Clone LD01807 Report

Search the DGRC for LD01807

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:18
Well:7
Vector:pBS SK-
Associated Gene/TranscriptNipsnap-RA
Protein status:LD01807.pep: gold
Preliminary Size:1451
Sequenced Size:1309

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9212 2001-01-01 Release 2 assignment
CG9212 2001-10-10 Blastp of sequenced clone
CG9212 2003-01-01 Sim4 clustering to Release 3
Nipsnap 2008-04-29 Release 5.5 accounting
Nipsnap 2008-08-15 Release 5.9 accounting
Nipsnap 2008-12-18 5.12 accounting

Clone Sequence Records

LD01807.complete Sequence

1309 bp (1309 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061048

> LD01807.complete
TTAAGACAGCTCTACTGCATATTATTTTGTTTTCTTTTAACGTTAACATT
TCATTTAAATATTATTTTAGTTTGTAACACTCCCGCAAATAACTATAAAA
TCCTACATAAATCGAAAATGCTTAAGCTACGTAATCTATTGGCCGTCGGC
AAAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAA
CGATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAA
CCAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCC
CTTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAA
CTACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCT
GCGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGC
CTGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAA
AGAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTT
CCAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTAC
TGGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTC
ATACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCC
GCGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTC
TCGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATC
TCTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGAT
GGGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGC
CGTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAATAATTAGCACTGGG
TGTTGCACTTTCTAGCGTTCTGAGAAATTGAAGTTCATCGACGATTGGAC
AAATTAGCTGTGAAAACACCGAGAACGCATCTTCGCCTATTTTCCTGTTG
AATAGTTATTGTAAATAATGCCAGCTACATATGCAATCATTTAATTTTTT
TTTTAAGTATAATTAAGGTCAAAGTGGAAATTTCTATCCAACATTTTTAC
GAACCTCTATGTGTGTATCGCCTACGACCTTTGAATTTAACAAAACCAAT
TTTGTTTTTATAAAATAAAGCAATTATGAAACTGTTATAAGTTAGTTTTT
AAAACAGATCCCAAAATATAGTAAATGGTATTGGATATTAAAAAAAAAAA
AAAAAAAAA

LD01807.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RB 1406 Nipsnap-RB 46..1336 1..1291 6455 100 Plus
Nipsnap-RC 1284 Nipsnap-RC 57..1278 70..1291 6110 100 Plus
Nipsnap-RA 1447 Nipsnap-RA 186..1377 100..1291 5960 100 Plus
Nipsnap-RA 1447 Nipsnap-RA 46..144 1..99 495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15960184..15960683 1289..791 2450 99.8 Minus
chrX 22417052 chrX 15961053..15961346 647..354 1470 100 Minus
chrX 22417052 chrX 15961536..15961716 353..173 905 100 Minus
chrX 22417052 chrX 15960848..15960993 792..647 730 100 Minus
chrX 22417052 chrX 15963232..15963330 99..1 480 99 Minus
chrX 22417052 chrX 15962856..15962929 173..100 370 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16070368..16070868 1291..791 2505 100 Minus
X 23542271 X 16071238..16071531 647..354 1470 100 Minus
X 23542271 X 16071721..16071901 353..173 905 100 Minus
X 23542271 X 16071033..16071178 792..647 730 100 Minus
X 23542271 X 16073403..16073501 99..1 495 100 Minus
X 23542271 X 16073027..16073100 173..100 370 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16078466..16078966 1291..791 2505 100 Minus
X 23527363 X 16079336..16079629 647..354 1470 100 Minus
X 23527363 X 16079819..16079999 353..173 905 100 Minus
X 23527363 X 16079131..16079276 792..647 730 100 Minus
X 23527363 X 16081501..16081599 99..1 495 100 Minus
X 23527363 X 16081125..16081198 173..100 370 100 Minus
Blast to na_te.dros performed 2019-03-15 13:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 6550..6624 72..1 116 65.8 Minus
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1400..1449 1199..1252 116 74.1 Plus

