Clone LD01482 Report

Search the DGRC for LD01482

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:14
Well:82
Vector:pBS SK-
Associated Gene/TranscriptCG10068-RA
Protein status:LD01482.pep: gold
Preliminary Size:1788
Sequenced Size:1650

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10068 2001-01-01 Release 2 assignment
CG10068 2001-10-10 Blastp of sequenced clone
CG10068 2003-01-01 Sim4 clustering to Release 3
CG10068 2008-04-29 Release 5.5 accounting
CG10068 2008-08-15 Release 5.9 accounting
CG10068 2008-12-18 5.12 accounting

Clone Sequence Records

LD01482.complete Sequence

1650 bp (1650 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061047

> LD01482.complete
ATTTGTTATTGTTGCGAGTCAATCATAAAAGCTTTCTAAAGACAACTCTC
AAAAGTGCAATATAGTAGATAGAAACATAAGGCTGTGATCAAAAGCCAAT
CCTGATGTGTTGCCCTGGCAACCGGGCGCAAACAAACGAAATCGGGAAAT
CTAATTAGTTCTCTTCGCCGCCTTAGTAAAATGTTTATTCTCGACCGAAT
ACTGCCTTTTATTTTTAGCTATATAAGGCCCTTTATAAAGTGGTTCCTGC
ACGCCTTCACCAGGCTCTCGGAGCTCCAGAGGATTTGCTATGGAGCGAAG
GCCGGAGCCAGCCGAACCAGCCAGGTGGAAAGGTCCCTCACATTGTCCAA
AAGGCCGCAGATACGACGACTTGTACTTGACCTTGATGAGGCGGCGCCAT
ATGTGAGCAACGCGGAGCTGCTGGATTTCGCTCCTCGCGCTGCTCGCATT
GTGATGCAGGCGAAACGCATCAAGAACAATGTCCACCCGGATTTTGCTCG
GCTCTTCGGCACATGCGTGACGAGTATCTGGGGCTACCGCAGACTGATGC
ATCAGGTGGAACAGCTGCGGGCGGAGAAATACGACTCGGATAACCTCGAC
CACGAGCAAAAGCTGTTGCGATTGTGGCAATTGCTGATGCCAGACACTCC
CCTCACCGGTCGCGTGACCAAACAGTGGCAGGACATCGGCTTCCAGGGCG
ACGATCCGAAGACGGACTTTCGGGGAATGGGCATGCTCGGGCTAGAGAAC
CTTCTCTACTTTGCAACTGCCTATAACGACGCCGCCAAACATGTCCTGCT
GCACTCGATGCATCCCACCCTGGGTTACACCTACGCCATTGTCGGCATTA
ACCTCACCTCCATGGCCTTCAATCTAGTGAAAACGGGCGCCGCCAAAACC
CACTTCTACAATTTGGTGGTGCAGCACAGACAGGACTTTAGCACCGTGGA
GGATTTCCACAAGTTGTACTGCTATCTGTTCTTCGAGTTTGACCGCTTTT
GGATGGAGAGCGACCCACGAAACATTATGGACTTCCGCGAGATTTACCAG
TCATTTGAAATTACAAAACTAGAGGCCTTGCACAATGATAGCACTATTTT
TAAGACCAATTTGGTTGTAGAATCCGTCTAAAAACACGAATAGGTCAATT
AATGTGAAAATGAATTTGTATCTCGCTGTATCTGAATAATTTCTAACTCT
GACGATATTGGGAATTGATTGAATCAGATCAGGCTGACCATTTTTGTAAA
TACATGTTTAGAGTGGGGCTAAATAAAATAATTATCTTGTCATTTTTCAA
TTTAAATTATCAATTCATTTCGCTTCTAAATCACTTTGTAATAAAAAAAA
AAGGAATCCTAAAATAAGTATCCAAATACGACAAGCCCTTTTAATTTTTG
TATAAATGCAGATTTTATGCGTTTATTTGAGAGCCATATATAATGTATAT
TTGTATATGTATTCATATATATTTGAATGCAAGTATGTAAATCGTTAAAC
TAAGCCTGGAATGTCACACAATAATACTTTAAATTCAAGTCGGAGATTGC
CCACTGAGACAGAATAAATAATAATTTAAATATCACGCAAAAGCATAAAA
ACTAAACGAAATAAAATCAGTAGAGATTGCACAAAAAAAAAAAAAAAAAA

