Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD02192.complete Sequence
1294 bp (1294 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061051
> LD02192.complete
CGAATAACGGAATGGCCGCCAAAGACAAAAAGGGACGCCAACTGAATTTA
CCTGTAATGACGCCGTAATCCCGCCAATTGCAGCTTGCTCGCCATAAAAC
TACGGTCCAGACTATCGTCAAAATCGGTGCAAAAACTTTTACCTGCCAGG
TGCATAAAACGCCCATCGAGGATTCGATTTACCATCATTGGTATTGTGAA
ACTCGAGGTGTACAGAAGTGATTCGAAATGGTTCTCGCTCCCGAAGTTCG
AAGTATTGTGAAGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCC
AGATCCTGGAGTGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGT
GAGCTGCTCGAGGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAA
AACAGCGGCGCCCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATG
TTGGCAGACCCAAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTG
AGCGACAATCCGCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCG
ACACGGCATAGAGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGA
TTCGCTCCAAAGGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAG
CCCAGCACTTTCGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTG
GGCCACCGCCCATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCA
ACATGGACGATCTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATC
TTCCTTGACTCGCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAA
TCTCCTCGAGCAATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGG
CGCCCAAAAATGTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCAC
AGCGACCAGGACATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGAC
GTGGCGGGTCTCAGCGGTCCTCCGCAACGGCGGGGATCAGACCGAGTTCT
GCTAGCCAAGCTGTGGATTCCAATCGCACCCTGATTCTTGAATGTTGTAT
TGAAAATAACGACGTTCATGATCTTGTTTAATTTGACATATTATTAAGTT
TGTAGTGGCCATATAATGTACATGGTACACTCTGATTAGATTCGCGGCGT
AGGATTAAATATCTTCATTTTTTGAAACTATAACTATAAAAAAACATATA
CATTTTAATAAAGTGTAAAACAATATAAAAAAAAAAAAAAAAAA
LD02192.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-RA | 1284 | CG4570-RA | 1..1278 | 1..1278 | 6390 | 100 | Plus |
CG14694-RA | 1832 | CG14694-RA | 1678..1832 | 1278..1124 | 775 | 100 | Minus |
CG14694.b | 2083 | CG14694.b | 1929..2083 | 1278..1124 | 775 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 6682329..6683604 | 1..1276 | 6380 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10856791..10858068 | 1..1278 | 6390 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 10597622..10598899 | 1..1278 | 6390 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 11:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tc3 | 1743 | Tc3 TC3 1743bp | 1529..1600 | 1276..1205 | 117 | 62.5 | Minus |
LD02192.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:55:01 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 6682329..6683604 | 1..1276 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:30:23 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..828 | 228..1055 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:31 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..828 | 228..1055 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:02 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..828 | 228..1055 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:17 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..828 | 228..1055 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:44:45 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..828 | 228..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:21 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..1276 | 1..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:31 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..1276 | 1..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:02 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:17 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..1276 | 1..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:45 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:01 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10856791..10858066 | 1..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:01 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10856791..10858066 | 1..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:01 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10856791..10858066 | 1..1276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:02 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6682513..6683788 | 1..1276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:09 Download gff for
LD02192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10597622..10598897 | 1..1276 | 100 | | Plus |
LD02192.hyp Sequence
Translation from 227 to 1054
> LD02192.hyp
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFC*
LD02192.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-PA | 275 | CG4570-PA | 1..275 | 1..275 | 1420 | 100 | Plus |
LD02192.pep Sequence
Translation from 227 to 1054
> LD02192.pep
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFC*
LD02192.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23021-PA | 284 | GF23021-PA | 1..284 | 1..275 | 1055 | 73.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17781-PA | 275 | GG17781-PA | 1..275 | 1..275 | 1367 | 93.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-PA | 275 | CG4570-PA | 1..275 | 1..275 | 1420 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL23458-PA | 247 | GL23458-PA | 1..247 | 1..274 | 765 | 57.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA18266-PA | 247 | GA18266-PA | 1..247 | 1..274 | 773 | 57.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM23908-PA | 275 | GM23908-PA | 1..275 | 1..275 | 1417 | 96.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18720-PA | 275 | GD18720-PA | 1..275 | 1..275 | 1423 | 96.7 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK15215-PA | 242 | GK15215-PA | 13..242 | 19..274 | 633 | 48.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE26058-PA | 275 | GE26058-PA | 1..275 | 1..275 | 1359 | 92.7 | Plus |