LD01807.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:02:16 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15960184..15960683 791..1289 94 <- Minus
chrX 15960850..15960992 648..790 100 <- Minus
chrX 15961053..15961346 354..647 100 <- Minus
chrX 15961536..15961715 174..353 100 <- Minus
chrX 15962856..15962929 100..173 100 <- Minus
chrX 15963232..15963330 1..99 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:30:01 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 1..822 118..939 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:39 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 1..822 118..939 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:55:35 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 1..822 118..939 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:24 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 1..822 118..939 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:18:52 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 1..822 118..939 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:31 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RB 28..1316 1..1289 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:39 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RB 28..1316 1..1289 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:55:35 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RB 28..1316 1..1289 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:24 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RB 28..1316 1..1289 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:18:52 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RB 68..1356 1..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:16 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
X 16073403..16073501 1..99 100   Minus
X 16070370..16070868 791..1289 100 <- Minus
X 16071035..16071177 648..790 100 <- Minus
X 16071238..16071531 354..647 100 <- Minus
X 16071721..16071900 174..353 100 <- Minus
X 16073027..16073100 100..173 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:16 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
X 16073403..16073501 1..99 100   Minus
X 16070370..16070868 791..1289 100 <- Minus
X 16071035..16071177 648..790 100 <- Minus
X 16071238..16071531 354..647 100 <- Minus
X 16071721..16071900 174..353 100 <- Minus
X 16073027..16073100 100..173 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:16 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
X 16073403..16073501 1..99 100   Minus
X 16070370..16070868 791..1289 100 <- Minus
X 16071035..16071177 648..790 100 <- Minus
X 16071238..16071531 354..647 100 <- Minus
X 16071721..16071900 174..353 100 <- Minus
X 16073027..16073100 100..173 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:55:35 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15965068..15965210 648..790 100 <- Minus
arm_X 15965271..15965564 354..647 100 <- Minus
arm_X 15965754..15965933 174..353 100 <- Minus
arm_X 15967060..15967133 100..173 100 <- Minus
arm_X 15967436..15967534 1..99 100   Minus
arm_X 15964403..15964901 791..1289 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:18 Download gff for LD01807.complete
Subject Subject Range Query Range Percent Splice Strand
X 16078468..16078966 791..1289 100 <- Minus
X 16079133..16079275 648..790 100 <- Minus
X 16079336..16079629 354..647 100 <- Minus
X 16079819..16079998 174..353 100 <- Minus
X 16081125..16081198 100..173 100 <- Minus
X 16081501..16081599 1..99 100   Minus

LD01807.hyp Sequence

Translation from 0 to 938

> LD01807.hyp
LRQLYCILFCFLLTLTFHLNIILVCNTPANNYKILHKSKMLKLRNLLAVG
KSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHSRMLSDKEIIYA
LHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVASWTVQVGDMDQC
LHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRSRHLQYLLAFSY
WPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYRKHNNEAFAGFF
SQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYTVPLIREMHC
RVLAPTEFSPSQ*

LD01807.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-PF 273 CG9212-PF 1..273 40..312 1472 100 Plus
Nipsnap-PC 273 CG9212-PC 1..273 40..312 1472 100 Plus
Nipsnap-PA 273 CG9212-PA 1..273 40..312 1472 100 Plus
Nipsnap-PB 273 CG9212-PB 1..273 40..312 1472 100 Plus

LD01807.pep Sequence

Translation from 117 to 938

> LD01807.pep
MLKLRNLLAVGKSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHS
RMLSDKEIIYALHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVAS
WTVQVGDMDQCLHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRS
RHLQYLLAFSYWPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYR
KHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVA
YTVPLIREMHCRVLAPTEFSPSQ*

LD01807.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19849-PA 208 GF19849-PA 13..158 80..225 769 94.5 Plus
Dana\GF19326-PA 67 GF19326-PA 20..67 226..273 254 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19348-PA 273 GG19348-PA 1..273 1..273 1446 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12880-PA 274 GH12880-PA 1..274 1..273 1348 90.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-PF 273 CG9212-PF 1..273 1..273 1472 100 Plus
Nipsnap-PC 273 CG9212-PC 1..273 1..273 1472 100 Plus
Nipsnap-PA 273 CG9212-PA 1..273 1..273 1472 100 Plus
Nipsnap-PB 273 CG9212-PB 1..273 1..273 1472 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11203-PA 275 GI11203-PA 1..275 1..273 1318 90.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15817-PA 274 GL15817-PA 1..274 1..273 1358 90.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21617-PA 274 GA21617-PA 1..274 1..273 1351 90.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12981-PA 273 GM12981-PA 1..273 1..273 1456 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15763-PA 273 GD15763-PA 1..273 1..273 1458 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18493-PA 276 GJ18493-PA 1..276 1..273 1345 90.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25223-PA 277 GK25223-PA 1..277 1..273 1341 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15994-PA 273 GE15994-PA 1..273 1..273 1441 97.4 Plus