BDGP Sequence Production Resources |
Search the DGRC for LD02044
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 20 |
Well: | 44 |
Vector: | pBS SK- |
Associated Gene/Transcript | nst-RA |
Protein status: | LD02044.pep: gold |
Preliminary Size: | 2172 |
Sequenced Size: | 2228 |
Gene | Date | Evidence |
---|---|---|
CG10627 | 2001-01-01 | Release 2 assignment |
CG10627 | 2001-11-09 | Blastp of sequenced clone |
CG10627 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10627 | 2008-04-29 | Release 5.5 accounting |
CG10627 | 2008-08-15 | Release 5.9 accounting |
CG10627 | 2008-12-18 | 5.12 accounting |
2228 bp (2228 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069309
> LD02044.complete AAACGACGGTCACACCCGCCTGCACACATCTGTGGAATTGTTAAATTTCG AAAGTCCGGAAAAACCGGACGGAACCTTTCACCTCGCTCTGGACCAGTGG CACCGCCCTCGAGTATCGCAAGATGTCTATTAACCTGCGCACCGTCTACG CCTTCGCCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATAT GGAACAGCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTT CCGCATGGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCG TCATCGGTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGA GTGAAGCTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGC GATAGCCACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGG TGGCCAAGATCATAAAGGACAACAATATCGATGTGACGACCAGTTCCCAG GTGTTTGTGGGCATGGACAACAGATACCACAGTCCGCGGCTGCTGAAAGC GGTGGCCGATGGCGTGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCA TTGTGACCACACCCATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAG GAGGCATACGGCAAGCCCACCGAGGAGGGTTACTACGACAAGCTGATCAA GGCATTCGAACTGCTGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCA ATAGCATCATCTACGATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTG CAGTTCATCAAGCGCATGAAGGGCACCCTCAACGTGACGGTCATTAATCA GGGCATCGGTGTCGGCAAGATCAACGAGGACTGCGGCGCCGACTACGTGA AGGTGCAGCAAAGTCCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTAC ACGAGATGCGTCAGCGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTT TACCGACGACAAGGGTGAGTTCCATCTGCTCGATGGCGATCGCATAGCCA CCCTAATCGCCGGCTATCTCATGGAACTGGTCACACAATCCGAGATTAGC CTACGGCTGGGCCTGGTGCAAACTGCCTACGCCAATGGTGCATCCACGGA CTACATAGTGGACCAGCTGAAGTTTCCCGTTTCGTGCGTACCCACGGGCG TGAAGCACCTGCACCACAAGGCCTTGGAGTACGACATTGGTGTTTACTTC GAGGCGAATGGCCACGGAACGATTGTGTTCAGTGACAATGCTAAGGCGAC GATTGCCCAGGTGGCCCAAACTAAGGAGAGTGCCAAGACGTTGCTGCTGC TCATCGATCTTATCAACGAGACCGTGGGCGATGCCATATCCGACATGCTG CTGGTGGAAACAATCCTAAATCACAAGGGCTGGGATGTCCAGGATTGGAT CTCGTCGTACAACGATCTGCCCAACCGACAGCTAAAGGTGAAGGTGCAGG ATCGCAATGTCATCGAGACGACGGATGCGGAACGCGTGTGCGTAAAGCCC GAAGGTCTGCAGACGGAAATCAACCAGGTGGTGGCGAAATACAAGCGGGG ACGCTCCTTCGTTCGCCCCTCGGGCACCGAGGATGTGGTGCGCGTCTATG CCGAAGCAGCCACCAAAGAGGACACCGATAATCTTGCCTACGAAGTGGGT CTGCTGGTCCAGAAACTGGCCGGCGGAGTTGGCCCCCCATTGACGAAGCC CAACAGCAGTGCCCACCTGTAGAGCGGAATGACGAACTAACCTCTCACGG GAATCGACAATTGACACAGATCCTGGATGGAGCAATAAATCTCTTTACTC TAAGGTGCTCAATAACTTAAAAAAAAAACAACTTAACTCTCAAACGCATT TATTCTGCAAATGTTCACTGTCTTTTGTGTTCTAAAGATGACATATTTTT TGCCATTATTTATAAAGTTCTTTTCAAGTTTATTTATACATATGTACATT GTGAAAGTTGCAATTTTATGTCCTTCGCTATTTTGTAATTGAAGAATTTA ATGAAAATGCAACCGCTACGTTGATTTTTTTGTTGAGCTGCTAGCGGTAA CTATTGAAATTATAAAAGAATTGATAGTAGAGATTAATGAACCTAATCAA GTTTGTATTGCTATTTTCTATAAAAGTATTTTTTAACCAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12518400..12519847 | 1671..224 | 7195 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 12517816..12518333 | 2186..1669 | 2545 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 12520532..12520755 | 224..1 | 1120 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12527801..12529248 | 1671..224 | 7240 | 100 | Minus |
3L | 28110227 | 3L | 12527213..12527734 | 2190..1669 | 2595 | 99.8 | Minus |
3L | 28110227 | 3L | 12529934..12530157 | 224..1 | 1120 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12520901..12522348 | 1671..224 | 7240 | 100 | Minus |
3L | 28103327 | 3L | 12520313..12520834 | 2190..1669 | 2595 | 99.8 | Minus |
