Clone LD01582 Report

Search the DGRC for LD01582

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:15
Well:82
Vector:pBS SK-
Associated Gene/Transcriptmbm-RA
Protein status:LD01582.pep: gold
Preliminary Size:2151
Sequenced Size:2155

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11604 2001-01-01 Release 2 assignment
CG11604 2001-11-09 Blastp of sequenced clone
CG11604 2003-01-01 Sim4 clustering to Release 3
mbm 2008-04-29 Release 5.5 accounting
mbm 2008-08-15 Release 5.9 accounting
mbm 2008-12-18 5.12 accounting

Clone Sequence Records

LD01582.complete Sequence

2155 bp (2155 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069307

> LD01582.complete
GACATACTTCTTTGGCTTGAACTTGGTTTTGCCCCAGTCCTTGGTGCGGC
TCTGCAATTGACGTTCATGGCGATCATTATCTTCTGTTTTCTTCGGATTG
GTAGAATTCATAGCGTTGTTATTTGTGGTTAAACTGAATATCGTCCATCT
GACCATCTGAGGTGCCAGTTTGAGAAACTATCGAATCTAGCTATATATGT
TAAATCTTATAAAAACCTTCCATTGGTCACTTCACATTTTAGTCCATTAC
ATGTATTATGTCACATATTGTCACAGTATTATATATATATATTATATTAT
ATATAAGGTATTCAAACTTAATATACATATAATGAATAGCAGTTTTGGCT
TGAAAGAAGCCACTTCGGCAGTCCCACCAACAATCGGATCTTATCGATAA
CCCCAATCGGCTCAACACGTGCGCCGCAACTAGGCGGTTTTATAAATATT
AACAATTCCATAATGCACAACAGTGGAGGACAATCCGGCTGGAACCTTTC
AGGAGAGGAAAGAAAACCGTTTTCGAATTACGGCCGCAACAATCAGCAGA
GGCGCAGCAGTGGAGGCGGGGGAAGAGGCAGCCACAGCCAAAATCGCGCC
GCCAATGGAAACTGGCCAGACGCTGGATCGGAAGGTGGGCAGAATGGAAA
CGCGTTTAACAAGTTCAGAGATCCCCAACAGGAGCTGGATAATCATCAGC
CAAACAAGAGAGGGGGCCGAAGAAATAGAGGCGGTGGCGGAGGAGGTGGT
GGTTGGGGTGGCAGGCGAGGGAACCGCGGCAGAGATTCCAATAGGCGTGG
TGGCCGTAACAACTCGTGGCAACCTAAGGATCAGCATGTTAGTCCTGGCC
AAAGTAACATGCTGTACTTCGATAATGTGGGGGACTTTACCGAAGACCCA
CCTCTGCCTCGATCCTCGCCTGCTCCCTCCTCTCTCAGACAGGAGAGCCT
GCCACCTGTTACTTTCGCTGCGGACTTGACGCCACCACCACCTGTATCTG
TTGCACCACCTGATGTGGCTGTTACGCCAGAAGAACCTACTGTGCCGCTA
ATCAATATCAAGAAGGAGAAAGAAATGGAGCACAAGTCAAAAATAAAGCA
ATTTGTCAAAGCGGAGCCCAAATCTCCTAAAAAGAAGAAGGTTAACTCCT
CTAGGTCGTCATCTACTTCGGGAGAGGAGTCTGAACCCGAACCAGGGGAA
ATGGTAGTCAACACTAAGGCAGTGGTGGTGCCGTCCCCAAAAGCGAAGGC
CATCAAAACACCTGTAGCATCAACTCCGAAACCAAAGGCTGTAAAACCAG
TTTCGTCCTCCGACTCCTCAACTTCGGACAGCGACACCGATGATGAACAG
AGTCATCCGCCGGCAAAGAGTAAAAAGATGGAAAAGAACACCGAGGAGGA
TGTTGTCTGCATGGGCTCTCAGGAGCGCCAGTTTACCATTACCGATGAGG
AGGAAAGCACCGAACCTGAAGACGACAAGAAGGCCAGAAAGCAAAAAAAC
AAGGGTAAAACCGTGGATGTGTGTGGCATATGCGACAAGAAGGGCCACAC
CTCCTTCCAGTGTCAGATGATATGTCGTAATTGCTCCGGTAGTTATCATG
GTCTCAAAAACTGTCCAAACCCGCCCAATCTAAATATTGCCATCCAGTCG
TTTGTGGAGTTTGCCATGCAGCAAATGACTGCCTTTCATTGCGAGCAAGG
ATTTGGATTTCCTGCTGGCACAGTCACAGCTCCAGTTTCAGCAAAACCCA
AAAAGGACAAAAAGGCGTCAATAAAAAAGATAAAGAAGTCTTCACAGAAA
AGGATGAAGGTGGAGCCGAAAGATCATGACGAAGAAGATGACGAGGAAGA
TGACGACGAAGATGAAGATGACAGCAGCGAGAGCGATGACTCGGAGTCCA
GCGAAGAGCCTCACCCAGCTCCTGTGTCCAAACAGAAGCGGAAACGAGGC
ACCAAAGCCTCCGTATCGGCCGCAGCCAGTCTACCTCCTCAAGTGTTTCC
ATTTCCCCTTCTAGGCGCCCCGGGCGCCCCTTTTAACTCCATGATGTATT
CTTATAGAGCTCCGTTTAATTTTTCTAAATAGTTATAGCGTGAGTTAGTT
GTAAAGGAACGTGAAAGATAAATACATTTTCAATACCAAAAAAAAAAAAA
AAAAA

