BDGP Sequence Production Resources |
Search the DGRC for LD01807
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 18 |
Well: | 7 |
Vector: | pBS SK- |
Associated Gene/Transcript | Nipsnap-RA |
Protein status: | LD01807.pep: gold |
Preliminary Size: | 1451 |
Sequenced Size: | 1309 |
Gene | Date | Evidence |
---|---|---|
CG9212 | 2001-01-01 | Release 2 assignment |
CG9212 | 2001-10-10 | Blastp of sequenced clone |
CG9212 | 2003-01-01 | Sim4 clustering to Release 3 |
Nipsnap | 2008-04-29 | Release 5.5 accounting |
Nipsnap | 2008-08-15 | Release 5.9 accounting |
Nipsnap | 2008-12-18 | 5.12 accounting |
1309 bp (1309 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061048
> LD01807.complete TTAAGACAGCTCTACTGCATATTATTTTGTTTTCTTTTAACGTTAACATT TCATTTAAATATTATTTTAGTTTGTAACACTCCCGCAAATAACTATAAAA TCCTACATAAATCGAAAATGCTTAAGCTACGTAATCTATTGGCCGTCGGC AAAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAA CGATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAA CCAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCC CTTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAA CTACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCT GCGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGC CTGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAA AGAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTT CCAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTAC TGGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTC ATACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCC GCGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTC TCGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATC TCTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGAT GGGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGC CGTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAATAATTAGCACTGGG TGTTGCACTTTCTAGCGTTCTGAGAAATTGAAGTTCATCGACGATTGGAC AAATTAGCTGTGAAAACACCGAGAACGCATCTTCGCCTATTTTCCTGTTG AATAGTTATTGTAAATAATGCCAGCTACATATGCAATCATTTAATTTTTT TTTTAAGTATAATTAAGGTCAAAGTGGAAATTTCTATCCAACATTTTTAC GAACCTCTATGTGTGTATCGCCTACGACCTTTGAATTTAACAAAACCAAT TTTGTTTTTATAAAATAAAGCAATTATGAAACTGTTATAAGTTAGTTTTT AAAACAGATCCCAAAATATAGTAAATGGTATTGGATATTAAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nipsnap-RB | 1406 | Nipsnap-RB | 46..1336 | 1..1291 | 6455 | 100 | Plus |
Nipsnap-RC | 1284 | Nipsnap-RC | 57..1278 | 70..1291 | 6110 | 100 | Plus |
Nipsnap-RA | 1447 | Nipsnap-RA | 186..1377 | 100..1291 | 5960 | 100 | Plus |
Nipsnap-RA | 1447 | Nipsnap-RA | 46..144 | 1..99 | 495 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15960184..15960683 | 1289..791 | 2450 | 99.8 | Minus |
chrX | 22417052 | chrX | 15961053..15961346 | 647..354 | 1470 | 100 | Minus |
chrX | 22417052 | chrX | 15961536..15961716 | 353..173 | 905 | 100 | Minus |
chrX | 22417052 | chrX | 15960848..15960993 | 792..647 | 730 | 100 | Minus |
chrX | 22417052 | chrX | 15963232..15963330 | 99..1 | 480 | 99 | Minus |
chrX | 22417052 | chrX | 15962856..15962929 | 173..100 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16070368..16070868 | 1291..791 | 2505 | 100 | Minus |
X | 23542271 | X | 16071238..16071531 | 647..354 | 1470 | 100 | Minus |
X | 23542271 | X | 16071721..16071901 | 353..173 | 905 | 100 | Minus |
X | 23542271 | X | 16071033..16071178 | 792..647 | 730 | 100 | Minus |
X | 23542271 | X | 16073403..16073501 | 99..1 | 495 | 100 | Minus |
X | 23542271 | X | 16073027..16073100 | 173..100 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16078466..16078966 | 1291..791 | 2505 | 100 | Minus |
X | 23527363 | X | 16079336..16079629 | 647..354 | 1470 | 100 | Minus |
X | 23527363 | X | 16079819..16079999 | 353..173 | 905 | 100 | Minus |
X | 23527363 | X | 16079131..16079276 | 792..647 | 730 | 100 | Minus |
X | 23527363 | X | 16081501..16081599 | 99..1 | 495 | 100 | Minus |
X | 23527363 | X | 16081125..16081198 | 173..100 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rover | 7318 | rover ROVER 7318bp | 6550..6624 | 72..1 | 116 | 65.8 | Minus |
Bari1 | 1728 | Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). | 1400..1449 | 1199..1252 | 116 | 74.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15960184..15960683 | 791..1289 | 94 | <- | Minus |
chrX | 15960850..15960992 | 648..790 | 100 | <- | Minus |
chrX | 15961053..15961346 | 354..647 | 100 | <- | Minus |
chrX | 15961536..15961715 | 174..353 | 100 | <- | Minus |
chrX | 15962856..15962929 | 100..173 | 100 | <- | Minus |
chrX | 15963232..15963330 | 1..99 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RC | 1..822 | 118..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RC | 1..822 | 118..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RC | 1..822 | 118..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RC | 1..822 | 118..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RA | 1..822 | 118..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RB | 28..1316 | 1..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RB | 28..1316 | 1..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RB | 28..1316 | 1..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RB | 28..1316 | 1..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nipsnap-RB | 68..1356 | 1..1289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16073403..16073501 | 1..99 | 100 | Minus | |
