Clone LD01937 Report

Search the DGRC for LD01937

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:19
Well:37
Vector:pBS SK-
Associated Gene/TranscriptCG12567-RA
Protein status:LD01937.pep: gold
Sequenced Size:2168

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12567-RA 2009-01-19 Manual selection by Sue Celniker

Clone Sequence Records

LD01937.complete Sequence

2168 bp assembled on 2009-05-08

GenBank Submission: BT083411.1

> LD01937.complete
AGTGATGCTCTACATTACTCACCATTGTTAGTTAAGTCTGTGTGTTTATT
TTATTATGGGATTGGTTTGGGCAGTGAAGAATTACCACTGAAAAAACTGA
TACAATATTATCATTGAAAGTGGTTGTAAAAATTTTTGCAGTGGGCTTTT
AACAGAACGCAAACTTAAATTTTTCCTTGAAAAAGCGGTAAAAACTAAGC
CGGCGATAGTAGATCCATTTTCCCTACATACGATCAGAACTTACATAGTT
TAAATGTCTTCAACCGAAGTGAAGCTATCAAGGCTGCTGATCTTAGCGCA
AAAGTTTAACAACTTTTACCTTTCAGGTATTCATAAGTGTGACATTCGTC
CATTTGTGGTAGAGGGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTA
AAACATCTCGAAAAGTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCA
AACTAAACAGGGTTTGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACG
AGCGCACTGAGCAACTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGA
CTTTTTCCTGCATTACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGC
AGACTGCAGAGCTCTACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTG
GAGTGCGCAAGTACGGCGTCGATATAAACGGTTACGTAAGACATCCGACG
CTTGGACTATGCATTTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTG
GCCTGGAAAGTGGGACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTG
GTATTAAGGAAACAGCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCT
TCTGACCTAGTCAAGAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTT
TGAAAGCCGACAAGGACTTTTTCCCAATACCGAATATGTTTTCGACTTAG
AGCTACCACTTGACTTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCC
TTTGAGCTGCTAACAGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGA
TTTCAAGACAACTTCAGCGCCTGTGGTGATTGATTTTCTTATCCGACACG
GTCACATAACAGCAGATGATGTTGTCGACTTCACACAAATCGTTGAGCTC
TTGCACGTGCCCTTACAGTCCATATATACGTACAAGACACGCTTTGAGCA
ATCCATAAAACAACCTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACT
GTGCAATATTTCAGAAAATATCAATGGAGAATGGGCACAAGAAGGCGAAT
TAATTTGAAATGCTGTATAGTCATAAAAAAAATAATGAGGCATGGCTACA
AAGAAATATTAATGCAAGCTCAAAACAAAATAAAAGTGATTGTAATTGAA
GTGAACTTTCTGAAGCCCAGGCTAGTCTCCAAGAGGTAAACATTAATGGA
CGTATTGCCCTTCCCTAGAAGTCTGATTATAAAATGAAGTTTCGTGTCAG
CAAAGTTCATAAAAAATACGATTTTGTTTTAAGCTTTTTTTATTTCACAA
TATCGGTCAGCATTAAGAAGTAAAATTATTACAAATTATCAAATATCACT
TCATTGTGTAGTCTACTAACAGCTGTGAAGAGTTTGTAATGCACTTAGAA
TTTTAAAAGTAGTGTTGAGCTGGTTTGTATTTGAATAATGAACAAAATAA
TGACAAATTCTAAAATTCTGCTAAAAAATATTAGGAGGTTATTATGATGT
TAAGGTAGATTAAGCATAATGTTTTCTTGTTTAAGGATATGCGTTGGTTT
GGGCTTTATTTGTTGTTTTCGTTGGTATAAACAATCAAATTTTAACTATA
TTTTTAAATATTAATTGTTATTATATAACCTCCCTTATACTTGTCAAACA
TGGAGAAAAATCCCAGAACTCGTTTTTTTTCAAAATACTAAATTTACTTA
AACTGCAATATTATAGCAGTGTGAATTAACTATAGTGTATGTATATTAAT
ATATTATATTACATCTTTTAATATATGTAGTAACCAAAGTGCTCAAAATT
AAGAGATACATTATAGGTAGGATAATGTTACTTATGTACATTTTTGTAAC
CTAATACAATATTTAATAAAGTAAATATATAAAAAGCCGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

