Clone KHBD00698 Report

Search the DGRC for KHBD00698

Clone and Library Details

Library:KHBD
Tissue Source:
Created by:
Date Registered:2011-09-07
Comments:
Original Plate Number:10
Well:45
Vector:pDONR221
Associated Gene/TranscriptSu(var)3-7-RA
Protein status:KHBD00698.pep: Inserted from web
Sequenced Size:Not sequenced

Clone Sequence Records

KHBD00698.complete Sequence

3750 bp (3750 high quality bases) assembled on 2011-07-12

> KHBD00698.complete
ATGGATCGGGATTCGAGCATGCAGGCGAAAAACCTAGATGCTCAATGCAA
CCCAGACCTCAAAATGGCGTCTGCAAATTCAGAAACTTTAGCGTCGGCAA
CGCACGAGCTGAAAATTATGGACGTAGAGGGTGGTGCTCTGGTGGATCCG
GATCACATCGAGGAAGTGGAGACCTCCATGGTCATCGTGGTGGATGATGA
CGATGGGGATGTGGCCATGGTGGTGGAGGAGGACAAGCACCCGATGCGGG
ATGACCCGTGTATTGAGGACATCATGGATGACGAACATGCTCCATTGGTG
GCCGAGCTACAGTCCGCTCTAAATAACCCAGACGACAAACAGGCCAGCGA
GGATCCCCTCCTGGAAGACCAGGAACGTGAACCCGATGCCATGTCCACTA
AAACTGAACCCTCCAGCGATGCGGAGAGCTCCCATTCGTACCACGATCCC
ATGGGCCTGCTGGAGAGGATTGAAATCCATGATCCGGGAGACAGCCAGGA
TGACGACGACGAGGATGACGAAAGCAGCAATGGCGGTGGCGTTGACGGAG
GCATGCGCCGCAAGATGCCCCGCGCACAGCGCTGGCTCCTCTGGATGAAG
CGTTGGCCCTGGATCCTACACGAGGACTCCGATGGCACCTTAGCGTTCTG
CCTTTACTGCAACATATCCATTAACGTGAACAACCGCTCTAGACACATCC
AACAGCACAACGTGTCGCTCTCCCACCAGGAACGCGAGTGCAACTATCTG
GCATTCAAGAAAAGTGAGGAGGAAACTCGAGGAGCAATCAGCGACAACGA
AATCAAGCACGAATTCGGCACCAAGAGCTATGTGGCCGCCATGAAGCAAA
AACGAATCTCCGAGACCGAGGCATTTAACAACTTCAACTGGCTGCGTTGG
CTCCGTTGGCATCCTTGGCTTGAACGTTCCATGCCCACAGGGACCATCGG
GACATGTCGCATCTGCAGCGTGCGAATGAACGTGGAGTTTGTCTATTTGC
GCAAGCGCCACGAAACCACCAAAGGTCACATGGAGGCACTGCGCAACCTA
GATTCCGATAAGCGGAGTCGGAAGCGAAAGAGGAGCAAGAGCAACAGCGT
GACCAATAGCGGCGGGGATGAGGCCGAGCGAGAGAAGGAATCTGAACCAG
AAGTTGGGCCGGAGGATGCTCAGGACACCCCTGTGGTTATGATGAACGGC
GATGTGGACTCAGGCGACGACCCTGGCAAGTGGTGTGCACTGATTCCGGA
CACCAATCCACAGCAATGCCGATGTACGCTCTGCAACTGCACAATGGCGA
TTACCAGCTTCCTACGGCACTGTAAAACCAGAGCTCATTGTCACATGCTA
TCGACACCCGCTGAAAAGGGCTCTTCAGATATTCGCGGCATTTGGGCCGT
GTTCGCCGACATGCATCCTTGGTTGATTGCTGATCCCGAAGACCCCAGCA
TTGGGTACTGCAGCGTCTGTCGCAAGCGATTCATGTATGGAAACTCAGAG
ATCAAGCGCAAGAATCACGAAAAATCCGAGAAGCATACCTTGGCTTTGGC
CAGCGCCAAGGCAGGCATCGAAGTTGGTTCGGCTGACGGCAGAGGCGGCG
ATAACATGGATGAAGAGGAAGCGGCGGCAAGTGATCAAGCCCAGTCATCG
