BDGP Sequence Production Resources |
Search the DGRC for LD01937
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 19 |
Well: | 37 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG12567-RA |
Protein status: | LD01937.pep: gold |
Sequenced Size: | 2168 |
Gene | Date | Evidence |
---|---|---|
CG12567-RA | 2009-01-19 | Manual selection by Sue Celniker |
2168 bp assembled on 2009-05-08
GenBank Submission: BT083411.1
> LD01937.complete AGTGATGCTCTACATTACTCACCATTGTTAGTTAAGTCTGTGTGTTTATT TTATTATGGGATTGGTTTGGGCAGTGAAGAATTACCACTGAAAAAACTGA TACAATATTATCATTGAAAGTGGTTGTAAAAATTTTTGCAGTGGGCTTTT AACAGAACGCAAACTTAAATTTTTCCTTGAAAAAGCGGTAAAAACTAAGC CGGCGATAGTAGATCCATTTTCCCTACATACGATCAGAACTTACATAGTT TAAATGTCTTCAACCGAAGTGAAGCTATCAAGGCTGCTGATCTTAGCGCA AAAGTTTAACAACTTTTACCTTTCAGGTATTCATAAGTGTGACATTCGTC CATTTGTGGTAGAGGGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTA AAACATCTCGAAAAGTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCA AACTAAACAGGGTTTGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACG AGCGCACTGAGCAACTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGA CTTTTTCCTGCATTACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGC AGACTGCAGAGCTCTACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTG GAGTGCGCAAGTACGGCGTCGATATAAACGGTTACGTAAGACATCCGACG CTTGGACTATGCATTTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTG GCCTGGAAAGTGGGACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTG GTATTAAGGAAACAGCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCT TCTGACCTAGTCAAGAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTT TGAAAGCCGACAAGGACTTTTTCCCAATACCGAATATGTTTTCGACTTAG AGCTACCACTTGACTTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCC TTTGAGCTGCTAACAGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGA TTTCAAGACAACTTCAGCGCCTGTGGTGATTGATTTTCTTATCCGACACG GTCACATAACAGCAGATGATGTTGTCGACTTCACACAAATCGTTGAGCTC TTGCACGTGCCCTTACAGTCCATATATACGTACAAGACACGCTTTGAGCA ATCCATAAAACAACCTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACT GTGCAATATTTCAGAAAATATCAATGGAGAATGGGCACAAGAAGGCGAAT TAATTTGAAATGCTGTATAGTCATAAAAAAAATAATGAGGCATGGCTACA AAGAAATATTAATGCAAGCTCAAAACAAAATAAAAGTGATTGTAATTGAA GTGAACTTTCTGAAGCCCAGGCTAGTCTCCAAGAGGTAAACATTAATGGA CGTATTGCCCTTCCCTAGAAGTCTGATTATAAAATGAAGTTTCGTGTCAG CAAAGTTCATAAAAAATACGATTTTGTTTTAAGCTTTTTTTATTTCACAA TATCGGTCAGCATTAAGAAGTAAAATTATTACAAATTATCAAATATCACT TCATTGTGTAGTCTACTAACAGCTGTGAAGAGTTTGTAATGCACTTAGAA TTTTAAAAGTAGTGTTGAGCTGGTTTGTATTTGAATAATGAACAAAATAA TGACAAATTCTAAAATTCTGCTAAAAAATATTAGGAGGTTATTATGATGT TAAGGTAGATTAAGCATAATGTTTTCTTGTTTAAGGATATGCGTTGGTTT GGGCTTTATTTGTTGTTTTCGTTGGTATAAACAATCAAATTTTAACTATA TTTTTAAATATTAATTGTTATTATATAACCTCCCTTATACTTGTCAAACA TGGAGAAAAATCCCAGAACTCGTTTTTTTTCAAAATACTAAATTTACTTA AACTGCAATATTATAGCAGTGTGAATTAACTATAGTGTATGTATATTAAT ATATTATATTACATCTTTTAATATATGTAGTAACCAAAGTGCTCAAAATT AAGAGATACATTATAGGTAGGATAATGTTACTTATGTACATTTTTGTAAC CTAATACAATATTTAATAAAGTAAATATATAAAAAGCCGAAAAAAAAAAA AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-RA | 2214 | CG12567-RA | 76..2214 | 1..2139 | 10695 | 100 | Plus |
CG12567-RE | 2266 | CG12567-RE | 584..2266 | 457..2139 | 8415 | 100 | Plus |
CG12567-RC | 2204 | CG12567-RC | 534..2204 | 469..2139 | 8355 | 100 | Plus |
