Clone LD01470 Report

Search the DGRC for LD01470

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:14
Well:70
Vector:pBS SK-
Associated Gene/Transcriptspn-F-RA
Protein status:LD01470.pep: gold
Preliminary Size:1571
Sequenced Size:1456

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12114 2001-01-01 Release 2 assignment
CG12114 2001-10-10 Blastp of sequenced clone
CG12114 2003-01-01 Sim4 clustering to Release 3
spn-F 2008-04-29 Release 5.5 accounting
spn-F 2008-08-15 Release 5.9 accounting
spn-F 2008-12-18 5.12 accounting

Clone Sequence Records

LD01470.complete Sequence

1456 bp (1456 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061046

> LD01470.complete
ACGCAATAAAAATTTGGAAAATCAAACATCTACAGGAAAACGTATATTTT
TGGGATCAAGTGCCAAGGAACTCCAATACTGCAGAATGGAGGCATCTGCT
GCCAAAATCACGCCTATGGCCAGTTCCATGTCCGCTTCCGGATCCACAAA
CTCCCCCTCCAGTGAAAAAATGAACTACGCACTGCAAGTGGCGCTGCAGA
CGATCAAGGAGCGGTGCATCCAGCTGCAGCGCCGCGTGGCCAGCATGGAG
GAGGAGAACCAGCAGCTAAGGGAGGCCTCCAGCAGGTCGGAAGGTGCTCC
AAGGGCAAACGAAATCGGGGTCACTGGGGACGTCCTCTCTCTGAAAGCAC
AGGTCTCTGAGCTGCAGCGCCAAAAGGAGCAGCTGGAGGAGCACATTGGC
ATGGTATCCAACGAGAACAGACGGCTCTGGTCCCGCCTATCGCAGATCTC
CAAGGATCAGCAGCTGAACGCACTGCCCAGCTCAACAGACTCGCGAGCCC
AGCAAAACCAGAACCTGGTGCGCTCCAAGACCTTTACGCAGCACTCCCCC
AATCCTCACCTTCGCCAAAAGATGCTCTCCGACGGCATTAAGGATCTCAG
TCTGGAGGAAATAGCCCTGGATGACTTCGGTGCCAGCAGTGAGGAACTAG
GTTACCCCTACAACCTGCAAAAGGTGGAGGAAACCACTAGTGAACCAGAT
GCCAATGTGGATGCCAAAAGATGTTTGGATGGACTGCAGGAGCTGAGGCG
AGAGGCCATGAAGCAGCAGCAGGAGCTCAGATCGGTAATGACTCTGCTAG
AAAATCGCATAGCACTCAAGCCCTGTCCGGAATGTGCCCAGAAAACCATC
AAAAAACCGGAGATGGCCGACAAAAGTCTGGAAACGGACGACAGCCTGAC
CAGCGAGCTGAAGAACTATGAGAGCCAACACAATGGACACAATGGCACGC
CGCCCAGCCAGAGAATTAACATAATACAAGAGAAAATCAAAGCAGATGCA
GCCGACGCAATGGAGAAGACCTGCCCTATGTGCGGCAAGCAGTACTCCAG
CCAAGTGTCCTTCAATGCGTTCCGCGAGCACGTCGAGATGCACTTCATCG
ACGATGCACTGGAACTGGAGTCGGAGAACAGCATTGAGCGCCAGTTTGAG
TTCGTTTCCCATGCTGTGGGTGACTTCTGACCCAGTAGGCGCATTTATTT
CGCCACCGAACTCTGACCTGACCGGAGAAATCCAAGGATTAAGGAGCAGT
TTGACTGCGCAGGAGCCGCTTGTTACGTTTCTATTGATAAGACGTTAGGG
CGATCATGTATCAAAACTATACAACATTGAACTTTAAGAAAAAATATATA
TATATTGTATTATAATTGCGGAGAGTGCATGAATATATAGATGTAAGTGA
CCGAATACGAAATACAGTTTAAATGAAAAGCCTGAAAAAAAAAAAAAAAA
AAAAAA

LD01470.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RA 1513 spn-F-RA 68..1505 1..1438 7190 100 Plus
spn-F.a 1460 spn-F.a 17..1457 1..1438 7135 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27077533..27078344 1..812 4045 99.9 Plus
chr3R 27901430 chr3R 27078411..27079034 811..1434 3015 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255158..31255969 1..812 4060 100 Plus
3R 32079331 3R 31256036..31256663 811..1438 3140 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30995989..30996800 1..812 4060 100 Plus
3R 31820162 3R 30996867..30997494 811..1438 3140 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:12:45 has no hits.

