Clone LD01461 Report

Search the DGRC for LD01461

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:14
Well:61
Vector:pBS SK-
Associated Gene/TranscriptCG7945-RA
Protein status:LD01461.pep: gold
Preliminary Size:1603
Sequenced Size:1440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7945 2001-10-10 Blastp of sequenced clone
CG7945 2003-01-01 Sim4 clustering to Release 3
CG7945 2008-04-29 Release 5.5 accounting
CG7945 2008-08-15 Release 5.9 accounting
CG7945 2008-12-18 5.12 accounting

Clone Sequence Records

LD01461.complete Sequence

1440 bp (1440 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061044

> LD01461.complete
TACAAATCCCACAATATAATGTTAAATTAATCATATTTATACTTATCTTC
ATTTAAGTAAAGCGAAATATTCGATTGACCCTCGAAGTAAACAACCCAGG
TGCTCAAAAATGAAGCTAACAAAGTTAGATTAATCGGTGTCTACGAATTA
TCTGGAAACACAAGCATTTCCCGTCATCTAACTCAAACTGCCCAACTCGA
AAAATCAACAATATTTTTGCATCGGGCCAAAGGTGCATTAAAACCGGAGC
CTCAAGTCTCGGGCGGCAGCTTCAAAGCAAAAACAGATAAAATTAAGCTT
AAGCAACAGCATCAAACACTTCGACACCCACTCGAAAAAAAAAAGCTTAA
GACATTCCAAAAAAAGTAGCCAGCAAAGCGGCTAAAAAAAAATAAATAAG
ATAAAACCAAAACCCAAAACGAAACAGTAGGCAGCTATCCAACCATCTTG
GGTGACAAACACTTGACCGGCTTTTTGGAGGGCGACAGGTTTAAATCAAA
TCTGGAGCAGCCGCAGGATATGGAAGTTGATGCGCCAACAACGCAGGAAA
CCAGTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCAT
CAGATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCA
TTTGCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGAT
CCGGAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGAT
AGTAGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCAT
ACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCA
ACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAG
AGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCAT
TTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTG
TGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAAT
GTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCA
ACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCAT
CCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAG
AAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACAT
CAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTA
GCCATTAATTAAATTGTTTTTTGGTCTATTAACTATTCATAGCATTATTA
TCAAACCAAACGAAATACATCACCAAGCTAGATGAAACGAATAATAAAGA
AAGCAGCATATACACCAGAAAAAAAAAAAAAAAAAAAAAA

LD01461.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1478 CG7945-RA 38..1454 1..1418 7050 99.9 Plus
CG7945.a 1460 CG7945.a 16..1371 62..1418 6745 99.9 Plus
CG7945-RC 3575 CG7945-RC 1609..2240 787..1418 3160 100 Plus
CG7945-RC 3575 CG7945-RC 645..1145 266..767 2470 99.8 Plus
CG7945-RC 3575 CG7945-RC 12..280 1..269 1345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15512906..15513406 767..266 2460 99.8 Minus
chr3L 24539361 chr3L 15511647..15512135 1418..930 2445 100 Minus
chr3L 24539361 chr3L 15513771..15514039 269..1 1345 100 Minus
chr3L 24539361 chr3L 15512298..15512442 931..787 725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15522968..15523468 767..266 2460 99.8 Minus
3L 28110227 3L 15521709..15522197 1418..930 2445 100 Minus
3L 28110227 3L 15523833..15524101 269..1 1345 100 Minus
3L 28110227 3L 15522360..15522504 931..787 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15516068..15516568 767..266 2470 99.8 Minus
3L 28103327 3L 15514809..15515297 1418..930 2445 100 Minus
3L 28103327 3L 15516933..15517201 269..1 1345 100 Minus
3L 28103327 3L 15515460..15515604 931..787 725 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:40:22 has no hits.

