Clone LD01950 Report

Search the DGRC for LD01950

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:19
Well:50
Vector:pBS SK-
Associated Gene/TranscriptCG7945-RC
Protein status:LD01950.pep: full length peptide match
Preliminary Size:3310
Sequenced Size:3609

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7945 2002-06-28 Blastp of sequenced clone
CG7945 2008-04-29 Release 5.5 accounting
CG7945 2008-08-15 Release 5.9 accounting
CG7945 2008-12-18 5.12 accounting

Clone Sequence Records

LD01950.complete Sequence

3609 bp (3609 high quality bases) assembled on 2002-06-28

GenBank Submission: AY129435

> LD01950.complete
TACAAATCCCACAATATAATGTTAAATTAATCATATTTATACTTATCTTC
ATTTAAGTAAAGCGAAATATTCGATTGACCCTCGAAGTAAACAACCCAGG
TGCTCAAAAATGAAGCTAACAAAGTTAGATTAATCGGTGTCTACGAATTA
TCTGGAAACACAAGCATTTCCCGTCATCTAACTCAAACTGCCCAACTCGA
AAAATCAACAATATTTTTGCATCGGGCCAAAGGTGCATTAAAACCGGAGC
CTCAAGTCTCGGGCGGCAGGTAATTTATTCAAGTTCAAAACAGCCACCCG
GGGATTCTCCTAGACATCGGTTGCCACAAGAAAAGAAGAAGAATTAGGCG
TAATCTTCTAGAAAATTGGTGATTTCAGCCGAGAATGTTTGAGAATTTTC
GAGGTATTTTTCGGAAACGGCGTCGCTGCGAGTCGGACACAACACCGCCG
CCACCGCCGCCGCAACCCGCCCAGGAGGCGGAGATAATAAACCGATATCC
GGAAGATATAGAAGCCGATACGCCCGAGTCCAATGATGGCTTTGACGCCT
CCTGGACCGAAGGCTCTTTTCACAGCCCACATTCAGATAGGTAATTGAAT
TCTGCGCATTCACGCTTCCTCTTCTCTCTTATTGCAGCTTCAAAGCAAAA
ACAGATAAAATTAAGCTTAAGCAACAGCATCAAACACTTCGACACCCACT
CGAAAAAAAAAGCTTAAGACATTCCAAAAAAAGTAGCCAGCAAAGCGGCT
AAAAAAAAAAATAAATAAGATAAAACCAAAACCCAAAACGAAACAGTAGG
CAGCTATCCAACCATCTTGGGTGACAAACACTTGACCGGCTTTTTGGAGG
GCGACAGGTTTAAATCAAATCTGGAGCAGCCGCAGGATATGGAAGTTGAT
GCGCCAACAACGCAGGAAACCAGTGACACTCATCATCATCACCATAGTAC
TTATCACCAGCAGCTGCATCAGATCTCGCCCAGCGATTACCACTCGGAGG
CATCCATGAATTTTGATCATTTGCAAGACCTGAGGGCCGATGCCATGGCC
TCCTCATCCCCATCCGGATCCGGAGGTGGTGGCAATGGCGGGAACAGCTC
CTACGGACTCGTCGACGATAGTAGAGCTCTGGACAGGTTGTTATTCCATC
ATAACTAAAACCAAATCAGACACGAAACCAAAACAATACCACCGATTATA
TTCACACAACCTCGTAGCGAAACAAAAGTTATACGTTTCTTATCTATTAT
TTCTTCACACTACCAGCTACCAGCTTCATTCGAATCTTTTGTTCCATAAT
AGTAATGGTGATAGCTTAAAGTATCTGCCGCGAACGCCCACACAACTCTC
AAAAGAGCTTTGTGTGCGAGCGCCTTTTCTTGTAGACATATTCTGGTTAT
AATTTCGTAGCTCTATAAGTGGTCAGTCGATCTGTAGCAGAGCGATCTAA
CAATCTAACGTTGCTTGTCTCGTTTCATGACTTAACCACTGAACCGCAAT
CACACTTAACCGACATGTGACAGACCATTTAACGCCAGCGAGAGGTAAAT
