Clone LD02291 Report

Search the DGRC for LD02291

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:22
Well:91
Vector:pBS SK-
Associated Gene/TranscriptkappaB-Ras-RA
Protein status:LD02291.pep: gold
Preliminary Size:1928
Sequenced Size:1879

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1669 2001-01-01 Release 2 assignment
CG1672 2001-01-01 Release 2 assignment
CG1669 2001-10-10 Blastp of sequenced clone
kappaB-Ras 2008-04-29 Release 5.5 accounting
kappaB-Ras 2008-08-15 Release 5.9 accounting
CG30503 2008-08-15 Release 5.9 accounting
CG30503 2008-12-18 5.12 accounting
kappaB-Ras 2008-12-18 5.12 accounting

Clone Sequence Records

LD02291.complete Sequence

1879 bp (1879 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061054

> LD02291.complete
TTTTGTTTATTTTTTTGGGTCCCAATTTCTCCTGCTGGAATAATGCTAAA
TGCCAAGATCGGGAAGGTCGGCAAGGTACTGGTGTGCGGGATGAAGGGCG
TGGGCAAGACGGCGCTGATAGAGCAGCTGGTCTACGGCCACGTCAATCCC
GAAACGGAACTGCATCCAACCATTGAGGATATCTACGTGGCCAGCGTGGA
TACAGGCAGGGGCGGAGCCCGAGAGACCCTGCGCATCTACGACACGGCCG
GATTGCAGGGCGAGCAGCAGCAGCTGCCACGCCACTACCTTCAGTTTCCA
GATGCATTCGTTCTGGTCTACGATCCCATGGATCCGCGCAGCCTTGACAT
GCTGGCCGACATCAAGGCTGACATTGAGAAGCACAAGGAGAAGAAGGAGA
TTCCCGTTGTGGTGCTGGCCAACGTGAGGGCACGAGCAGCCCCAAATCCC
GTCGAGAAGGTCATGGACCGCGCCAACATCTGGTGCCAGCGAGAGCGCAT
AAAGCACTACACGGTGAACGCCATGGAGCGTCCCTCCCTCTACGAGCCAT
TCACCACGCTCTGCGCCCGGCTGCACCCAATGCAGACGAAGAGCACGTTC
CCTCAGCTGCGCCAAGTTATGCAGAACCGGCAGAAGAGCGAGGCTTAGCT
GTTTTGAACGGACGAAAGGGAAGAGATATAATTTAAGTTTTATTCGGGAG
TGTCCCAATAATCTCCGATACTTAACAGTAGCTATGAATGCCACAGATTT
GGCTTTAAGTTCAAGAGATCCTTGGGATCTCCCCAATCGTACTCGTATTG
ATCCATTTAGAGTCTACTTGCCTTGTATTAACTGTTGTGCTTTAATGTGG
GCCAGAGCCCAAGCCACTTGTACTTATGTCTCTTTGTGTGTGTCCAATTG
TATCTACTATTTATTACACCGACATGTCTTCTCTCATTCCGCGAGAATTA
AGCGTAATCAGTATTCACTGCTCAATCGCAGCTCAAATGGCGCGTAGTGA
TTAAATAACCATGCCGAAATTCTGCTCTACGGCAATCCCCTTGGATCAGT
CGTCTGCAAGCCCCTTCCTCGAGCGCAATGCTTTCGCGTGCCGCTTTTCT
TACTGTTCTCCTAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGA
GCATTACAGTTCCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCC
AACTACGATGACCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGC
GCACGACAACTGTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCC
TGAGAAACGACGGGTTTTTCCCCATGTAAGCGTGGATTCCATAGCACCCA
TGCTGATCTTGGGATCAATAATCGTGCGCTCCCCGCAGATTCTCGTGTGC
CTGCGAGTCGGCCTTCCGGAACTGCCTCACCGCTCTGCGAAACGGACACT
CCCTGGCTCTTGGCAAAATCTACTTCAACACCAAGGAGGTGTGCTTTGGC
TACGGGCATCCCATCGTTTCCTGCCAGGAGAAGCAGGCCGACCTGTTCGA
GACACGATGTCTCAGCTACCGAGTGGACGAAGGTCAGCCGCAGCGCTGGC
AGTTCTACGACTTGGCCCTCTACACACACGTAAGCGGCAGCGAGGAGGAC
TCCCGAGATTGAACTTCGACGTCCGGCGATAAGCCCTCAATTGTTTACAA
AACAGATTGTGCGGGGAGCGAAACCTAATGTGATTAGGATTTTGACGGTA
GGTTATTTGTGTAATAAATTTTCGAAGCTTAAGGCTAAGTAGCCTGGAAT
TATATTAAAAACTGAATTCGGAGGCTCAATTAAAGTTCAAAATGATCAAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD02291.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-RA 1878 kappaB-Ras-RA 25..1878 1..1854 9270 100 Plus
kappaB-Ras-RB 1815 kappaB-Ras-RB 25..1349 1..1325 6625 100 Plus
CG30503-RB 1815 CG30503-RB 25..1349 1..1325 6625 100 Plus
kappaB-Ras-RB 1815 kappaB-Ras-RB 1350..1815 1389..1854 2330 100 Plus
CG30503-RB 1815 CG30503-RB 1350..1815 1389..1854 2330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3331178..3332872 1850..156 8475 100 Minus
chr2R 21145070 chr2R 3332935..3333091 157..1 785 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7443820..7445518 1854..156 8495 100 Minus
2R 25286936 2R 7445581..7445737 157..1 785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7445019..7446717 1854..156 8495 100 Minus
2R 25260384 2R 7446780..7446936 157..1 785 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:17:09 has no hits.