CG12567-RE | 2266 | CG12567-RE | 76..536 | 1..461 | 2305 | 100 | Plus |
CG12567-RC | 2204 | CG12567-RC | 76..535 | 1..460 | 2300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2LHet | 368865 | chr2LHet | 19634..20652 | 2139..1121 | 5095 | 100 | Minus |
chr2LHet | 368865 | chr2LHet | 20724..21388 | 1121..457 | 3325 | 100 | Minus |
chrU | 10048995 | chrU | 3352020..3352395 | 2139..1763 | 1690 | 97.6 | Minus |
chr2LHet | 368865 | chr2LHet | 7917..8293 | 2139..1763 | 1680 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 1702..2077 | 2139..1763 | 1675 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 4916..5291 | 2139..1763 | 1675 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 32568..32896 | 329..1 | 1645 | 100 | Minus |
chr2LHet | 368865 | chr2LHet | 16268..16626 | 2122..1763 | 1605 | 97.5 | Minus |
chrU | 10048995 | chrU | 3348952..3349187 | 1996..1763 | 1100 | 98.7 | Minus |
chr2LHet | 368865 | chr2LHet | 179478..179715 | 1121..884 | 1070 | 96.6 | Minus |
chr2LHet | 368865 | chr2LHet | 271098..271335 | 884..1121 | 1070 | 96.6 | Plus |
chr2L | 23010047 | chr2L | 22966700..22966943 | 1883..2123 | 860 | 93 | Plus |
chr2LHet | 368865 | chr2LHet | 176013..176179 | 1339..1174 | 695 | 95.8 | Minus |
chr2LHet | 368865 | chr2LHet | 21436..21572 | 461..325 | 685 | 100 | Minus |
chr2LHet | 368865 | chr2LHet | 175838..176014 | 1540..1367 | 685 | 93.8 | Minus |
chrU | 10048995 | chrU | 3348058..3348140 | 2088..2006 | 370 | 96.4 | Minus |
chrU | 10048995 | chrU | 3343916..3343960 | 2139..2095 | 210 | 97.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23161116..23162140 | 2145..1121 | 5125 | 100 | Minus |
2L | 23513712 | 2L | 23162212..23162876 | 1121..457 | 3325 | 100 | Minus |
2L | 23513712 | 2L | 23140222..23140603 | 2145..1763 | 1720 | 97.7 | Minus |
2L | 23513712 | 2L | 23149437..23149819 | 2145..1763 | 1710 | 97.4 | Minus |
2L | 23513712 | 2L | 23143222..23143603 | 2145..1763 | 1705 | 97.4 | Minus |
2L | 23513712 | 2L | 23146436..23146817 | 2145..1763 | 1705 | 97.4 | Minus |
2L | 23513712 | 2L | 23174059..23174387 | 329..1 | 1645 | 100 | Minus |
2L | 23513712 | 2L | 23157794..23158152 | 2122..1763 | 1605 | 97.5 | Minus |
2L | 23513712 | 2L | 23137160..23137395 | 1996..1763 | 1100 | 98.7 | Minus |
2L | 23513712 | 2L | 23323955..23324192 | 1121..884 | 1070 | 96.6 | Minus |
2L | 23513712 | 2L | 23415916..23416153 | 884..1121 | 1070 | 96.6 | Plus |
2L | 23513712 | 2L | 23075465..23075708 | 1883..2123 | 860 | 93 | Plus |
2L | 23513712 | 2L | 23320471..23320637 | 1339..1174 | 695 | 95.8 | Minus |
2L | 23513712 | 2L | 23162924..23163060 | 461..325 | 685 | 100 | Minus |
2L | 23513712 | 2L | 23320296..23320472 | 1540..1367 | 685 | 93.8 | Minus |
2L | 23513712 | 2L | 23136266..23136348 | 2088..2006 | 370 | 96.4 | Minus |
2L | 23513712 | 2L | 23132119..23132169 | 2145..2095 | 240 | 98 | Minus |
X | 23542271 | X | 6653048..6653091 | 2125..2168 | 205 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23161116..23162140 | 2145..1121 | 5125 | 100 | Minus |
2L | 23513712 | 2L | 23162212..23162876 | 1121..457 | 3325 | 100 | Minus |
2L | 23513712 | 2L | 23140222..23140603 | 2145..1763 | 1740 | 97.6 | Minus |
2L | 23513712 | 2L | 23149437..23149819 | 2145..1763 | 1730 | 97.4 | Minus |
