Clone LD02044 Report

Search the DGRC for LD02044

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:20
Well:44
Vector:pBS SK-
Associated Gene/Transcriptnst-RA
Protein status:LD02044.pep: gold
Preliminary Size:2172
Sequenced Size:2228

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10627 2001-01-01 Release 2 assignment
CG10627 2001-11-09 Blastp of sequenced clone
CG10627 2003-01-01 Sim4 clustering to Release 3
CG10627 2008-04-29 Release 5.5 accounting
CG10627 2008-08-15 Release 5.9 accounting
CG10627 2008-12-18 5.12 accounting

Clone Sequence Records

LD02044.complete Sequence

2228 bp (2228 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069309

> LD02044.complete
AAACGACGGTCACACCCGCCTGCACACATCTGTGGAATTGTTAAATTTCG
AAAGTCCGGAAAAACCGGACGGAACCTTTCACCTCGCTCTGGACCAGTGG
CACCGCCCTCGAGTATCGCAAGATGTCTATTAACCTGCGCACCGTCTACG
CCTTCGCCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATAT
GGAACAGCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTT
CCGCATGGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCG
TCATCGGTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGA
GTGAAGCTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGC
GATAGCCACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGG
TGGCCAAGATCATAAAGGACAACAATATCGATGTGACGACCAGTTCCCAG
GTGTTTGTGGGCATGGACAACAGATACCACAGTCCGCGGCTGCTGAAAGC
GGTGGCCGATGGCGTGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCA
TTGTGACCACACCCATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAG
GAGGCATACGGCAAGCCCACCGAGGAGGGTTACTACGACAAGCTGATCAA
GGCATTCGAACTGCTGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCA
ATAGCATCATCTACGATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTG
CAGTTCATCAAGCGCATGAAGGGCACCCTCAACGTGACGGTCATTAATCA
GGGCATCGGTGTCGGCAAGATCAACGAGGACTGCGGCGCCGACTACGTGA
AGGTGCAGCAAAGTCCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTAC
ACGAGATGCGTCAGCGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTT
TACCGACGACAAGGGTGAGTTCCATCTGCTCGATGGCGATCGCATAGCCA
CCCTAATCGCCGGCTATCTCATGGAACTGGTCACACAATCCGAGATTAGC
CTACGGCTGGGCCTGGTGCAAACTGCCTACGCCAATGGTGCATCCACGGA
CTACATAGTGGACCAGCTGAAGTTTCCCGTTTCGTGCGTACCCACGGGCG
TGAAGCACCTGCACCACAAGGCCTTGGAGTACGACATTGGTGTTTACTTC
GAGGCGAATGGCCACGGAACGATTGTGTTCAGTGACAATGCTAAGGCGAC
GATTGCCCAGGTGGCCCAAACTAAGGAGAGTGCCAAGACGTTGCTGCTGC
TCATCGATCTTATCAACGAGACCGTGGGCGATGCCATATCCGACATGCTG
CTGGTGGAAACAATCCTAAATCACAAGGGCTGGGATGTCCAGGATTGGAT
CTCGTCGTACAACGATCTGCCCAACCGACAGCTAAAGGTGAAGGTGCAGG
ATCGCAATGTCATCGAGACGACGGATGCGGAACGCGTGTGCGTAAAGCCC
GAAGGTCTGCAGACGGAAATCAACCAGGTGGTGGCGAAATACAAGCGGGG
ACGCTCCTTCGTTCGCCCCTCGGGCACCGAGGATGTGGTGCGCGTCTATG
CCGAAGCAGCCACCAAAGAGGACACCGATAATCTTGCCTACGAAGTGGGT
CTGCTGGTCCAGAAACTGGCCGGCGGAGTTGGCCCCCCATTGACGAAGCC
CAACAGCAGTGCCCACCTGTAGAGCGGAATGACGAACTAACCTCTCACGG
GAATCGACAATTGACACAGATCCTGGATGGAGCAATAAATCTCTTTACTC
TAAGGTGCTCAATAACTTAAAAAAAAAACAACTTAACTCTCAAACGCATT
TATTCTGCAAATGTTCACTGTCTTTTGTGTTCTAAAGATGACATATTTTT
TGCCATTATTTATAAAGTTCTTTTCAAGTTTATTTATACATATGTACATT
GTGAAAGTTGCAATTTTATGTCCTTCGCTATTTTGTAATTGAAGAATTTA
ATGAAAATGCAACCGCTACGTTGATTTTTTTGTTGAGCTGCTAGCGGTAA
CTATTGAAATTATAAAAGAATTGATAGTAGAGATTAATGAACCTAATCAA
GTTTGTATTGCTATTTTCTATAAAAGTATTTTTTAACCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD02044.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10627.a 2530 CG10627.a 292..2481 1..2190 10935 99.9 Plus
CG10627-RA 2346 CG10627-RA 108..2297 1..2190 10935 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12518400..12519847 1671..224 7195 99.8 Minus
chr3L 24539361 chr3L 12517816..12518333 2186..1669 2545 99.4 Minus
chr3L 24539361 chr3L 12520532..12520755 224..1 1120 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12527801..12529248 1671..224 7240 100 Minus
3L 28110227 3L 12527213..12527734 2190..1669 2595 99.8 Minus
3L 28110227 3L 12529934..12530157 224..1 1120 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12520901..12522348 1671..224 7240 100 Minus
3L 28103327 3L 12520313..12520834 2190..1669 2595 99.8 Minus
3L 28103327 3L 12523034..12523257 224..1 1120 100 Minus
Blast to na_te.dros performed 2019-03-16 09:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 5090..5146 1999..1943 114 71.2 Minus