CAGACCGATGACAGCGAAGATAATGACGATGACAATTGGTCCGAGATCCA
AAAACTCGGAAAAGGTTTTGCTCATAAGTCCTCTAGCGAGCCAAGAAAGG
CCACGGTTCGCGCTGGGGTACGTTTTTACCCGTGGCTTTGCTACTCCAAG
GACCGAAAGACTCAGATTTGCAAATTCTGCCGCGTGCGCTTTCACAACGA
AGCGGCAAAGGCGCGGCATGAGTTGAGTGCCCGGCATGTAAAGCTGGTAA
AGCAGTTCAAAATGCGGCAAGCGAAACTGCACCAGGGCACAAACACGCAA
ACTAAACATAATGCGCAGGATGATGAAGAATCACAGGAACAGGACGAGGA
ATATGGAGAAGAAGAGGAGGACGCAGAAGAAGATTCCCAAAGCAACTTCG
ACTTGGGCACCGTGCAGGCAAGAAAGACTGCTCGAGCGGACAATAAGCTT
TTTGTCAAGCCCATTCCGGCAACCATGAAGGGCAAGGTTATGGTGTGGAA
GGGCCGCTTCCCGTGGCTCTCCTACAAAAAGAACGAGCAGCGTGGAAACT
ATGCTTGGTGCAAGCTGTGCGAAGTGTCTCTCTACCTGCCCTCATCCAAG
TGGGCCTCCAAGCACCAGAGGACTTCCCGACACATACGCCTCCGCATTGA
TCGAAAGCGCAATGGTGGCAACCCTTTGAAAACATCGAACAAAAACTCAG
GTGAAATATCCACTGTTGTGGCCACAGCTTCGGCTTTGGCCAGCGCCGAG
GCTAGACAGAAAGCGGCTATGGCAGAGCTGCAAGCGAAGTACGACTGGCT
GGATCCTGATGCCAATGACGAGAATCACTGTCACTGCCGTGTTTGTGATA
GCCGGCTGCCGATCAAGGTATTTTACCTGCGGCAACACGACGCTTCGCGT
AAGCACGTCGAAAATAAGGAGCGGCAAAGGGCCAATGCCGCCGCTGCCGC
CAATGCACCATCAGTTAGTCCCACTTCCACCGTTGATGCGGAAAGGCAGG
AGTCTGGAATGGACAAGGAGAGCGAAAACGATATGAGCGTTCGATCCGAT
GGCAGCACAGCGGAACCGCTGGCGAAGCGGTCCCGACGCTCAATGGAGGT
TCGTCGCATAATACGCGCCCTTCGCGACTCAATGGGCAAGCGACAGGAAG
AACGCTCCCAAATGGACATGGCCAGGGACATGATATGCTCGTCGTTTGAT
ATTGTTACACGCTTGCGAACTTTGGAACGGGAGTCGGTCGCACATAACGA
GTCTATGGCCCAGGCGCCGCCATCGGTGACAGTGTCACCGATTAAGCCAC
CGGAGCCACGACATGTAATGGATCTCTTCTTTGACAGCATTTCGCCGACC
ATGAAGTCCCTGCCGCCGGATTTAGCCGCAGAGGGCAAGTCGAAAATCAT
GCAGCTCGTTTGTAGCTTGGAGCTTCGAGCCATGCAGAGAAATGCGACAA
CTCCAACCCCAGCTACAGTTTCTGCTTCCTCGAAATGGCCTTCTTCAACT
ACGGTGACCCCAGTTAAAACTCCTCCTGCTCCTATTTCAGCTCCCCTTGC
TTCTGTCGATGCAGATTTGCATTCCTCGGTTGTCACAACACCGCATGAAT
ACAATAATGGGCAGAACAATAATAACGACAAGGAAACCGTACCGAAAGAG
CCAGTTACCGGGGCTTCCTCTGCCCAAGTGACCATCAATGGGAGCGCCAA
AGACCTGCCAGAGAATATACGCCGTATCTTAACTTCCAACCAAACGCAAG
TGACCAACCGCCTCGAGACGGATTCCGTGCGTTGTGTACCTCTTGACAAA
CTAACAACACAGAGTCGGACCAACGTGAACGGACGACTCAGTCAAGGTGG
CACTTCGGAAGCACCATCCACCCCACAGGCGGACCTTAGCAATGGTAACA
CGTTGGCCATGATCAGGCAGATACGGGTTAACAATAACAACAGTTCCAAG
ATCACCGTTACTAATACGCCTCAGATGCAACAGCCGCAGCAGGCACAGGC
AAGCATAACGTCCTCGACTCCAATAATGCGTGGTGGTCCCAGCAGCAACG
GTTGTCAAATCACAACATTTCGGACAATGGTGAACCATAACCGCAGGCCA

