LD01950.complete Sequence
3609 bp (3609 high quality bases) assembled on 2002-06-28
GenBank Submission: AY129435
> LD01950.complete
TACAAATCCCACAATATAATGTTAAATTAATCATATTTATACTTATCTTC
ATTTAAGTAAAGCGAAATATTCGATTGACCCTCGAAGTAAACAACCCAGG
TGCTCAAAAATGAAGCTAACAAAGTTAGATTAATCGGTGTCTACGAATTA
TCTGGAAACACAAGCATTTCCCGTCATCTAACTCAAACTGCCCAACTCGA
AAAATCAACAATATTTTTGCATCGGGCCAAAGGTGCATTAAAACCGGAGC
CTCAAGTCTCGGGCGGCAGGTAATTTATTCAAGTTCAAAACAGCCACCCG
GGGATTCTCCTAGACATCGGTTGCCACAAGAAAAGAAGAAGAATTAGGCG
TAATCTTCTAGAAAATTGGTGATTTCAGCCGAGAATGTTTGAGAATTTTC
GAGGTATTTTTCGGAAACGGCGTCGCTGCGAGTCGGACACAACACCGCCG
CCACCGCCGCCGCAACCCGCCCAGGAGGCGGAGATAATAAACCGATATCC
GGAAGATATAGAAGCCGATACGCCCGAGTCCAATGATGGCTTTGACGCCT
CCTGGACCGAAGGCTCTTTTCACAGCCCACATTCAGATAGGTAATTGAAT
TCTGCGCATTCACGCTTCCTCTTCTCTCTTATTGCAGCTTCAAAGCAAAA
ACAGATAAAATTAAGCTTAAGCAACAGCATCAAACACTTCGACACCCACT
CGAAAAAAAAAGCTTAAGACATTCCAAAAAAAGTAGCCAGCAAAGCGGCT
AAAAAAAAAAATAAATAAGATAAAACCAAAACCCAAAACGAAACAGTAGG
CAGCTATCCAACCATCTTGGGTGACAAACACTTGACCGGCTTTTTGGAGG
GCGACAGGTTTAAATCAAATCTGGAGCAGCCGCAGGATATGGAAGTTGAT
GCGCCAACAACGCAGGAAACCAGTGACACTCATCATCATCACCATAGTAC
TTATCACCAGCAGCTGCATCAGATCTCGCCCAGCGATTACCACTCGGAGG
CATCCATGAATTTTGATCATTTGCAAGACCTGAGGGCCGATGCCATGGCC
TCCTCATCCCCATCCGGATCCGGAGGTGGTGGCAATGGCGGGAACAGCTC
CTACGGACTCGTCGACGATAGTAGAGCTCTGGACAGGTTGTTATTCCATC
ATAACTAAAACCAAATCAGACACGAAACCAAAACAATACCACCGATTATA
TTCACACAACCTCGTAGCGAAACAAAAGTTATACGTTTCTTATCTATTAT
TTCTTCACACTACCAGCTACCAGCTTCATTCGAATCTTTTGTTCCATAAT
AGTAATGGTGATAGCTTAAAGTATCTGCCGCGAACGCCCACACAACTCTC
AAAAGAGCTTTGTGTGCGAGCGCCTTTTCTTGTAGACATATTCTGGTTAT
AATTTCGTAGCTCTATAAGTGGTCAGTCGATCTGTAGCAGAGCGATCTAA
CAATCTAACGTTGCTTGTCTCGTTTCATGACTTAACCACTGAACCGCAAT
CACACTTAACCGACATGTGACAGACCATTTAACGCCAGCGAGAGGTAAAT
CTTGAATTTATAATAACCACTGAGCGTGACTAACCTTTGAGTGACTCGCA
GATTTGTCACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGC
AAGGATGCACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCAT
GGATCTGATCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAAC
GAGAGGAGATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACC
GTGGAGCTGCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCT
TAGCCAGATAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCG
TGATCGGACGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGC
TCAATGGATCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGG
GCCGGTCGACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACG
ATCAGAAGAACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAAT
AAGCAAACTGTTAGCCATTAATTAAATTGTTTTTTGGTCTATTAACTATT
CATAGCATTATTATCAAACCAAACGAAATACATCACCAAGCTAGATGAAA
CGAATAATAAAGAAAGCAGCATATACACCAGGCCAGCAGTGTTTGAATCA
AGTAAAATATAATTTTAATATTTATATTAACAAACTAAATGTTATAAGCT
AGGAAAGCACATGTCCTTCGCATTCAAGACCCGATCACTTAGGACCCATA
ATGCATCATTGGAGGTGAAGAAAATCTGCTGAATGTTCTTCGATGTGATA
TATATGATTTCGTTGCCCTCGGCTGTGATGTTGGCTAGTTTGGCACATCG
TACGACAGCTCCGAATTTGGGGATAACATAGTACAATGTTCCGAAATTGT
CGATGATCATGCTGCGACTGCTGCCCAGAAGACTGCCCAAATGTTCTGTC
CACCGTACTGTATAGATCACCATCCTGGTCGGAGAGTATGAGTTCCCCTT
GAATTCCGAAGATGAAATCCACTGGCTTGATGGGAAACGATTGATTCATA
TTCTCGTACTTATTGCTCTCCAAGGATAGGCGGTGCCACGTCTGCTCCAG
GATGTCGTAGGCTAGAATTTCTGGTACCTTTCCAAGGATGAAGTAAATAT
GGCGCTCGTGCTCGCATCCCGGACTCTTGGGTCCCATTTGGACAGTCAGA
AAGTGGGTGTCATTAGCACCTATATGGTGTCCACAATCGATTCTCAATAG
CTCCGCGTTGTTACGCATCAGATCGAAGACAAACAAACGGGGTGAGCACG
TGCTGCCGGGAAATCCGATGTCCATGACCCACAGTCGACTCAGTGCATCC
ACCTGGGACCAGTGTGCCTGTTGTACCAGAGAGCAATCATCATGATCCCC
CATGGAATGAACATCGATGTGGGGAAAGACGACAGTGGGCATGGGAAAAT