2L | 23513712 | 2L | 23146436..23146817 | 2145..1763 | 1725 | 97.4 | Minus |
2L | 23513712 | 2L | 23143222..23143603 | 2145..1763 | 1725 | 97.4 | Minus |
2L | 23513712 | 2L | 23174059..23174387 | 329..1 | 1645 | 100 | Minus |
2L | 23513712 | 2L | 23157794..23158152 | 2122..1763 | 1625 | 97.5 | Minus |
2L | 23513712 | 2L | 23137160..23137395 | 1996..1763 | 1110 | 98.7 | Minus |
2L | 23513712 | 2L | 23415916..23416153 | 884..1121 | 1070 | 96.6 | Plus |
2L | 23513712 | 2L | 23323955..23324192 | 1121..884 | 1070 | 96.6 | Minus |
2L | 23513712 | 2L | 23075465..23075708 | 1883..2123 | 890 | 93 | Plus |
2L | 23513712 | 2L | 23320471..23320637 | 1339..1174 | 705 | 95.8 | Minus |
2L | 23513712 | 2L | 23320296..23320472 | 1540..1367 | 695 | 93.7 | Minus |
2L | 23513712 | 2L | 23162924..23163060 | 461..325 | 685 | 100 | Minus |
2L | 23513712 | 2L | 23136266..23136348 | 2088..2006 | 370 | 96.3 | Minus |
2L | 23513712 | 2L | 23132119..23132169 | 2145..2095 | 240 | 98 | Minus |
X | 23527363 | X | 6661146..6661189 | 2125..2168 | 205 | 97.7 | Plus |
2L | 23513712 | 2L | 23154454..23154488 | 2145..2111 | 160 | 97.1 | Minus |
2L | 23513712 | 2L | 23152651..23152693 | 2145..2103 | 155 | 90.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 328..364 | 1704..1741 | 124 | 84.2 | Plus |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 361..527 | 1321..1484 | 116 | 53.9 | Plus |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 2456..2494 | 1904..1942 | 114 | 76.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2LHet | 19634..20651 | 1122..2139 | 100 | <- | Minus |
chr2LHet | 20724..21384 | 461..1121 | 100 | <- | Minus |
chr2LHet | 21437..21570 | 327..460 | 100 | <- | Minus |
chr2LHet | 32571..32896 | 1..326 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 1..1050 | 254..1303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 1..1050 | 254..1303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 1..1050 | 254..1303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 1..1050 | 254..1303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 30..2168 | 1..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 30..2168 | 1..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 6..2144 | 1..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RA | 6..2144 | 1..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 1122..2139 | 100 | <- | Minus |
2L | 23162212..23162872 | 461..1121 | 100 | <- | Minus |
2L | 23162925..23163058 | 327..460 | 100 | <- | Minus |
2L | 23174062..23174387 | 1..326 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 1122..2139 | 100 | <- | Minus |
2L | 23162212..23162872 | 461..1121 | 100 | <- | Minus |
2L | 23162925..23163058 | 327..460 | 100 | <- | Minus |
2L | 23174062..23174387 | 1..326 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 1122..2139 | 100 | <- | Minus |
2L | 23162212..23162872 | 461..1121 | 100 | <- | Minus |
2L | 23162925..23163058 | 327..460 | 100 | <- | Minus |
2L | 23174062..23174387 | 1..326 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2LHet | 19633..20650 | 1122..2139 | 100 | <- | Minus |
2LHet | 20723..21383 | 461..1121 | 100 | <- | Minus |
