 132..464 499 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25202-PA 473 GL25202-PA 1..446 1..424 1504 78.8 Plus
Dper\GL25204-PA 688 GL25204-PA 1..475 1..482 1011 51.4 Plus
Dper\GL25205-PA 639 GL25205-PA 109..436 125..464 512 43.3 Plus
Dper\GL25203-PA 209 GL25203-PA 154..209 652..709 184 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10403-PA 780 GA10403-PA 1..780 1..709 2138 70.4 Plus
Dpse\GA10434-PA 682 GA10434-PA 1..473 1..482 1077 52.6 Plus
Dpse\GA10430-PA 639 GA10430-PA 109..436 125..464 512 43.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25355-PA 384 GM25355-PA 1..367 1..367 1876 98.1 Plus
Dsec\GM25358-PA 680 GM25358-PA 1..483 1..482 980 50.1 Plus
Dsec\GM25356-PA 159 GM25356-PA 1..159 550..709 759 95.7 Plus
Dsec\GM25364-PA 547 GM25364-PA 25..238 132..334 492 50.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14388-PA 597 GD14388-PA 89..597 202..709 2604 96.9 Plus
Dsim\GD14390-PA 687 GD14390-PA 1..489 1..482 992 49.4 Plus
Dsim\GD14396-PA 641 GD14396-PA 119..332 132..334 501 50.9 Plus
Dsim\GD14388-PA 597 GD14388-PA 1..88 1..88 434 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11492-PA 756 GJ11492-PA 1..753 1..708 1986 65.8 Plus
Dvir\GJ11493-PA 698 GJ11493-PA 1..632 1..629 1128 45.7 Plus
Dvir\GJ11496-PA 575 GJ11496-PA 170..499 132..464 507 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10560-PA 736 GK10560-PA 1..736 1..709 2102 64.1 Plus
Dwil\GK10562-PA 661 GK10562-PA 1..474 1..485 1028 50.3 Plus
Dwil\GK25452-PA 620 GK25452-PA 104..499 132..538 523 40.3 Plus
Dwil\GK10561-PA 167 GK10561-PA 59..167 607..709 277 71.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21912-PA 719 GE21912-PA 1..719 1..709 3522 95.3 Plus
Dyak\GE21913-PA 689 GE21913-PA 1..490 1..482 1002 49.6 Plus
Dyak\GE21915-PA 642 GE21915-PA 120..333 132..334 502 51.7 Plus

KHBD00647.hyp Sequence

Translation from 1 to 2127

> KHBD00647.hyp
MAAYTQFGYGGFPSASQLLPPSVQTTEDASANVNVNVNEALVMTNAPAMS
PTGGQDCQGSQPSGGAGGDASSGALSPNALSQNSNAATVVGAGGGSSAGG
GGPADLATGGSLDGNGVGTTPTAGGAGGGGSCCENGRPIMTDPVSGQTVC
SCQYDSARLALSSYSRLPAASVGVYGTPYPSTDQNPYQSIGVDSSAFYSP
LSNPYGLKDTGAGPEMGAWTSAGLQPTTGYYSYDPMSAYGYGASYDLAAR
RKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN
ARRRLKKENKMTWEPKNRTDDDDDALVSDDEKDKEDLEPSKGSQGSVSLA
KDETKEEEDAIDEDQKCLGQANILRAGFGYPSAGSGSGGYPGGGGSSSGH
PGGYHPYHHQHPAYYQAGQQGGMLPFHGENSKLQTDLGDPKNQLGRDCGV
PIPATKPKIWSLADTVGCKTPPPAYMGHQSMPLQQQQQQQQQQQQAQHQY
PPSEAGRDQQLFNGAAAPYLRPHTTAYGGFLGATTQQLHTTNNSIPYSNM
PPQQQQPQQQQQQLQQGGTIHTTGSSSGPIIPLQFHNRHPQQQQQLQQQS
QSTASQRAMGFLEAQPDTPPQTPPNMKVLSGALSLLPTATQVPMTATCRS
SNAFGFPASGYPMNFSARLGEYSPRDDYSSGNSSSSSSSSPQLQRNEAMF
KPLFKKFTN

KHBD00647.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
ara-PB 709 CG10571-PB 1..709 1..709 3781 100 Plus
ara-PA 717 CG10571-PA 1..717 1..709 3762 98.9 Plus
caup-PA 693 CG10605-PA 1..609 1..630 1301 46.4 Plus
mirr-PB 641 CG10601-PB 47..473 47..485 619 40.4 Plus
mirr-PA 641 CG10601-PA 47..473 47..485 619 40.4 Plus