LD02291.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:17:59 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3331178..3332871 157..1850 100 <- Minus
chr2R 3332936..3333091 1..156 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:30:33 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1..606 43..648 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:25 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1..606 43..648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:42:16 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 1..606 43..648 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:23 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1..606 43..648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:43:16 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 1..606 43..648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:21 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 25..1874 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:25 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 25..1874 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:42:16 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 56..1905 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:23 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 25..1874 1..1850 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:43:16 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 56..1905 1..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:59 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7443824..7445517 157..1850 100 <- Minus
2R 7445582..7445737 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:59 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7443824..7445517 157..1850 100 <- Minus
2R 7445582..7445737 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:59 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7443824..7445517 157..1850 100 <- Minus
2R 7445582..7445737 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:42:16 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331329..3333022 157..1850 100 <- Minus
arm_2R 3333087..3333242 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:34 Download gff for LD02291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7446781..7446936 1..156 100   Minus
2R 7445023..7446716 157..1850 100 <- Minus

LD02291.hyp Sequence

Translation from 0 to 647

> LD02291.hyp
FCLFFWVPISPAGIMLNAKIGKVGKVLVCGMKGVGKTALIEQLVYGHVNP
ETELHPTIEDIYVASVDTGRGGARETLRIYDTAGLQGEQQQLPRHYLQFP
DAFVLVYDPMDPRSLDMLADIKADIEKHKEKKEIPVVVLANVRARAAPNP
VEKVMDRANIWCQRERIKHYTVNAMERPSLYEPFTTLCARLHPMQTKSTF
PQLRQVMQNRQKSEA*

LD02291.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-PB 201 CG1669-PB 1..201 15..215 1047 100 Plus
kappaB-Ras-PC 201 CG1669-PC 1..201 15..215 1047 100 Plus
kappaB-Ras-PA 201 CG1669-PA 1..201 15..215 1047 100 Plus

LD02291.pep Sequence

Translation from 42 to 647

> LD02291.pep
MLNAKIGKVGKVLVCGMKGVGKTALIEQLVYGHVNPETELHPTIEDIYVA
SVDTGRGGARETLRIYDTAGLQGEQQQLPRHYLQFPDAFVLVYDPMDPRS
LDMLADIKADIEKHKEKKEIPVVVLANVRARAAPNPVEKVMDRANIWCQR
ERIKHYTVNAMERPSLYEPFTTLCARLHPMQTKSTFPQLRQVMQNRQKSE
A*

LD02291.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11952-PA 201 GF11952-PA 1..201 1..201 1048 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10750-PA 200 GG10750-PA 1..200 1..201 1056 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20734-PA 209 GH20734-PA 1..208 1..200 953 87 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-PB 201 CG1669-PB 1..201 1..201 1047 100 Plus
kappaB-Ras-PC 201 CG1669-PC 1..201 1..201 1047 100 Plus
kappaB-Ras-PA 201 CG1669-PA 1..201 1..201 1047 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20818-PA 209 GI20818-PA 1..208 1..200 960 88 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17743-PA 209 GL17743-PA 1..209 1..201 988 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27683-PA 209 GA27683-PA 1..209 1..201 983 87.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20796-PA 201 GM20796-PA 1..201 1..201 1071 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\kappaB-Ras-PA 201 GD10258-PA 1..201 1..201 1078 99.5 Plus
Dsim\GD24491-PA 162 GD24491-PA 1..162 40..201 853 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20551-PA 209 GJ20551-PA 1..208 1..200 963 87.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22011-PA 208 GK22011-PA 1..208 1..201 886 83.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\kappaB-Ras-PA 200 GE24025-PA 1..200 1..201 1061 99 Plus