X | 16070370..16070868 | 791..1289 | 100 | <- | Minus |
X | 16071035..16071177 | 648..790 | 100 | <- | Minus |
X | 16071238..16071531 | 354..647 | 100 | <- | Minus |
X | 16071721..16071900 | 174..353 | 100 | <- | Minus |
X | 16073027..16073100 | 100..173 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16073403..16073501 | 1..99 | 100 | Minus | |
X | 16070370..16070868 | 791..1289 | 100 | <- | Minus |
X | 16071035..16071177 | 648..790 | 100 | <- | Minus |
X | 16071238..16071531 | 354..647 | 100 | <- | Minus |
X | 16071721..16071900 | 174..353 | 100 | <- | Minus |
X | 16073027..16073100 | 100..173 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16073403..16073501 | 1..99 | 100 | Minus | |
X | 16070370..16070868 | 791..1289 | 100 | <- | Minus |
X | 16071035..16071177 | 648..790 | 100 | <- | Minus |
X | 16071238..16071531 | 354..647 | 100 | <- | Minus |
X | 16071721..16071900 | 174..353 | 100 | <- | Minus |
X | 16073027..16073100 | 100..173 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15965068..15965210 | 648..790 | 100 | <- | Minus |
arm_X | 15965271..15965564 | 354..647 | 100 | <- | Minus |
arm_X | 15965754..15965933 | 174..353 | 100 | <- | Minus |
arm_X | 15967060..15967133 | 100..173 | 100 | <- | Minus |
arm_X | 15967436..15967534 | 1..99 | 100 | Minus | |
arm_X | 15964403..15964901 | 791..1289 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16078468..16078966 | 791..1289 | 100 | <- | Minus |
X | 16079133..16079275 | 648..790 | 100 | <- | Minus |
X | 16079336..16079629 | 354..647 | 100 | <- | Minus |
X | 16079819..16079998 | 174..353 | 100 | <- | Minus |
X | 16081125..16081198 | 100..173 | 100 | <- | Minus |
X | 16081501..16081599 | 1..99 | 100 | Minus |
Translation from 0 to 938
> LD01807.hyp LRQLYCILFCFLLTLTFHLNIILVCNTPANNYKILHKSKMLKLRNLLAVG KSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHSRMLSDKEIIYA LHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVASWTVQVGDMDQC LHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRSRHLQYLLAFSY WPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYRKHNNEAFAGFF SQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYTVPLIREMHC RVLAPTEFSPSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nipsnap-PF | 273 | CG9212-PF | 1..273 | 40..312 | 1472 | 100 | Plus |
Nipsnap-PC | 273 | CG9212-PC | 1..273 | 40..312 | 1472 | 100 | Plus |
Nipsnap-PA | 273 | CG9212-PA | 1..273 | 40..312 | 1472 | 100 | Plus |
Nipsnap-PB | 273 | CG9212-PB | 1..273 | 40..312 | 1472 | 100 | Plus |
Translation from 117 to 938
> LD01807.pep MLKLRNLLAVGKSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHS RMLSDKEIIYALHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVAS WTVQVGDMDQCLHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRS RHLQYLLAFSYWPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYR KHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVA YTVPLIREMHCRVLAPTEFSPSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19849-PA | 208 | GF19849-PA | 13..158 | 80..225 | 769 | 94.5 | Plus |
Dana\GF19326-PA | 67 | GF19326-PA | 20..67 | 226..273 | 254 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19348-PA | 273 | GG19348-PA | 1..273 | 1..273 | 1446 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12880-PA | 274 | GH12880-PA | 1..274 | 1..273 | 1348 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nipsnap-PF | 273 | CG9212-PF | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PC | 273 | CG9212-PC | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PA | 273 | CG9212-PA | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PB | 273 | CG9212-PB | 1..273 | 1..273 | 1472 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11203-PA | 275 | GI11203-PA | 1..275 | 1..273 | 1318 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15817-PA | 274 | GL15817-PA | 1..274 | 1..273 | 1358 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21617-PA | 274 | GA21617-PA | 1..274 | 1..273 | 1351 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12981-PA | 273 | GM12981-PA | 1..273 | 1..273 | 1456 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15763-PA | 273 | GD15763-PA | 1..273 | 1..273 | 1458 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18493-PA | 276 | GJ18493-PA | 1..276 | 1..273 | 1345 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25223-PA | 277 | GK25223-PA | 1..277 | 1..273 | 1341 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15994-PA | 273 | GE15994-PA | 1..273 | 1..273 | 1441 | 97.4 | Plus |