LD01470.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:13:33 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27077533..27078344 1..812 99 -> Plus
chr3R 27078413..27079034 813..1434 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:29:44 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 1..1095 86..1180 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:36 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 1..1095 86..1180 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RB 1..1131 86..1216 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:21 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 1..1095 86..1180 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:02 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RB 1..1131 86..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:27 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 17..1450 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:36 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 17..1450 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 32..1465 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:22 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 17..1450 1..1434 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:02 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 32..1465 1..1434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:33 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31255158..31255969 1..812 100 -> Plus
3R 31256038..31256659 813..1434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:33 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31255158..31255969 1..812 100 -> Plus
3R 31256038..31256659 813..1434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:33 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31255158..31255969 1..812 100 -> Plus
3R 31256038..31256659 813..1434 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:43 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080880..27081691 1..812 100 -> Plus
arm_3R 27081760..27082381 813..1434 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:15 Download gff for LD01470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30995989..30996800 1..812 100 -> Plus
3R 30996869..30997490 813..1434 100   Plus

LD01470.hyp Sequence

Translation from 0 to 1179

> LD01470.hyp
RNKNLENQTSTGKRIFLGSSAKELQYCRMEASAAKITPMASSMSASGSTN
SPSSEKMNYALQVALQTIKERCIQLQRRVASMEEENQQLREASSRSEGAP
RANEIGVTGDVLSLKAQVSELQRQKEQLEEHIGMVSNENRRLWSRLSQIS
KDQQLNALPSSTDSRAQQNQNLVRSKTFTQHSPNPHLRQKMLSDGIKDLS
LEEIALDDFGASSEELGYPYNLQKVEETTSEPDANVDAKRCLDGLQELRR
EAMKQQQELRSVMTLLENRIALKPCPECAQKTIKKPEMADKSLETDDSLT
SELKNYESQHNGHNGTPPSQRINIIQEKIKADAADAMEKTCPMCGKQYSS
QVSFNAFREHVEMHFIDDALELESENSIERQFEFVSHAVGDF*

LD01470.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-PA 364 CG12114-PA 1..364 29..392 1838 100 Plus
spn-F-PB 376 CG12114-PB 1..364 29..392 1838 100 Plus

LD01470.pep Sequence

Translation from 85 to 1179

> LD01470.pep
MEASAAKITPMASSMSASGSTNSPSSEKMNYALQVALQTIKERCIQLQRR
VASMEEENQQLREASSRSEGAPRANEIGVTGDVLSLKAQVSELQRQKEQL
EEHIGMVSNENRRLWSRLSQISKDQQLNALPSSTDSRAQQNQNLVRSKTF
TQHSPNPHLRQKMLSDGIKDLSLEEIALDDFGASSEELGYPYNLQKVEET
TSEPDANVDAKRCLDGLQELRREAMKQQQELRSVMTLLENRIALKPCPEC
AQKTIKKPEMADKSLETDDSLTSELKNYESQHNGHNGTPPSQRINIIQEK
IKADAADAMEKTCPMCGKQYSSQVSFNAFREHVEMHFIDDALELESENSI
ERQFEFVSHAVGDF*

LD01470.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17776-PA 349 GF17776-PA 1..349 1..364 1402 75.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11799-PA 364 GG11799-PA 1..364 1..364 1847 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18010-PA 366 GH18010-PA 1..366 1..364 1039 57.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-PB 376 CG12114-PB 1..364 1..364 1838 100 Plus
spn-F-PA 364 CG12114-PA 1..364 1..364 1838 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23610-PA 349 GI23610-PA 1..349 29..364 1029 60.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13737-PA 374 GL13737-PA 1..374 1..364 1341 71.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11408-PA 374 GA11408-PA 1..374 1..364 1317 71.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12929-PA 243 GM12929-PA 1..214 1..214 1003 94.9 Plus
Dsec\GM12930-PA 105 GM12930-PA 1..105 260..364 555 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21567-PA 364 GD21567-PA 1..364 1..364 1815 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23583-PA 321 GJ23583-PA 1..321 54..364 868 57.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10870-PA 351 GK10870-PA 4..351 21..364 1211 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10926-PA 364 GE10926-PA 1..364 1..364 1786 94.2 Plus