LD01482.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10068-RA 1674 CG10068-RA 43..1674 1..1632 8145 99.9 Plus
CG10098-RA 1624 CG10098-RA 1368..1624 1639..1383 1270 99.6 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2952322..2953524 1632..430 5890 99.7 Minus
chr3R 27901430 chr3R 2953624..2954053 430..1 2150 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7126264..7127473 1639..430 6020 99.8 Minus
3R 32079331 3R 7127573..7128002 430..1 2150 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6867095..6868304 1639..430 6020 99.8 Minus
3R 31820162 3R 6868404..6868833 430..1 2150 100 Minus
Blast to na_te.dros performed 2019-03-16 12:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 5037..5133 1273..1367 129 63.6 Plus

LD01482.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:55:18 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2952322..2953523 431..1632 97 <- Minus
chr3R 2953624..2954053 1..430 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:29:46 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 1..951 181..1131 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:37 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 1..951 181..1131 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:19:06 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 1..951 181..1131 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:23 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 1..951 181..1131 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:23 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 1..951 181..1131 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:29 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 28..1659 1..1632 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:37 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 28..1659 1..1632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:19:06 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 26..1657 1..1632 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:23 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 28..1659 1..1632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:23 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
CG10068-RA 26..1657 1..1632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:55:18 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7126271..7127472 431..1632 99 <- Minus
3R 7127573..7128002 1..430 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:55:18 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7126271..7127472 431..1632 99 <- Minus
3R 7127573..7128002 1..430 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:55:18 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7126271..7127472 431..1632 99 <- Minus
3R 7127573..7128002 1..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:19:06 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2951993..2953194 431..1632 99 <- Minus
arm_3R 2953295..2953724 1..430 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:16 Download gff for LD01482.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6867102..6868303 431..1632 99 <- Minus
3R 6868404..6868833 1..430 100   Minus

LD01482.hyp Sequence

Translation from 180 to 1130

> LD01482.hyp
MFILDRILPFIFSYIRPFIKWFLHAFTRLSELQRICYGAKAGASRTSQVE
RSLTLSKRPQIRRLVLDLDEAAPYVSNAELLDFAPRAARIVMQAKRIKNN
VHPDFARLFGTCVTSIWGYRRLMHQVEQLRAEKYDSDNLDHEQKLLRLWQ
LLMPDTPLTGRVTKQWQDIGFQGDDPKTDFRGMGMLGLENLLYFATAYND
AAKHVLLHSMHPTLGYTYAIVGINLTSMAFNLVKTGAAKTHFYNLVVQHR
QDFSTVEDFHKLYCYLFFEFDRFWMESDPRNIMDFREIYQSFEITKLEAL
HNDSTIFKTNLVVESV*

LD01482.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10068-PA 316 CG10068-PA 1..316 1..316 1662 100 Plus

LD01482.pep Sequence

Translation from 180 to 1130

> LD01482.pep
MFILDRILPFIFSYIRPFIKWFLHAFTRLSELQRICYGAKAGASRTSQVE
RSLTLSKRPQIRRLVLDLDEAAPYVSNAELLDFAPRAARIVMQAKRIKNN
VHPDFARLFGTCVTSIWGYRRLMHQVEQLRAEKYDSDNLDHEQKLLRLWQ
LLMPDTPLTGRVTKQWQDIGFQGDDPKTDFRGMGMLGLENLLYFATAYND
AAKHVLLHSMHPTLGYTYAIVGINLTSMAFNLVKTGAAKTHFYNLVVQHR
QDFSTVEDFHKLYCYLFFEFDRFWMESDPRNIMDFREIYQSFEITKLEAL
HNDSTIFKTNLVVESV*

LD01482.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17321-PA 316 GF17321-PA 1..316 1..316 1627 93.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10058-PA 316 GG10058-PA 1..316 1..316 1594 95.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18589-PA 316 GH18589-PA 1..316 1..316 1391 81 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10068-PA 316 CG10068-PA 1..316 1..316 1662 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24517-PA 316 GI24517-PA 1..316 1..316 1423 79.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12197-PA 316 GL12197-PA 1..316 1..316 1498 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10046-PA 316 GA10046-PA 1..316 1..316 1495 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10506-PA 316 GM10506-PA 1..316 1..316 1690 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19502-PA 316 GD19502-PA 1..316 1..316 1695 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22690-PA 316 GJ22690-PA 1..316 1..316 1465 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11232-PA 311 GK11232-PA 6..311 11..316 1333 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25815-PA 316 GE25815-PA 1..316 1..316 1643 95.6 Plus
Dyak\GE25816-PA 225 GE25816-PA 1..225 92..316 1200 96.9 Plus