CTTGAATTTATAATAACCACTGAGCGTGACTAACCTTTGAGTGACTCGCA
GATTTGTCACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGC
AAGGATGCACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCAT
GGATCTGATCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAAC
GAGAGGAGATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACC
GTGGAGCTGCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCT
TAGCCAGATAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCG
TGATCGGACGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGC
TCAATGGATCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGG
GCCGGTCGACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACG
ATCAGAAGAACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAAT
AAGCAAACTGTTAGCCATTAATTAAATTGTTTTTTGGTCTATTAACTATT
CATAGCATTATTATCAAACCAAACGAAATACATCACCAAGCTAGATGAAA
CGAATAATAAAGAAAGCAGCATATACACCAGGCCAGCAGTGTTTGAATCA
AGTAAAATATAATTTTAATATTTATATTAACAAACTAAATGTTATAAGCT
AGGAAAGCACATGTCCTTCGCATTCAAGACCCGATCACTTAGGACCCATA
ATGCATCATTGGAGGTGAAGAAAATCTGCTGAATGTTCTTCGATGTGATA
TATATGATTTCGTTGCCCTCGGCTGTGATGTTGGCTAGTTTGGCACATCG
TACGACAGCTCCGAATTTGGGGATAACATAGTACAATGTTCCGAAATTGT
CGATGATCATGCTGCGACTGCTGCCCAGAAGACTGCCCAAATGTTCTGTC
CACCGTACTGTATAGATCACCATCCTGGTCGGAGAGTATGAGTTCCCCTT
GAATTCCGAAGATGAAATCCACTGGCTTGATGGGAAACGATTGATTCATA
TTCTCGTACTTATTGCTCTCCAAGGATAGGCGGTGCCACGTCTGCTCCAG
GATGTCGTAGGCTAGAATTTCTGGTACCTTTCCAAGGATGAAGTAAATAT
GGCGCTCGTGCTCGCATCCCGGACTCTTGGGTCCCATTTGGACAGTCAGA
AAGTGGGTGTCATTAGCACCTATATGGTGTCCACAATCGATTCTCAATAG
CTCCGCGTTGTTACGCATCAGATCGAAGACAAACAAACGGGGTGAGCACG
TGCTGCCGGGAAATCCGATGTCCATGACCCACAGTCGACTCAGTGCATCC
ACCTGGGACCAGTGTGCCTGTTGTACCAGAGAGCAATCATCATGATCCCC
CATGGAATGAACATCGATGTGGGGAAAGACGACAGTGGGCATGGGAAAAT
AGGAAACCGGCCATTGCGCCTCGATCAAAGTGGGCGCATCGTTGCTTTCT
ACATTTACGCTGAGAAACACTCGCGAAAAGTGCATCGATAGATGACGGAC
TTTGTAGCTGGATTCGTTTAAACCAGATTCGGATAACAGCCAGGCGTCCG
TGGCCAGAATTAGACCAACAATGAGAAATCCCAAGCCGAGGACACCATGT
GTGACCATCTTTAAACGCGAATTCAGACTGAGCTTAGGGCTAGAGAACTC
TGCTTACGTTGTAAGTGCCCGTTCAAGAAGTCCACCAAAGTGTCTACATC
AGCAGTTGGGATCGGGTGTCGCCGAATATATCGGCGACCTGCATTAATGG
GGACCAGCATTGGAGTGTTTCTCTATTCACTTGTGGTCCCAAAAAAAAAA
AGCTTACCAATTTCAATCGGAGAATATCGAAATCATGACACAGTTTCCTC
TTAAAATTACCCAAAATTGGATTGTTATATTTTTCAAAATAAATCAAAGT
TAAACCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

