Clone LD01463 Report

Search the DGRC for LD01463

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:14
Well:63
Vector:pBS SK-
Associated Gene/TranscriptCG31529-RA
Protein status:LD01463.pep: validated full length
Preliminary Size:2326
Sequenced Size:2313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31529 2001-10-10 Blastp of sequenced clone
CG31529 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

LD01463.complete Sequence

2313 bp (2313 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061045

> LD01463.complete
CGTGCACAGCTGAAAAGTAAAATAATGCAAACGGCTGTATTTTTTATATA
CTCGGGGTCCACTGGTACATACAAATTGAAAAGGTTGCTGCTGTTTATAT
AACTTCGAATATTATCACGTTGCGTTAGACCGAAATTGAAAGAAATCGGA
TTACTCAGTGGCCAGGGCATGCAAATCGCTCAAATTGTGTATGCATTAAG
TTTTACTCCTCGCTTTGATTTTGTTATATTGTTGTACATACTAAAACTTA
TTTGTTCTTCACCTTCTTCGGTAAGCCATTGTGTGTGTGAGTGTGTACGT
CGTCATGCGCTTGTCCTCGTTCTCTCTCTTTCGCGCACATGCAGCGCCGT
GTGCTCCCTTTTGTGTTTCTTTTCGTTTCGTCCTATTCCTCAATCGACTT
TTCATTTTTAGATCTTAATATCGCTCTTAGTCTATGAAATCAAGTGAAAT
AAAATGCAAAATATTCAGTTAAGCGAACAATTTTCACTTCCAATTTCTGC
AGTGAAAAATGCATCAAAGTGTGTGTATAACTGCATATAAAAGCCGTGCA
CATGTGCCTAAACGTGTGTATATGCTCCTTTGTGCATATAAGGCGTTGTA
AAAGGCTGAAAATATGTGGTATAATTTACTTGGCTTTCCGTTGAAGTTAT
CCCCCCTCTGGCAACAATGCTTTATGCTGACCTTGCTTCTAAAAACTCAA
GTATTTCCCATGTGGCTAAAAAACCTTCGGAGTTAAATTGTTGCATGTCT
AGTTCCACCAACACCCACTAGATAGGGTTGCCAGGTGGCATTCCTATTGC
GTTCTTATGTCCGTTTATTCAACTACGTAATTGTTACTTTATTGGATTCG
AAGTTTTACTGAGTAATAAACTGCGCCAAATTAAACAGATCATATTCTTT
ATTTAAAAATATTTACAATTTAAAAAAAAAATTTATATATTTTCTGAAAA
TCTAAAACGTCAATTAACATTAGTAGAGGAATGATAAGAATTATAAAATG
GGCTATAAGTTCGGAAACATATCAAACACATGAAAAGTTACTTTTATATT
CGATTTTTTACCACTGTCTAAAGTTGGGCCATCTCCCTCACACACTCAGC
TGTGCGTAGGCAGGTTTCGTAACACGTTGAAAAGAGACAAAAAAAATGTC
GACATGGCGCTGGAACGGAAAATGGGGAATACAGAAAACTCGCTAGGGCA
GCACTATTGGGACCAGCTTCGATATGCGCTTGACTGCTTCTTTCCAACGA
TATTTAAATAAGTTACAAACAATACCAACAGCACAGCACGCACAATGCAT
AACGAACAGGGGAAATTAAGAAGGTTTTCAAAGGGGGAGGTAGGGCACAG
CCACATGAGCACACGAGTTGTTATCAATTATGCTCGGGCCAGGGTTGTCA
TACTGTCGTGTAGTTGACAAACATTTGTACATAAGCGTCTGACAGAGTTG
CCCTCAGCGGCAATAGACTTTTAGCGCAGACTTAACTTATATTTTTAAAC
TAATATATTTGAGCTCCATTTTATTAAGTATAAAACTTCGTTACAAATAT
AGTTTTTTAAGTATTTATCTAATTGAATTTGGAGCAAGCTGTTTAGATTC
AACAATGGCACCTATTTGTTTCAAACAAACTGTGTACTTGTGTTGCGGAT
ATAGTTATCGATTTGGATAGTTCTGGACAAATATGTTGCATATCTATTGA
AAATGAATTTACATTTGTATACTCGTAAAAAATGGGGATGCGAAATGTAA
TTTAACTGCACTAAAGTTGATGAGTCTGCCCTGTTTAAGACCCTTAACGT
TTCACGTTTTTTACTTCTAATAAAAGGCAACAACAACCGATGCCAGCAAC
CACAAAGCAATCGCCATATGTTCGAGCTGCCACACGCAAAGCAAAACGCT
TGGCACACACACATGTACAGTATACTCACACATCCACACGCGTGCATGAA
GGCGCTTCCATTTGTGGCCTCGCTTATTATTTTTCTCGTCAGCGCTTTTC
GGTGTGAAAAACTTGTGGGGCAGAGATACGAGTAGAGACTAATAAATGTA
GATAGATTGTATTTTCTGGGTTGGGTGTTTGGAACGAGTGCACTAACTAT
CGTGGTGAGGCACTTGCCGATTTCGGCAAATGTGCTCTAAATCATAGGTT
CTACATTCATACACGTATTCAAGACGAGCATACCTAAACGATTTCATTCT
GCGGTTTTGCTTATTCTGCCCACGGATATTAAAATGCGATCTCAGAAATT
ATCTTTAAAGATTTTAAGATATTAAAAATTAATGTACAGAAAAAAAAAAA
AAAAAAAAAAAAA

LD01463.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 20:09:42 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 629852..632140 2289..1 11445 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4804151..4806444 2294..1 11470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4544982..4547275 2294..1 11470 100 Minus
Blast to na_te.dros performed 2019-03-16 23:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 725..872 1056..904 139 61.8 Minus
transib1 2167 transib1 TRANSIB1 2167bp 1875..1997 1025..904 134 60.8 Minus
G7 1192 G7 G7 1192bp 1116..1172 937..881 114 66.7 Minus

LD01463.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:16:09 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 629852..632140 1..2289 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 17:41:23 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:16:20 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:47:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:16:09 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4804156..4806444 1..2289 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:16:09 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4804156..4806444 1..2289 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:16:09 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4804156..4806444 1..2289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:23 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 629878..632166 1..2289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:23 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 629878..632166 1..2289 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:13 Download gff for LD01463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4544987..4547275 1..2289 100   Minus

LD01463.pep Sequence

Translation from 168 to 410

> LD01463.pep
MQIAQIVYALSFTPRFDFVILLYILKLICSSPSSVSHCVCECVRRHALVL
VLSLSRTCSAVCSLLCFFSFRPIPQSTFHF*

LD01463.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16495-PA 101 GG16495-PA 1..78 1..70 156 55.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19524-PA 88 GM19524-PA 1..69 1..65 188 84.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17773-PA 88 GD17773-PA 1..69 1..65 233 85.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18065-PA 128 GE18065-PA 1..83 1..80 240 69.9 Plus

LD01463.hyp Sequence

Translation from 168 to 410

> LD01463.hyp
MQIAQIVYALSFTPRFDFVILLYILKLICSSPSSVSHCVCECVRRHALVL
VLSLSRTCSAVCSLLCFFSFRPIPQSTFHF*
Sequence LD01463.hyp has no blast hits.