LD01937.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-RA 2214 CG12567-RA 76..2214 1..2139 10695 100 Plus
CG12567-RE 2266 CG12567-RE 584..2266 457..2139 8415 100 Plus
CG12567-RC 2204 CG12567-RC 534..2204 469..2139 8355 100 Plus
CG12567-RE 2266 CG12567-RE 76..536 1..461 2305 100 Plus
CG12567-RC 2204 CG12567-RC 76..535 1..460 2300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2LHet 368865 chr2LHet 19634..20652 2139..1121 5095 100 Minus
chr2LHet 368865 chr2LHet 20724..21388 1121..457 3325 100 Minus
chrU 10048995 chrU 3352020..3352395 2139..1763 1690 97.6 Minus
chr2LHet 368865 chr2LHet 7917..8293 2139..1763 1680 97.4 Minus
chr2LHet 368865 chr2LHet 1702..2077 2139..1763 1675 97.4 Minus
chr2LHet 368865 chr2LHet 4916..5291 2139..1763 1675 97.4 Minus
chr2LHet 368865 chr2LHet 32568..32896 329..1 1645 100 Minus
chr2LHet 368865 chr2LHet 16268..16626 2122..1763 1605 97.5 Minus
chrU 10048995 chrU 3348952..3349187 1996..1763 1100 98.7 Minus
chr2LHet 368865 chr2LHet 179478..179715 1121..884 1070 96.6 Minus
chr2LHet 368865 chr2LHet 271098..271335 884..1121 1070 96.6 Plus
chr2L 23010047 chr2L 22966700..22966943 1883..2123 860 93 Plus
chr2LHet 368865 chr2LHet 176013..176179 1339..1174 695 95.8 Minus
chr2LHet 368865 chr2LHet 21436..21572 461..325 685 100 Minus
chr2LHet 368865 chr2LHet 175838..176014 1540..1367 685 93.8 Minus
chrU 10048995 chrU 3348058..3348140 2088..2006 370 96.4 Minus
chrU 10048995 chrU 3343916..3343960 2139..2095 210 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23161116..23162140 2145..1121 5125 100 Minus
2L 23513712 2L 23162212..23162876 1121..457 3325 100 Minus
2L 23513712 2L 23140222..23140603 2145..1763 1720 97.7 Minus
2L 23513712 2L 23149437..23149819 2145..1763 1710 97.4 Minus
2L 23513712 2L 23143222..23143603 2145..1763 1705 97.4 Minus
2L 23513712 2L 23146436..23146817 2145..1763 1705 97.4 Minus
2L 23513712 2L 23174059..23174387 329..1 1645 100 Minus
2L 23513712 2L 23157794..23158152 2122..1763 1605 97.5 Minus
2L 23513712 2L 23137160..23137395 1996..1763 1100 98.7 Minus
2L 23513712 2L 23323955..23324192 1121..884 1070 96.6 Minus
2L 23513712 2L 23415916..23416153 884..1121 1070 96.6 Plus
2L 23513712 2L 23075465..23075708 1883..2123 860 93 Plus
2L 23513712 2L 23320471..23320637 1339..1174 695 95.8 Minus
2L 23513712 2L 23162924..23163060 461..325 685 100 Minus
2L 23513712 2L 23320296..23320472 1540..1367 685 93.8 Minus
2L 23513712 2L 23136266..23136348 2088..2006 370 96.4 Minus
2L 23513712 2L 23132119..23132169 2145..2095 240 98 Minus
X 23542271 X 6653048..6653091 2125..2168 205 97.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23161116..23162140 2145..1121 5125 100 Minus
2L 23513712 2L 23162212..23162876 1121..457 3325 100 Minus
2L 23513712 2L 23140222..23140603 2145..1763 1740 97.6 Minus
2L 23513712 2L 23149437..23149819 2145..1763 1730 97.4 Minus
2L 23513712 2L 23146436..23146817 2145..1763 1725 97.4 Minus
2L 23513712 2L 23143222..23143603 2145..1763 1725 97.4 Minus
2L 23513712 2L 23174059..23174387 329..1 1645 100 Minus
2L 23513712 2L 23157794..23158152 2122..1763 1625 97.5 Minus
2L 23513712 2L 23137160..23137395 1996..1763 1110 98.7 Minus
2L 23513712 2L 23415916..23416153 884..1121 1070 96.6 Plus
2L 23513712 2L 23323955..23324192 1121..884 1070 96.6 Minus
2L 23513712 2L 23075465..23075708 1883..2123 890 93 Plus
2L 23513712 2L 23320471..23320637 1339..1174 705 95.8 Minus
2L 23513712 2L 23320296..23320472 1540..1367 695 93.7 Minus
2L 23513712 2L 23162924..23163060 461..325 685 100 Minus
2L 23513712 2L 23136266..23136348 2088..2006 370 96.3 Minus
2L 23513712 2L 23132119..23132169 2145..2095 240 98 Minus
X 23527363 X 6661146..6661189 2125..2168 205 97.7 Plus
2L 23513712 2L 23154454..23154488 2145..2111 160 97.1 Minus
2L 23513712 2L 23152651..23152693 2145..2103 155 90.6 Minus
Blast to na_te.dros performed 2019-03-16 21:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 328..364 1704..1741 124 84.2 Plus
gypsy9 5349 gypsy9 GYPSY9 5349bp 361..527 1321..1484 116 53.9 Plus
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 2456..2494 1904..1942 114 76.9 Plus