LD01950.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RC 3575 CG7945-RC 12..3573 1..3564 17720 99.8 Plus
CG7945.c 2502 CG7945.c 1241..2500 2303..3564 6210 99.6 Plus
CG7945.c 2502 CG7945.c 589..1241 1600..2252 3265 100 Plus
CG7945.a 1460 CG7945.a 740..1392 1600..2252 3265 100 Plus
CG7945.c 2502 CG7945.c 1..590 1..590 2950 100 Plus
CG7945.a 1460 CG7945.a 220..720 634..1136 2460 99.6 Plus
CG7945.a 1460 CG7945.a 16..223 62..269 1040 100 Plus
CG7945.a 1460 CG7945.a 1392..1460 2303..2371 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15512298..15514039 1744..1 8640 99.8 Minus
chr3L 24539361 chr3L 15510262..15511271 3554..2545 5035 99.9 Minus
chr3L 24539361 chr3L 15511334..15512135 2544..1743 4010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15522360..15524101 1744..1 8655 99.9 Minus
3L 28110227 3L 15520314..15521333 3564..2545 5055 99.7 Minus
3L 28110227 3L 15521396..15522197 2544..1743 4010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15515460..15517201 1744..1 8665 99.8 Minus
3L 28103327 3L 15513414..15514433 3564..2545 5055 99.7 Minus
3L 28103327 3L 15514496..15515297 2544..1743 4010 100 Minus
Blast to na_te.dros performed 2019-03-16 05:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 3328..3414 604..521 121 63.2 Minus

LD01950.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:32:09 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15510256..15511271 2545..3560 99 <- Minus
chr3L 15511334..15512133 1745..2544 96 <- Minus
chr3L 15512298..15514039 1..1744 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 18:30:10 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 17:18:28 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 07:36:38 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:09:35 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 06:04:24 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:43:18 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1..3558 1..3560 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:28 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1..3555 1..3557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:38 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..714 2545..3258 100 <- Minus
yellow-k-RA 777..1034 2287..2544 100   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:09:36 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1..3558 1..3560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:24 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..714 2545..3258 100 <- Minus
yellow-k-RA 777..1034 2287..2544 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:09 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520318..15521333 2545..3560 99 <- Minus
3L 15521396..15522195 1745..2544 100 <- Minus
3L 15522360..15524101 1..1744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:09 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520318..15521333 2545..3560 99 <- Minus
3L 15521396..15522195 1745..2544 100 <- Minus
3L 15522360..15524101 1..1744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:09 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520318..15521333 2545..3560 99 <- Minus
3L 15521396..15522195 1745..2544 100 <- Minus
3L 15522360..15524101 1..1744 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:38 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15513418..15514433 2545..3560 99 <- Minus
arm_3L 15514496..15515295 1745..2544 100 <- Minus
arm_3L 15515460..15517201 1..1744 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:41:41 Download gff for LD01950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15513418..15514433 2545..3560 99 <- Minus
3L 15514496..15515295 1745..2544 100 <- Minus
3L 15515460..15517201 1..1744 99   Minus

LD01950.pep Sequence

Translation from 1692 to 2120

> LD01950.pep
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*

LD01950.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10728-PA 353 GF10728-PA 212..353 1..142 697 91.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13543-PA 344 GG13543-PA 203..344 1..142 716 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16818-PA 367 GH16818-PA 226..367 1..142 649 85.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 107..248 1..142 717 100 Plus
CG7945-PA 262 CG7945-PA 121..262 1..142 717 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12223-PA 259 GI12223-PA 118..258 1..141 656 86.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25595-PA 331 GL25595-PA 190..331 1..142 660 85.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20709-PA 331 GA20709-PA 190..331 1..142 660 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24486-PA 361 GM24486-PA 220..361 1..142 721 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12558-PA 246 GD12558-PA 105..246 1..142 721 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11453-PA 332 GJ11453-PA 191..332 1..142 646 83.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10518-PA 269 GK10518-PA 128..269 1..142 662 85.9 Plus
Dwil\GK18090-PA 215 GK18090-PA 74..214 1..141 552 75.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22844-PA 262 GE22844-PA 121..262 1..142 714 93 Plus
Dyak\GE19846-PA 262 GE19846-PA 121..262 1..142 714 93 Plus

LD01950.hyp Sequence

Translation from 1692 to 2120

> LD01950.hyp
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*

LD01950.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 107..248 1..142 717 100 Plus
CG7945-PA 262 CG7945-PA 121..262 1..142 717 100 Plus