3L | 28103327 | 3L | 12523034..12523257 | 224..1 | 1120 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
invader3 | 5484 | invader3 INVADER3 5484bp | 5090..5146 | 1999..1943 | 114 | 71.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12517814..12518331 | 1671..2188 | 99 | <- | Minus |
chr3L | 12518401..12519847 | 224..1670 | 99 | <- | Minus |
chr3L | 12520533..12520755 | 1..223 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10627-RA | 1..1650 | 123..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10627-RA | 1..1650 | 123..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nst-RA | 1..1650 | 123..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10627-RA | 1..1650 | 123..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nst-RA | 1..1650 | 123..1772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10627-RA | 48..2235 | 1..2188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10627-RA | 48..2235 | 1..2188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nst-RA | 15..2202 | 1..2188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10627-RA | 48..2235 | 1..2188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nst-RA | 15..2202 | 1..2188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12527215..12527732 | 1671..2188 | 99 | <- | Minus |
3L | 12527802..12529248 | 224..1670 | 100 | <- | Minus |
3L | 12529935..12530157 | 1..223 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12527215..12527732 | 1671..2188 | 99 | <- | Minus |
3L | 12527802..12529248 | 224..1670 | 100 | <- | Minus |
3L | 12529935..12530157 | 1..223 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12527215..12527732 | 1671..2188 | 99 | <- | Minus |
3L | 12527802..12529248 | 224..1670 | 100 | <- | Minus |
3L | 12529935..12530157 | 1..223 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12520315..12520832 | 1671..2188 | 99 | <- | Minus |
arm_3L | 12520902..12522348 | 224..1670 | 100 | <- | Minus |
arm_3L | 12523035..12523257 | 1..223 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12520315..12520832 | 1671..2188 | 99 | <- | Minus |
3L | 12520902..12522348 | 224..1670 | 100 | <- | Minus |
3L | 12523035..12523257 | 1..223 | 100 | Minus |
Translation from 122 to 1771
> LD02044.pep MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24006-PA | 547 | GF24006-PA | 1..547 | 1..549 | 2685 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13815-PA | 547 | GG13815-PA | 1..547 | 1..549 | 2820 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16842-PA | 547 | GH16842-PA | 1..547 | 1..549 | 2512 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nst-PA | 549 | CG10627-PA | 1..549 | 1..549 | 2815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13061-PA | 548 | GI13061-PA | 1..548 | 1..549 | 2495 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24942-PA | 547 | GL24942-PA | 1..547 | 1..549 | 2376 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10449-PA | 547 | GA10449-PA | 1..547 | 1..549 | 2598 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24643-PA | 258 | GM24643-PA | 1..249 | 1..249 | 1315 | 98.8 | Plus |
Dsec\GM24644-PA | 125 | GM24644-PA | 1..125 | 425..549 | 657 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12708-PA | 549 | GD12708-PA | 1..549 | 1..549 | 2907 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13809-PA | 547 | GJ13809-PA | 1..547 | 1..549 | 2513 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12616-PA | 549 | GK12616-PA | 1..549 | 1..549 | 2514 | 84.4 | Plus |
Dwil\GK23090-PA | 549 | GK23090-PA | 1..549 | 1..549 | 2490 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20109-PA | 547 | GE20109-PA | 1..547 | 1..549 | 2823 | 96.5 | Plus |
Translation from 122 to 1771
> LD02044.hyp MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nst-PA | 549 | CG10627-PA | 1..549 | 1..549 | 2815 | 100 | Plus |