AGGAAACCGGCCATTGCGCCTCGATCAAAGTGGGCGCATCGTTGCTTTCT
ACATTTACGCTGAGAAACACTCGCGAAAAGTGCATCGATAGATGACGGAC
TTTGTAGCTGGATTCGTTTAAACCAGATTCGGATAACAGCCAGGCGTCCG
TGGCCAGAATTAGACCAACAATGAGAAATCCCAAGCCGAGGACACCATGT
GTGACCATCTTTAAACGCGAATTCAGACTGAGCTTAGGGCTAGAGAACTC
TGCTTACGTTGTAAGTGCCCGTTCAAGAAGTCCACCAAAGTGTCTACATC
AGCAGTTGGGATCGGGTGTCGCCGAATATATCGGCGACCTGCATTAATGG
GGACCAGCATTGGAGTGTTTCTCTATTCACTTGTGGTCCCAAAAAAAAAA
AGCTTACCAATTTCAATCGGAGAATATCGAAATCATGACACAGTTTCCTC
TTAAAATTACCCAAAATTGGATTGTTATATTTTTCAAAATAAATCAAAGT
TAAACCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
LD01950.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RC | 3575 | CG7945-RC | 12..3573 | 1..3564 | 17720 | 99.8 | Plus |
CG7945.c | 2502 | CG7945.c | 1241..2500 | 2303..3564 | 6210 | 99.6 | Plus |
CG7945.c | 2502 | CG7945.c | 589..1241 | 1600..2252 | 3265 | 100 | Plus |
CG7945.a | 1460 | CG7945.a | 740..1392 | 1600..2252 | 3265 | 100 | Plus |
CG7945.c | 2502 | CG7945.c | 1..590 | 1..590 | 2950 | 100 | Plus |
CG7945.a | 1460 | CG7945.a | 220..720 | 634..1136 | 2460 | 99.6 | Plus |
CG7945.a | 1460 | CG7945.a | 16..223 | 62..269 | 1040 | 100 | Plus |
CG7945.a | 1460 | CG7945.a | 1392..1460 | 2303..2371 | 345 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 15512298..15514039 | 1744..1 | 8640 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 15510262..15511271 | 3554..2545 | 5035 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 15511334..15512135 | 2544..1743 | 4010 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15522360..15524101 | 1744..1 | 8655 | 99.9 | Minus |
3L | 28110227 | 3L | 15520314..15521333 | 3564..2545 | 5055 | 99.7 | Minus |
3L | 28110227 | 3L | 15521396..15522197 | 2544..1743 | 4010 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 15515460..15517201 | 1744..1 | 8665 | 99.8 | Minus |
3L | 28103327 | 3L | 15513414..15514433 | 3564..2545 | 5055 | 99.7 | Minus |
3L | 28103327 | 3L | 15514496..15515297 | 2544..1743 | 4010 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 05:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 3328..3414 | 604..521 | 121 | 63.2 | Minus |
LD01950.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:32:09 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 15510256..15511271 | 2545..3560 | 99 | <- | Minus |
chr3L | 15511334..15512133 | 1745..2544 | 96 | <- | Minus |
chr3L | 15512298..15514039 | 1..1744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 18:30:10 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 17:18:28 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 07:36:38 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:09:35 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 06:04:24 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:43:18 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1..3558 | 1..3560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:28 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1..3555 | 1..3557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:38 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-k-RA | 1..714 | 2545..3258 | 100 | <- | Minus |
yellow-k-RA | 777..1034 | 2287..2544 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:09:36 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1..3558 | 1..3560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:24 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-k-RA | 1..714 | 2545..3258 | 100 | <- | Minus |