2LHet | 21436..21569 | 327..460 | 100 | <- | Minus |
2LHet | 32573..32898 | 1..326 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 1122..2139 | 100 | <- | Minus |
2L | 23162212..23162872 | 461..1121 | 100 | <- | Minus |
2L | 23162925..23163058 | 327..460 | 100 | <- | Minus |
2L | 23174062..23174387 | 1..326 | 100 | Minus |
Translation from 253 to 1302
> LD01937.hyp MSSTEVKLSRLLILAQKFNNFYLSGIHKCDIRPFVVEGKQVGLIKSDVLK HLEKYPEVFCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGL FPALQGWRDEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTL GLCIWLQQRSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPS DLVKNLVSAGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAF ELLTAKDCVERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELL HVPLQSIYTYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-PG | 349 | CG12567-PG | 1..349 | 1..349 | 1833 | 100 | Plus |
CG12567-PA | 349 | CG12567-PA | 1..349 | 1..349 | 1833 | 100 | Plus |
CG12567-PF | 341 | CG12567-PF | 12..341 | 20..349 | 1716 | 98.2 | Plus |
CG12567-PD | 335 | CG12567-PD | 12..335 | 26..349 | 1713 | 100 | Plus |
CG12567-PC | 70 | CG12567-PC | 1..69 | 1..69 | 356 | 100 | Plus |
Translation from 253 to 1302
> LD01937.pep MSSTEVKLSRLLILAQKFNNFYLSGIHKCDIRPFVVEGKQVGLIKSDVLK HLEKYPEVFCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGL FPALQGWRDEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTL GLCIWLQQRSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPS DLVKNLVSAGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAF ELLTAKDCVERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELL HVPLQSIYTYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15848-PA | 326 | GF15848-PA | 1..323 | 23..348 | 1481 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21418-PA | 2299 | GG21418-PA | 2013..2299 | 63..349 | 1478 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13287-PA | 337 | GH13287-PA | 11..330 | 27..345 | 1414 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-PG | 349 | CG12567-PG | 1..349 | 1..349 | 1833 | 100 | Plus |
CG12567-PA | 349 | CG12567-PA | 1..349 | 1..349 | 1833 | 100 | Plus |
CG12567-PF | 341 | CG12567-PF | 12..341 | 20..349 | 1716 | 98.2 | Plus |
CG12567-PD | 335 | CG12567-PD | 12..335 | 26..349 | 1713 | 100 | Plus |
CG12567-PC | 70 | CG12567-PC | 1..69 | 1..69 | 356 | 100 | Plus |
CG12567-PE | 75 | CG12567-PE | 1..69 | 1..69 | 356 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17480-PA | 352 | GI17480-PA | 1..350 | 1..349 | 1495 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21174-PA | 577 | GL21174-PA | 282..576 | 61..348 | 1317 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30010-PA | 356 | GA30010-PA | 1..355 | 1..348 | 1615 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11126-PA | 226 | GM11126-PA | 1..226 | 124..349 | 1202 | 98.2 | Plus |
Dsec\GM18784-PA | 210 | GM18784-PA | 1..210 | 140..349 | 1115 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15002-PA | 352 | GJ15002-PA | 1..348 | 1..347 | 1552 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23708-PA | 352 | GK23708-PA | 3..351 | 2..348 | 1525 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14900-PA | 335 | GE14900-PA | 13..335 | 27..349 | 1676 | 95.7 | Plus |