![]() | BDGP Sequence Production Resources |
Search the DGRC for LD01470
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 14 |
Well: | 70 |
Vector: | pBS SK- |
Associated Gene/Transcript | spn-F-RA |
Protein status: | LD01470.pep: gold |
Preliminary Size: | 1571 |
Sequenced Size: | 1456 |
Gene | Date | Evidence |
---|---|---|
CG12114 | 2001-01-01 | Release 2 assignment |
CG12114 | 2001-10-10 | Blastp of sequenced clone |
CG12114 | 2003-01-01 | Sim4 clustering to Release 3 |
spn-F | 2008-04-29 | Release 5.5 accounting |
spn-F | 2008-08-15 | Release 5.9 accounting |
spn-F | 2008-12-18 | 5.12 accounting |
1456 bp (1456 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061046
> LD01470.complete ACGCAATAAAAATTTGGAAAATCAAACATCTACAGGAAAACGTATATTTT TGGGATCAAGTGCCAAGGAACTCCAATACTGCAGAATGGAGGCATCTGCT GCCAAAATCACGCCTATGGCCAGTTCCATGTCCGCTTCCGGATCCACAAA CTCCCCCTCCAGTGAAAAAATGAACTACGCACTGCAAGTGGCGCTGCAGA CGATCAAGGAGCGGTGCATCCAGCTGCAGCGCCGCGTGGCCAGCATGGAG GAGGAGAACCAGCAGCTAAGGGAGGCCTCCAGCAGGTCGGAAGGTGCTCC AAGGGCAAACGAAATCGGGGTCACTGGGGACGTCCTCTCTCTGAAAGCAC AGGTCTCTGAGCTGCAGCGCCAAAAGGAGCAGCTGGAGGAGCACATTGGC ATGGTATCCAACGAGAACAGACGGCTCTGGTCCCGCCTATCGCAGATCTC CAAGGATCAGCAGCTGAACGCACTGCCCAGCTCAACAGACTCGCGAGCCC AGCAAAACCAGAACCTGGTGCGCTCCAAGACCTTTACGCAGCACTCCCCC AATCCTCACCTTCGCCAAAAGATGCTCTCCGACGGCATTAAGGATCTCAG TCTGGAGGAAATAGCCCTGGATGACTTCGGTGCCAGCAGTGAGGAACTAG GTTACCCCTACAACCTGCAAAAGGTGGAGGAAACCACTAGTGAACCAGAT GCCAATGTGGATGCCAAAAGATGTTTGGATGGACTGCAGGAGCTGAGGCG AGAGGCCATGAAGCAGCAGCAGGAGCTCAGATCGGTAATGACTCTGCTAG AAAATCGCATAGCACTCAAGCCCTGTCCGGAATGTGCCCAGAAAACCATC AAAAAACCGGAGATGGCCGACAAAAGTCTGGAAACGGACGACAGCCTGAC CAGCGAGCTGAAGAACTATGAGAGCCAACACAATGGACACAATGGCACGC CGCCCAGCCAGAGAATTAACATAATACAAGAGAAAATCAAAGCAGATGCA GCCGACGCAATGGAGAAGACCTGCCCTATGTGCGGCAAGCAGTACTCCAG CCAAGTGTCCTTCAATGCGTTCCGCGAGCACGTCGAGATGCACTTCATCG ACGATGCACTGGAACTGGAGTCGGAGAACAGCATTGAGCGCCAGTTTGAG TTCGTTTCCCATGCTGTGGGTGACTTCTGACCCAGTAGGCGCATTTATTT CGCCACCGAACTCTGACCTGACCGGAGAAATCCAAGGATTAAGGAGCAGT TTGACTGCGCAGGAGCCGCTTGTTACGTTTCTATTGATAAGACGTTAGGG CGATCATGTATCAAAACTATACAACATTGAACTTTAAGAAAAAATATATA TATATTGTATTATAATTGCGGAGAGTGCATGAATATATAGATGTAAGTGA CCGAATACGAAATACAGTTTAAATGAAAAGCCTGAAAAAAAAAAAAAAAA AAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27077533..27078344 | 1..812 | 99 | -> | Plus |
chr3R | 27078413..27079034 | 813..1434 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 1..1095 | 86..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 1..1095 | 86..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RB | 1..1131 | 86..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 1..1095 | 86..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RB | 1..1131 | 86..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 17..1450 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 17..1450 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 32..1465 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 17..1450 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-F-RA | 32..1465 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31255158..31255969 | 1..812 | 100 | -> | Plus |