KHBD00698.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9092975..9094031 2693..3749 5255 99.8 Plus
chr3R 27901430 chr3R 9091930..9092908 1715..2693 4895 100 Plus
chr3R 27901430 chr3R 9089659..9090443 1..785 3925 100 Plus
chr3R 27901430 chr3R 9090878..9091462 786..1370 2910 99.8 Plus
chr3R 27901430 chr3R 9091530..9091875 1370..1715 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13267832..13268889 2693..3750 5290 100 Plus
3R 32079331 3R 13266787..13267765 1715..2693 4895 100 Plus
3R 32079331 3R 13264516..13265300 1..785 3925 100 Plus
3R 32079331 3R 13265735..13266319 786..1370 2925 100 Plus
3R 32079331 3R 13266387..13266732 1370..1715 1730 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13008663..13009720 2693..3750 5290 100 Plus
3R 31820162 3R 13007618..13008596 1715..2693 4895 100 Plus
3R 31820162 3R 13005347..13006131 1..785 3925 100 Plus
3R 31820162 3R 13006566..13007150 786..1370 2925 100 Plus
3R 31820162 3R 13007218..13007563 1370..1715 1730 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:07:37 has no hits.

KHBD00698.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:08:38 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9089659..9090443 1..785 100 -> Plus
chr3R 9090878..9091462 786..1370 99 -> Plus
chr3R 9091531..9091875 1371..1715 100 -> Plus
chr3R 9091931..9092181 1716..1966 100 == Plus
chr3R 9092249..9092908 2034..2693 100 -> Plus
chr3R 9092976..9094031 2694..3749 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-21 15:20:35 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-7-RA 1..3750 1..3750 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:36:33 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-7-RA 1..3750 1..3750 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:23:06 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-7-RA 1..3750 1..3750 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 15:20:35 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-7-RA 162..3910 1..3749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:36:33 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-7-RA 153..3901 1..3749 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:06 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-7-RA 153..3901 1..3749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:38 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13264516..13265300 1..785 100 -> Plus
3R 13265735..13266319 786..1370 100 -> Plus
3R 13266388..13266732 1371..1715 100 -> Plus
3R 13266788..13267765 1716..2693 100 -> Plus
3R 13267833..13268888 2694..3749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:38 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13264516..13265300 1..785 100 -> Plus
3R 13265735..13266319 786..1370 100 -> Plus
3R 13266388..13266732 1371..1715 100 -> Plus
3R 13266788..13267765 1716..2693 100 -> Plus
3R 13267833..13268888 2694..3749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:38 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13264516..13265300 1..785 100 -> Plus
3R 13265735..13266319 786..1370 100 -> Plus
3R 13266388..13266732 1371..1715 100 -> Plus
3R 13266788..13267765 1716..2693 100 -> Plus
3R 13267833..13268888 2694..3749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:36:33 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9090238..9091022 1..785 100 -> Plus
arm_3R 9091457..9092041 786..1370 100 -> Plus
arm_3R 9092110..9092454 1371..1715 100 -> Plus
arm_3R 9092510..9093487 1716..2693 100 -> Plus
arm_3R 9093555..9094610 2694..3749 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:29:01 Download gff for KHBD00698.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13007219..13007563 1371..1715 100 -> Plus
3R 13005347..13006131 1..785 100 -> Plus
3R 13006566..13007150 786..1370 100 -> Plus
3R 13007619..13008596 1716..2693 100 -> Plus
3R 13008664..13009719 2694..3749 100   Plus