LD01461.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:41:00 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15512298..15512440 789..931 100 <- Minus
chr3L 15512498..15512518 768..788 100 <- Minus
chr3L 15511647..15512133 932..1418 100 <- Minus
chr3L 15512906..15513402 270..767 99 <- Minus
chr3L 15513771..15514039 1..269 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:29:42 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 520..1308 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:34 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 520..1308 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:37 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 520..1308 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:19 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 520..1308 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:27 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 520..1308 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:24 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..1408 10..1418 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:34 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..1406 10..1416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:37 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 37..1451 1..1416 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:19 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..1408 10..1418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:27 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 37..1451 1..1416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:00 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15521709..15522195 932..1418 100 <- Minus
3L 15522360..15522502 789..931 100 <- Minus
3L 15522560..15522580 768..788 100 <- Minus
3L 15522968..15523464 270..767 99 <- Minus
3L 15523833..15524101 1..269 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:00 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15521709..15522195 932..1418 100 <- Minus
3L 15522360..15522502 789..931 100 <- Minus
3L 15522560..15522580 768..788 100 <- Minus
3L 15522968..15523464 270..767 99 <- Minus
3L 15523833..15524101 1..269 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:00 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15521709..15522195 932..1418 100 <- Minus
3L 15522360..15522502 789..931 100 <- Minus
3L 15522560..15522580 768..788 100 <- Minus
3L 15522968..15523464 270..767 99 <- Minus
3L 15523833..15524101 1..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:37 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514809..15515295 932..1418 100 <- Minus
arm_3L 15515460..15515602 789..931 100 <- Minus
arm_3L 15515660..15515680 768..788 100 <- Minus
arm_3L 15516068..15516564 270..767 99 <- Minus
arm_3L 15516933..15517201 1..269 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:12 Download gff for LD01461.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15516933..15517201 1..269 100   Minus
3L 15514809..15515295 932..1418 100 <- Minus
3L 15515460..15515602 789..931 100 <- Minus
3L 15515660..15515680 768..788 100 <- Minus
3L 15516068..15516564 270..767 99 <- Minus

LD01461.hyp Sequence

Translation from 519 to 1307

> LD01461.hyp
MEVDAPTTQETSDTHHHHHSTYHQQLHQISPSDYHSEASMNFDHLQDLRA
DAMASSSPSGSGGGGNGGNSSYGLVDDSRALDRPFNASERFVTILDSLDA
RVEKLRKDALNLQEKKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRV
SSRLATVELRVRTVRDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYL
NACCSSSMDPSGHMDTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQA
LMAYLNKQTVSH*

LD01461.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 262 CG7945-PA 1..262 1..262 1346 100 Plus
CG7945-PB 248 CG7945-PB 68..248 82..262 910 100 Plus

LD01461.pep Sequence

Translation from 519 to 1307

> LD01461.pep
MEVDAPTTQETSDTHHHHHSTYHQQLHQISPSDYHSEASMNFDHLQDLRA
DAMASSSPSGSGGGGNGGNSSYGLVDDSRALDRPFNASERFVTILDSLDA
RVEKLRKDALNLQEKKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRV
SSRLATVELRVRTVRDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYL
NACCSSSMDPSGHMDTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQA
LMAYLNKQTVSH*

LD01461.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10728-PA 353 GF10728-PA 87..353 1..262 1024 79 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13543-PA 344 GG13543-PA 77..344 1..262 1171 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16818-PA 367 GH16818-PA 143..367 34..262 921 81.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 262 CG7945-PA 1..262 1..262 1346 100 Plus
CG7945-PB 248 CG7945-PB 68..248 82..262 910 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12223-PA 259 GI12223-PA 1..258 1..261 993 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25595-PA 331 GL25595-PA 78..331 1..262 979 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20709-PA 331 GA20709-PA 78..331 1..262 979 74.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24486-PA 361 GM24486-PA 96..361 1..262 1162 89.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12558-PA 246 GD12558-PA 66..246 82..262 917 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11453-PA 332 GJ11453-PA 81..332 1..262 946 72.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10518-PA 269 GK10518-PA 1..269 1..262 941 71.6 Plus
Dwil\GK18090-PA 215 GK18090-PA 30..214 77..261 707 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22844-PA 262 GE22844-PA 1..262 1..262 1194 91.6 Plus
Dyak\GE19846-PA 262 GE19846-PA 1..262 1..262 1194 91.6 Plus