LD02044.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:43:28 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12517814..12518331 1671..2188 99 <- Minus
chr3L 12518401..12519847 224..1670 99 <- Minus
chr3L 12520533..12520755 1..223 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:30:16 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 1..1650 123..1772 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:16 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 1..1650 123..1772 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:55 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
nst-RA 1..1650 123..1772 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:53 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 1..1650 123..1772 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:21 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
nst-RA 1..1650 123..1772 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:44 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 48..2235 1..2188 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:16 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 48..2235 1..2188 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:55 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
nst-RA 15..2202 1..2188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:53 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 48..2235 1..2188 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:21 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
nst-RA 15..2202 1..2188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:28 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12527215..12527732 1671..2188 99 <- Minus
3L 12527802..12529248 224..1670 100 <- Minus
3L 12529935..12530157 1..223 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:28 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12527215..12527732 1671..2188 99 <- Minus
3L 12527802..12529248 224..1670 100 <- Minus
3L 12529935..12530157 1..223 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:28 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12527215..12527732 1671..2188 99 <- Minus
3L 12527802..12529248 224..1670 100 <- Minus
3L 12529935..12530157 1..223 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:55 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12520315..12520832 1671..2188 99 <- Minus
arm_3L 12520902..12522348 224..1670 100 <- Minus
arm_3L 12523035..12523257 1..223 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:05 Download gff for LD02044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12520315..12520832 1671..2188 99 <- Minus
3L 12520902..12522348 224..1670 100 <- Minus
3L 12523035..12523257 1..223 100   Minus

LD02044.pep Sequence

Translation from 122 to 1771

> LD02044.pep
MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT
LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN
VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA
LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN
GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI
NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF
HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK
FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT
KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP
NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS
GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHL*

LD02044.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24006-PA 547 GF24006-PA 1..547 1..549 2685 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13815-PA 547 GG13815-PA 1..547 1..549 2820 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16842-PA 547 GH16842-PA 1..547 1..549 2512 84.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
nst-PA 549 CG10627-PA 1..549 1..549 2815 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13061-PA 548 GI13061-PA 1..548 1..549 2495 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24942-PA 547 GL24942-PA 1..547 1..549 2376 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10449-PA 547 GA10449-PA 1..547 1..549 2598 87.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24643-PA 258 GM24643-PA 1..249 1..249 1315 98.8 Plus
Dsec\GM24644-PA 125 GM24644-PA 1..125 425..549 657 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12708-PA 549 GD12708-PA 1..549 1..549 2907 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13809-PA 547 GJ13809-PA 1..547 1..549 2513 84.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12616-PA 549 GK12616-PA 1..549 1..549 2514 84.4 Plus
Dwil\GK23090-PA 549 GK23090-PA 1..549 1..549 2490 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20109-PA 547 GE20109-PA 1..547 1..549 2823 96.5 Plus

LD02044.hyp Sequence

Translation from 122 to 1771

> LD02044.hyp
MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT
LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN
VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA
LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN
GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI
NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF
HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK
FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT
KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP
NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS
GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHL*

LD02044.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
nst-PA 549 CG10627-PA 1..549 1..549 2815 100 Plus