LD01937.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:16:26 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
chr2LHet 19634..20651 1122..2139 100 <- Minus
chr2LHet 20724..21384 461..1121 100 <- Minus
chr2LHet 21437..21570 327..460 100 <- Minus
chr2LHet 32571..32896 1..326 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:57:21 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 1..1050 254..1303 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:51:35 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 1..1050 254..1303 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:42 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 1..1050 254..1303 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:57 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 1..1050 254..1303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:21 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 30..2168 1..2139 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:51:35 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 30..2168 1..2139 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:42 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 6..2144 1..2139 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:57 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RA 6..2144 1..2139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:26 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 1122..2139 100 <- Minus
2L 23162212..23162872 461..1121 100 <- Minus
2L 23162925..23163058 327..460 100 <- Minus
2L 23174062..23174387 1..326 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:26 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 1122..2139 100 <- Minus
2L 23162212..23162872 461..1121 100 <- Minus
2L 23162925..23163058 327..460 100 <- Minus
2L 23174062..23174387 1..326 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:26 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 1122..2139 100 <- Minus
2L 23162212..23162872 461..1121 100 <- Minus
2L 23162925..23163058 327..460 100 <- Minus
2L 23174062..23174387 1..326 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:42 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 19633..20650 1122..2139 100 <- Minus
2LHet 20723..21383 461..1121 100 <- Minus
2LHet 21436..21569 327..460 100 <- Minus
2LHet 32573..32898 1..326 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:42:20 Download gff for LD01937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 1122..2139 100 <- Minus
2L 23162212..23162872 461..1121 100 <- Minus
2L 23162925..23163058 327..460 100 <- Minus
2L 23174062..23174387 1..326 100   Minus

LD01937.hyp Sequence

Translation from 253 to 1302

> LD01937.hyp
MSSTEVKLSRLLILAQKFNNFYLSGIHKCDIRPFVVEGKQVGLIKSDVLK
HLEKYPEVFCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGL
FPALQGWRDEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTL
GLCIWLQQRSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPS
DLVKNLVSAGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAF
ELLTAKDCVERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELL
HVPLQSIYTYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

LD01937.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PG 349 CG12567-PG 1..349 1..349 1833 100 Plus
CG12567-PA 349 CG12567-PA 1..349 1..349 1833 100 Plus
CG12567-PF 341 CG12567-PF 12..341 20..349 1716 98.2 Plus
CG12567-PD 335 CG12567-PD 12..335 26..349 1713 100 Plus
CG12567-PC 70 CG12567-PC 1..69 1..69 356 100 Plus

LD01937.pep Sequence

Translation from 253 to 1302

> LD01937.pep
MSSTEVKLSRLLILAQKFNNFYLSGIHKCDIRPFVVEGKQVGLIKSDVLK
HLEKYPEVFCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGL
FPALQGWRDEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTL
GLCIWLQQRSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPS
DLVKNLVSAGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAF
ELLTAKDCVERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELL
HVPLQSIYTYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

LD01937.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15848-PA 326 GF15848-PA 1..323 23..348 1481 85.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21418-PA 2299 GG21418-PA 2013..2299 63..349 1478 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13287-PA 337 GH13287-PA 11..330 27..345 1414 82.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PG 349 CG12567-PG 1..349 1..349 1833 100 Plus
CG12567-PA 349 CG12567-PA 1..349 1..349 1833 100 Plus
CG12567-PF 341 CG12567-PF 12..341 20..349 1716 98.2 Plus
CG12567-PD 335 CG12567-PD 12..335 26..349 1713 100 Plus
CG12567-PC 70 CG12567-PC 1..69 1..69 356 100 Plus
CG12567-PE 75 CG12567-PE 1..69 1..69 356 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17480-PA 352 GI17480-PA 1..350 1..349 1495 80.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21174-PA 577 GL21174-PA 282..576 61..348 1317 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30010-PA 356 GA30010-PA 1..355 1..348 1615 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11126-PA 226 GM11126-PA 1..226 124..349 1202 98.2 Plus
Dsec\GM18784-PA 210 GM18784-PA 1..210 140..349 1115 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15002-PA 352 GJ15002-PA 1..348 1..347 1552 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23708-PA 352 GK23708-PA 3..351 2..348 1525 83.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14900-PA 335 GE14900-PA 13..335 27..349 1676 95.7 Plus