LD01582.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
mbm-RA 2159 mbm-RA 1..2139 1..2139 10695 100 Plus
CG11555-RA 812 CG11555-RA 1..142 142..1 710 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 272587..274129 1543..1 7685 99.9 Minus
chr2L 23010047 chr2L 271945..272541 2137..1541 2970 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 272554..274096 1543..1 7715 100 Minus
2L 23513712 2L 271910..272508 2139..1541 2995 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 272554..274096 1543..1 7715 100 Minus
2L 23513712 2L 271910..272508 2139..1541 2995 100 Minus
Blast to na_te.dros performed 2019-03-15 21:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1104..1185 324..239 123 64 Minus

LD01582.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:32:01 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 272257..272539 1543..1825 100 <- Minus
chr2L 271945..272191 1891..2137 99 == Minus
chr2L 272588..274129 1..1542 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:29:55 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1620 463..2082 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:52 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1620 463..2082 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:50:45 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1620 463..2082 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:42 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1620 463..2082 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:55 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1620 463..2082 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:10:47 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..2137 1..2137 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:52 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..2137 1..2137 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:50:45 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1756 382..2137 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:42 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..2137 1..2137 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:55 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
mbm-RA 1..1756 382..2137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:01 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271912..272506 1543..2137 100 <- Minus
2L 272555..274096 1..1542 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:01 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271912..272506 1543..2137 100 <- Minus
2L 272555..274096 1..1542 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:01 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271912..272506 1543..2137 100 <- Minus
2L 272555..274096 1..1542 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:50:45 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 271912..272506 1543..2137 100 <- Minus
arm_2L 272555..274096 1..1542 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:43 Download gff for LD01582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271912..272506 1543..2137 100 <- Minus
2L 272555..274096 1..1542 100   Minus

LD01582.pep Sequence

Translation from 462 to 2081

> LD01582.pep
MHNSGGQSGWNLSGEERKPFSNYGRNNQQRRSSGGGGRGSHSQNRAANGN
WPDAGSEGGQNGNAFNKFRDPQQELDNHQPNKRGGRRNRGGGGGGGGWGG
RRGNRGRDSNRRGGRNNSWQPKDQHVSPGQSNMLYFDNVGDFTEDPPLPR
SSPAPSSLRQESLPPVTFAADLTPPPPVSVAPPDVAVTPEEPTVPLINIK
KEKEMEHKSKIKQFVKAEPKSPKKKKVNSSRSSSTSGEESEPEPGEMVVN
TKAVVVPSPKAKAIKTPVASTPKPKAVKPVSSSDSSTSDSDTDDEQSHPP
AKSKKMEKNTEEDVVCMGSQERQFTITDEEESTEPEDDKKARKQKNKGKT
VDVCGICDKKGHTSFQCQMICRNCSGSYHGLKNCPNPPNLNIAIQSFVEF
AMQQMTAFHCEQGFGFPAGTVTAPVSAKPKKDKKASIKKIKKSSQKRMKV
EPKDHDEEDDEEDDDEDEDDSSESDDSESSEEPHPAPVSKQKRKRGTKAS
VSAAASLPPQVFPFPLLGAPGAPFNSMMYSYRAPFNFSK*

LD01582.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22854-PA 587 GF22854-PA 152..587 115..539 573 46.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24667-PA 541 GG24667-PA 1..541 1..539 1713 81.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10222-PA 570 GH10222-PA 37..570 13..539 471 36.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
mbm-PA 539 CG11604-PA 1..539 1..539 2883 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15060-PA 555 GI15060-PA 302..555 310..539 473 47.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11093-PA 556 GA11093-PA 118..554 107..539 520 42.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16685-PA 546 GM16685-PA 1..546 1..539 1916 90.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22973-PA 552 GD22973-PA 1..552 1..539 1884 89.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17244-PA 554 GJ17244-PA 15..554 22..539 546 36.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21067-PA 554 GK21067-PA 122..554 106..539 469 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16305-PA 555 GE16305-PA 1..555 1..539 1492 75.6 Plus

LD01582.hyp Sequence

Translation from 462 to 2081

> LD01582.hyp
MHNSGGQSGWNLSGEERKPFSNYGRNNQQRRSSGGGGRGSHSQNRAANGN
WPDAGSEGGQNGNAFNKFRDPQQELDNHQPNKRGGRRNRGGGGGGGGWGG
RRGNRGRDSNRRGGRNNSWQPKDQHVSPGQSNMLYFDNVGDFTEDPPLPR
SSPAPSSLRQESLPPVTFAADLTPPPPVSVAPPDVAVTPEEPTVPLINIK
KEKEMEHKSKIKQFVKAEPKSPKKKKVNSSRSSSTSGEESEPEPGEMVVN
TKAVVVPSPKAKAIKTPVASTPKPKAVKPVSSSDSSTSDSDTDDEQSHPP
AKSKKMEKNTEEDVVCMGSQERQFTITDEEESTEPEDDKKARKQKNKGKT
VDVCGICDKKGHTSFQCQMICRNCSGSYHGLKNCPNPPNLNIAIQSFVEF
AMQQMTAFHCEQGFGFPAGTVTAPVSAKPKKDKKASIKKIKKSSQKRMKV
EPKDHDEEDDEEDDDEDEDDSSESDDSESSEEPHPAPVSKQKRKRGTKAS
VSAAASLPPQVFPFPLLGAPGAPFNSMMYSYRAPFNFSK*

LD01582.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
mbm-PA 539 CG11604-PA 1..539 1..539 2883 100 Plus