yellow-k-RA | 777..1034 | 2287..2544 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:09 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15520318..15521333 | 2545..3560 | 99 | <- | Minus |
3L | 15521396..15522195 | 1745..2544 | 100 | <- | Minus |
3L | 15522360..15524101 | 1..1744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:09 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15520318..15521333 | 2545..3560 | 99 | <- | Minus |
3L | 15521396..15522195 | 1745..2544 | 100 | <- | Minus |
3L | 15522360..15524101 | 1..1744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:09 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15520318..15521333 | 2545..3560 | 99 | <- | Minus |
3L | 15521396..15522195 | 1745..2544 | 100 | <- | Minus |
3L | 15522360..15524101 | 1..1744 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:38 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15513418..15514433 | 2545..3560 | 99 | <- | Minus |
arm_3L | 15514496..15515295 | 1745..2544 | 100 | <- | Minus |
arm_3L | 15515460..15517201 | 1..1744 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:41:41 Download gff for
LD01950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15513418..15514433 | 2545..3560 | 99 | <- | Minus |
3L | 15514496..15515295 | 1745..2544 | 100 | <- | Minus |
3L | 15515460..15517201 | 1..1744 | 99 | | Minus |
LD01950.pep Sequence
Translation from 1692 to 2120
> LD01950.pep
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*
LD01950.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10728-PA | 353 | GF10728-PA | 212..353 | 1..142 | 697 | 91.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13543-PA | 344 | GG13543-PA | 203..344 | 1..142 | 716 | 93.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH16818-PA | 367 | GH16818-PA | 226..367 | 1..142 | 649 | 85.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 248 | CG7945-PB | 107..248 | 1..142 | 717 | 100 | Plus |
CG7945-PA | 262 | CG7945-PA | 121..262 | 1..142 | 717 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI12223-PA | 259 | GI12223-PA | 118..258 | 1..141 | 656 | 86.5 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL25595-PA | 331 | GL25595-PA | 190..331 | 1..142 | 660 | 85.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA20709-PA | 331 | GA20709-PA | 190..331 | 1..142 | 660 | 85.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24486-PA | 361 | GM24486-PA | 220..361 | 1..142 | 721 | 95.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12558-PA | 246 | GD12558-PA | 105..246 | 1..142 | 721 | 96.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ11453-PA | 332 | GJ11453-PA | 191..332 | 1..142 | 646 | 83.8 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10518-PA | 269 | GK10518-PA | 128..269 | 1..142 | 662 | 85.9 | Plus |
Dwil\GK18090-PA | 215 | GK18090-PA | 74..214 | 1..141 | 552 | 75.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22844-PA | 262 | GE22844-PA | 121..262 | 1..142 | 714 | 93 | Plus |
Dyak\GE19846-PA | 262 | GE19846-PA | 121..262 | 1..142 | 714 | 93 | Plus |
LD01950.hyp Sequence
Translation from 1692 to 2120
> LD01950.hyp
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*
LD01950.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 248 | CG7945-PB | 107..248 | 1..142 | 717 | 100 | Plus |
CG7945-PA | 262 | CG7945-PA | 121..262 | 1..142 | 717 | 100 | Plus |