3R | 31256038..31256659 | 813..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31255158..31255969 | 1..812 | 100 | -> | Plus |
3R | 31256038..31256659 | 813..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31255158..31255969 | 1..812 | 100 | -> | Plus |
3R | 31256038..31256659 | 813..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27080880..27081691 | 1..812 | 100 | -> | Plus |
arm_3R | 27081760..27082381 | 813..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30995989..30996800 | 1..812 | 100 | -> | Plus |
3R | 30996869..30997490 | 813..1434 | 100 | Plus |
Translation from 0 to 1179
> LD01470.hyp RNKNLENQTSTGKRIFLGSSAKELQYCRMEASAAKITPMASSMSASGSTN SPSSEKMNYALQVALQTIKERCIQLQRRVASMEEENQQLREASSRSEGAP RANEIGVTGDVLSLKAQVSELQRQKEQLEEHIGMVSNENRRLWSRLSQIS KDQQLNALPSSTDSRAQQNQNLVRSKTFTQHSPNPHLRQKMLSDGIKDLS LEEIALDDFGASSEELGYPYNLQKVEETTSEPDANVDAKRCLDGLQELRR EAMKQQQELRSVMTLLENRIALKPCPECAQKTIKKPEMADKSLETDDSLT SELKNYESQHNGHNGTPPSQRINIIQEKIKADAADAMEKTCPMCGKQYSS QVSFNAFREHVEMHFIDDALELESENSIERQFEFVSHAVGDF*
Translation from 85 to 1179
> LD01470.pep MEASAAKITPMASSMSASGSTNSPSSEKMNYALQVALQTIKERCIQLQRR VASMEEENQQLREASSRSEGAPRANEIGVTGDVLSLKAQVSELQRQKEQL EEHIGMVSNENRRLWSRLSQISKDQQLNALPSSTDSRAQQNQNLVRSKTF TQHSPNPHLRQKMLSDGIKDLSLEEIALDDFGASSEELGYPYNLQKVEET TSEPDANVDAKRCLDGLQELRREAMKQQQELRSVMTLLENRIALKPCPEC AQKTIKKPEMADKSLETDDSLTSELKNYESQHNGHNGTPPSQRINIIQEK IKADAADAMEKTCPMCGKQYSSQVSFNAFREHVEMHFIDDALELESENSI ERQFEFVSHAVGDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17776-PA | 349 | GF17776-PA | 1..349 | 1..364 | 1402 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11799-PA | 364 | GG11799-PA | 1..364 | 1..364 | 1847 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18010-PA | 366 | GH18010-PA | 1..366 | 1..364 | 1039 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spn-F-PB | 376 | CG12114-PB | 1..364 | 1..364 | 1838 | 100 | Plus |
spn-F-PA | 364 | CG12114-PA | 1..364 | 1..364 | 1838 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23610-PA | 349 | GI23610-PA | 1..349 | 29..364 | 1029 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13737-PA | 374 | GL13737-PA | 1..374 | 1..364 | 1341 | 71.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11408-PA | 374 | GA11408-PA | 1..374 | 1..364 | 1317 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12929-PA | 243 | GM12929-PA | 1..214 | 1..214 | 1003 | 94.9 | Plus |
Dsec\GM12930-PA | 105 | GM12930-PA | 1..105 | 260..364 | 555 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21567-PA | 364 | GD21567-PA | 1..364 | 1..364 | 1815 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23583-PA | 321 | GJ23583-PA | 1..321 | 54..364 | 868 | 57.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10870-PA | 351 | GK10870-PA | 4..351 | 21..364 | 1211 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10926-PA | 364 | GE10926-PA | 1..364 | 1..364 | 1786 | 94.2 | Plus |