Clone LD02192 Report

Search the DGRC for LD02192

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:21
Well:92
Vector:pBS SK-
Associated Gene/TranscriptCG4570-RA
Protein status:LD02192.pep: gold
Preliminary Size:1450
Sequenced Size:1294

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4570 2001-01-01 Release 2 assignment
CG4570 2001-10-10 Blastp of sequenced clone
CG4570 2003-01-01 Sim4 clustering to Release 3
CG4570 2008-04-29 Release 5.5 accounting
CG4570 2008-08-15 Release 5.9 accounting
CG4570 2008-12-18 5.12 accounting

Clone Sequence Records

LD02192.complete Sequence

1294 bp (1294 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061051

> LD02192.complete
CGAATAACGGAATGGCCGCCAAAGACAAAAAGGGACGCCAACTGAATTTA
CCTGTAATGACGCCGTAATCCCGCCAATTGCAGCTTGCTCGCCATAAAAC
TACGGTCCAGACTATCGTCAAAATCGGTGCAAAAACTTTTACCTGCCAGG
TGCATAAAACGCCCATCGAGGATTCGATTTACCATCATTGGTATTGTGAA
ACTCGAGGTGTACAGAAGTGATTCGAAATGGTTCTCGCTCCCGAAGTTCG
AAGTATTGTGAAGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCC
AGATCCTGGAGTGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGT
GAGCTGCTCGAGGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAA
AACAGCGGCGCCCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATG
TTGGCAGACCCAAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTG
AGCGACAATCCGCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCG
ACACGGCATAGAGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGA
TTCGCTCCAAAGGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAG
CCCAGCACTTTCGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTG
GGCCACCGCCCATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCA
ACATGGACGATCTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATC
TTCCTTGACTCGCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAA
TCTCCTCGAGCAATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGG
CGCCCAAAAATGTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCAC
AGCGACCAGGACATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGAC
GTGGCGGGTCTCAGCGGTCCTCCGCAACGGCGGGGATCAGACCGAGTTCT
GCTAGCCAAGCTGTGGATTCCAATCGCACCCTGATTCTTGAATGTTGTAT
TGAAAATAACGACGTTCATGATCTTGTTTAATTTGACATATTATTAAGTT
TGTAGTGGCCATATAATGTACATGGTACACTCTGATTAGATTCGCGGCGT
AGGATTAAATATCTTCATTTTTTGAAACTATAACTATAAAAAAACATATA
CATTTTAATAAAGTGTAAAACAATATAAAAAAAAAAAAAAAAAA

LD02192.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 1284 CG4570-RA 1..1278 1..1278 6390 100 Plus
CG14694-RA 1832 CG14694-RA 1678..1832 1278..1124 775 100 Minus
CG14694.b 2083 CG14694.b 1929..2083 1278..1124 775 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6682329..6683604 1..1276 6380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10856791..10858068 1..1278 6390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10597622..10598899 1..1278 6390 100 Plus
Blast to na_te.dros performed 2019-03-15 11:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 1529..1600 1276..1205 117 62.5 Minus

LD02192.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:55:01 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6682329..6683604 1..1276 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:30:23 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..828 228..1055 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:31 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..828 228..1055 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:02 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..828 228..1055 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:17 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..828 228..1055 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:44:45 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..828 228..1055 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:21 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..1276 1..1276 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:31 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..1276 1..1276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:02 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:17 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..1276 1..1276 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:45 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..1260 17..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:01 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10856791..10858066 1..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:01 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10856791..10858066 1..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:01 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10856791..10858066 1..1276 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:02 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6682513..6683788 1..1276 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:09 Download gff for LD02192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10597622..10598897 1..1276 100   Plus

LD02192.hyp Sequence

Translation from 227 to 1054

> LD02192.hyp
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFC*

LD02192.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 275 CG4570-PA 1..275 1..275 1420 100 Plus

LD02192.pep Sequence

Translation from 227 to 1054

> LD02192.pep
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFC*

LD02192.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23021-PA 284 GF23021-PA 1..284 1..275 1055 73.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17781-PA 275 GG17781-PA 1..275 1..275 1367 93.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 275 CG4570-PA 1..275 1..275 1420 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23458-PA 247 GL23458-PA 1..247 1..274 765 57.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18266-PA 247 GA18266-PA 1..247 1..274 773 57.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23908-PA 275 GM23908-PA 1..275 1..275 1417 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18720-PA 275 GD18720-PA 1..275 1..275 1423 96.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15215-PA 242 GK15215-PA 13..242 19..274 633 48.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26058-PA 275 GE26058-PA 1..275 1..275 1359 92.7 Plus