KHBD00698.pep Sequence

Translation from 0 to 3750

> KHBD00698.pep
MDRDSSMQAKNLDAQCNPDLKMASANSETLASATHELKIMDVEGGALVDP
DHIEEVETSMVIVVDDDDGDVAMVVEEDKHPMRDDPCIEDIMDDEHAPLV
AELQSALNNPDDKQASEDPLLEDQEREPDAMSTKTEPSSDAESSHSYHDP
MGLLERIEIHDPGDSQDDDDEDDESSNGGGVDGGMRRKMPRAQRWLLWMK
RWPWILHEDSDGTLAFCLYCNISINVNNRSRHIQQHNVSLSHQERECNYL
AFKKSEEETRGAISDNEIKHEFGTKSYVAAMKQKRISETEAFNNFNWLRW
LRWHPWLERSMPTGTIGTCRICSVRMNVEFVYLRKRHETTKGHMEALRNL
DSDKRSRKRKRSKSNSVTNSGGDEAEREKESEPEVGPEDAQDTPVVMMNG
DVDSGDDPGKWCALIPDTNPQQCRCTLCNCTMAITSFLRHCKTRAHCHML
STPAEKGSSDIRGIWAVFADMHPWLIADPEDPSIGYCSVCRKRFMYGNSE
IKRKNHEKSEKHTLALASAKAGIEVGSADGRGGDNMDEEEAAASDQAQSS
QTDDSEDNDDDNWSEIQKLGKGFAHKSSSEPRKATVRAGVRFYPWLCYSK
DRKTQICKFCRVRFHNEAAKARHELSARHVKLVKQFKMRQAKLHQGTNTQ
TKHNAQDDEESQEQDEEYGEEEEDAEEDSQSNFDLGTVQARKTARADNKL
FVKPIPATMKGKVMVWKGRFPWLSYKKNEQRGNYAWCKLCEVSLYLPSSK
WASKHQRTSRHIRLRIDRKRNGGNPLKTSNKNSGEISTVVATASALASAE
ARQKAAMAELQAKYDWLDPDANDENHCHCRVCDSRLPIKVFYLRQHDASR
KHVENKERQRANAAAAANAPSVSPTSTVDAERQESGMDKESENDMSVRSD
GSTAEPLAKRSRRSMEVRRIIRALRDSMGKRQEERSQMDMARDMICSSFD
IVTRLRTLERESVAHNESMAQAPPSVTVSPIKPPEPRHVMDLFFDSISPT
MKSLPPDLAAEGKSKIMQLVCSLELRAMQRNATTPTPATVSASSKWPSST
TVTPVKTPPAPISAPLASVDADLHSSVVTTPHEYNNGQNNNNDKETVPKE
PVTGASSAQVTINGSAKDLPENIRRILTSNQTQVTNRLETDSVRCVPLDK
LTTQSRTNVNGRLSQGGTSEAPSTPQADLSNGNTLAMIRQIRVNNNNSSK
ITVTNTPQMQQPQQAQASITSSTPIMRGGPSSNGCQITTFRTMVNHNRRP

KHBD00698.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17587-PA 1234 GF17587-PA 7..1234 8..1250 3431 57.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19522-PA 1253 GG19522-PA 1..1253 1..1250 5130 81 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18425-PA 1270 GH18425-PA 10..1109 35..1158 2293 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-7-PA 1250 CG8599-PA 1..1250 1..1250 6590 100 Plus
Su(var)3-7-PB 1248 CG8599-PB 1..1248 1..1250 6569 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24326-PA 1219 GI24326-PA 82..1180 122..1224 2497 47.9 Plus
Dmoj\GI24218-PA 376 GI24218-PA 291..346 985..1040 158 53.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24399-PA 1195 GL24399-PA 20..1174 21..1230 2719 51.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26601-PA 1191 GA26601-PA 20..1170 21..1230 2713 51.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24093-PA 1243 GM24093-PA 1..1243 1..1250 5437 90 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18892-PA 1215 GD18892-PA 1..1215 1..1250 5409 88.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Su(var)3-7-PA 1281 GJ10411-PA 24..1204 21..1201 2407 45.6 Plus
Dvir\GJ10788-PA 401 GJ10788-PA 310..368 984..1041 158 55.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22413-PA 1176 GK22413-PA 1..1151 30..1234 2391 44.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26256-PA 1246 GE26256-PA 1..1246 1..1250 5017 80.5 Plus

KHBD00698.hyp Sequence

Translation from 1 to 3747

> KHBD00698.hyp
MDRDSSMQAKNLDAQCNPDLKMASANSETLASATHELKIMDVEGGALVDP
DHIEEVETSMVIVVDDDDGDVAMVVEEDKHPMRDDPCIEDIMDDEHAPLV
AELQSALNNPDDKQASEDPLLEDQEREPDAMSTKTEPSSDAESSHSYHDP
MGLLERIEIHDPGDSQDDDDEDDESSNGGGVDGGMRRKMPRAQRWLLWMK
RWPWILHEDSDGTLAFCLYCNISINVNNRSRHIQQHNVSLSHQERECNYL
AFKKSEEETRGAISDNEIKHEFGTKSYVAAMKQKRISETEAFNNFNWLRW
LRWHPWLERSMPTGTIGTCRICSVRMNVEFVYLRKRHETTKGHMEALRNL
DSDKRSRKRKRSKSNSVTNSGGDEAEREKESEPEVGPEDAQDTPVVMMNG
DVDSGDDPGKWCALIPDTNPQQCRCTLCNCTMAITSFLRHCKTRAHCHML
STPAEKGSSDIRGIWAVFADMHPWLIADPEDPSIGYCSVCRKRFMYGNSE
IKRKNHEKSEKHTLALASAKAGIEVGSADGRGGDNMDEEEAAASDQAQSS
QTDDSEDNDDDNWSEIQKLGKGFAHKSSSEPRKATVRAGVRFYPWLCYSK
DRKTQICKFCRVRFHNEAAKARHELSARHVKLVKQFKMRQAKLHQGTNTQ
TKHNAQDDEESQEQDEEYGEEEEDAEEDSQSNFDLGTVQARKTARADNKL
FVKPIPATMKGKVMVWKGRFPWLSYKKNEQRGNYAWCKLCEVSLYLPSSK
WASKHQRTSRHIRLRIDRKRNGGNPLKTSNKNSGEISTVVATASALASAE
ARQKAAMAELQAKYDWLDPDANDENHCHCRVCDSRLPIKVFYLRQHDASR
KHVENKERQRANAAAAANAPSVSPTSTVDAERQESGMDKESENDMSVRSD
GSTAEPLAKRSRRSMEVRRIIRALRDSMGKRQEERSQMDMARDMICSSFD
IVTRLRTLERESVAHNESMAQAPPSVTVSPIKPPEPRHVMDLFFDSISPT
MKSLPPDLAAEGKSKIMQLVCSLELRAMQRNATTPTPATVSASSKWPSST
TVTPVKTPPAPISAPLASVDADLHSSVVTTPHEYNNGQNNNNDKETVPKE
PVTGASSAQVTINGSAKDLPENIRRILTSNQTQVTNRLETDSVRCVPLDK
LTTQSRTNVNGRLSQGGTSEAPSTPQADLSNGNTLAMIRQIRVNNNNSSK
ITVTNTPQMQQPQQAQASITSSTPIMRGGPSSNGCQITTFRTMVNHNRR

KHBD00698.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-7-PA 1250 CG8599-PA 1..1249 1..1249 6583 100 Plus
Su(var)3-7-PB 1248 CG8599-PB 1..1247 1..1249 6562 99.8 Plus