Clone LD02396 Report

Search the DGRC for LD02396

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:23
Well:96
Vector:pBS SK-
Associated Gene/TranscriptAlkB-RA
Protein status:LD02396.pep: gold
Preliminary Size:1385
Sequenced Size:1259

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
AlkB 2008-04-29 Release 5.5 accounting
AlkB 2008-04-29 Picked prior to 5.5
AlkB 2008-08-15 Release 5.9 accounting
AlkB 2008-12-18 5.12 accounting

Clone Sequence Records

LD02396.complete Sequence

1259 bp assembled on 2007-08-16

GenBank Submission: BT030983

> LD02396.complete
CAATGTCTCTTATGAATTGCATTCATTTTTAATTTTTATATCTATCCCAT
AGTATTTCCACCACATGTCTGATTTCTAAACGTGCTCAAAAGCATTTAAG
ATTTCTCCAAACGCAGTCACACTATTGCTATCGTTTATATTAACTTATTG
TTTATATTGTACTTATTGTTTATGAAGCATGTTCAAGCTAGTTTTTAAGC
AGTACAAGTGCAAAAGTACCAGTCCTGATTTAACGGAAGTTGTTAAGATC
GATGATTGTGTAGTCAAGGGGAATGATCAAGAAAAGAGTGATAATAATAT
TGTTCAACGATTAAGTATCAGCAATGTAGAAAGCCTACAGACAATGCCAG
GCGTTAAATCGCCAAAAGATTGGCGAACCTATACATTAACTAACCATCCC
GGCATTATTGTGATTCGGAATCCATTCTCGGAACGAGGCCGGCGTTATTG
GAGCGCCCGATGTCTGCGGGATTTTCCGCGAACGCCAAATATAGTCAATT
TAAATGAAAGGCTCTTCGATGAATCCGTCAGGTCGGACTGGTGGAAACAG
CTTAATCTGTGCAGCGATGGCGTTGAGTTCCAACGTATAAAATCCGCGAT
GCGTTGGACGACATTTGGATATCATCACAACTGGGACACGAAGATCTATG
ATGAGGAGATGCAGTCGCCGTTTCCCGAAGATTTGAGCAGTCTATGCGGA
TTGTTTGCGCAAGCGTTGGGATACGCGGATTTTAAGCCAGAAGCCGCAAT
TGTAAATTACTATCCAGTTGGTAGTACGTTATCGGGTCACACAGATCACT
CTGAACCAAACAAATCGGCCCCTTTGTTTTCTTTTAGTTTTGGTCAGACT
GCAATATTTCTAATTGGTGGAAGATCTTTAGAAGAAAAGCCAACCGCTAT
CTACCTTCAATCCGGGGACGTTATGATAATGTCCGGAGAATCGCGTCTAT
GCTATCACGCAGTTCCTCGTATCATCAAAACTCAGGCTTCCGCGACTTTA
TCACTGATAATTGAAGATGTCGATAATGCAGATATTAAAACGCGTACAAT
TGATAAAGATTTATTTCATGATGTTGGCAACCCTCAATTTTGGGAGCCTT
TTTCGAGATATATGGACGATTCACGTATTAATATTAATATACGTCAAGTT
TTAAATCCAGGAGATGTTAAGCTTTAACCCCTCCTTGGAAAAATTTTTAA
TTTTATAGTATTTTACAAAATAAAAAACTGCATTTCAATTGAAAAAAAAA
AAAAAAAAA

LD02396.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
AlkB-RA 1315 AlkB-RA 1..1245 1..1245 6225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15748449..15748990 837..296 2710 100 Minus
chrX 22417052 chrX 15747983..15748388 1241..836 2030 100 Minus
chrX 22417052 chrX 15749042..15749336 295..1 1475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:48:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15858600..15859141 837..296 2710 100 Minus
X 23542271 X 15858130..15858539 1245..836 2050 100 Minus
X 23542271 X 15859193..15859487 295..1 1475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15866698..15867239 837..296 2710 100 Minus
X 23527363 X 15866228..15866637 1245..836 2050 100 Minus
X 23527363 X 15867291..15867585 295..1 1475 100 Minus
Blast to na_te.dros performed 2019-03-15 20:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 8354..8403 173..123 117 72.5 Minus

LD02396.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:54:00 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15748449..15748990 296..837 100 <- Minus
chrX 15749042..15749336 1..295 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:30:50 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..999 179..1177 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:21 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..999 179..1177 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:28:11 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..999 179..1177 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:51 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..999 179..1177 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:44 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..999 179..1177 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:32 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..1241 1..1241 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:21 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..1241 1..1241 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:28:11 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..1133 109..1241 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:52 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..1241 1..1241 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:44 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
AlkB-RA 1..1133 109..1241 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:54:00 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
X 15858134..15858537 838..1241 100 <- Minus
X 15858600..15859141 296..837 100 <- Minus
X 15859193..15859487 1..295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:54:00 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
X 15858134..15858537 838..1241 100 <- Minus
X 15858600..15859141 296..837 100 <- Minus
X 15859193..15859487 1..295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:54:00 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
X 15858134..15858537 838..1241 100 <- Minus
X 15858600..15859141 296..837 100 <- Minus
X 15859193..15859487 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:28:11 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15752167..15752570 838..1241 100 <- Minus
arm_X 15752633..15753174 296..837 100 <- Minus
arm_X 15753226..15753520 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:46 Download gff for LD02396.complete
Subject Subject Range Query Range Percent Splice Strand
X 15866232..15866635 838..1241 100 <- Minus
X 15866698..15867239 296..837 100 <- Minus
X 15867291..15867585 1..295 100   Minus

LD02396.hyp Sequence

Translation from 178 to 1176

> LD02396.hyp
MFKLVFKQYKCKSTSPDLTEVVKIDDCVVKGNDQEKSDNNIVQRLSISNV
ESLQTMPGVKSPKDWRTYTLTNHPGIIVIRNPFSERGRRYWSARCLRDFP
RTPNIVNLNERLFDESVRSDWWKQLNLCSDGVEFQRIKSAMRWTTFGYHH
NWDTKIYDEEMQSPFPEDLSSLCGLFAQALGYADFKPEAAIVNYYPVGST
LSGHTDHSEPNKSAPLFSFSFGQTAIFLIGGRSLEEKPTAIYLQSGDVMI
MSGESRLCYHAVPRIIKTQASATLSLIIEDVDNADIKTRTIDKDLFHDVG
NPQFWEPFSRYMDDSRININIRQVLNPGDVKL*

LD02396.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
AlkB-PA 332 CG33250-PA 1..332 1..332 1770 100 Plus

LD02396.pep Sequence

Translation from 178 to 1176

> LD02396.pep
MFKLVFKQYKCKSTSPDLTEVVKIDDCVVKGNDQEKSDNNIVQRLSISNV
ESLQTMPGVKSPKDWRTYTLTNHPGIIVIRNPFSERGRRYWSARCLRDFP
RTPNIVNLNERLFDESVRSDWWKQLNLCSDGVEFQRIKSAMRWTTFGYHH
NWDTKIYDEEMQSPFPEDLSSLCGLFAQALGYADFKPEAAIVNYYPVGST
LSGHTDHSEPNKSAPLFSFSFGQTAIFLIGGRSLEEKPTAIYLQSGDVMI
MSGESRLCYHAVPRIIKTQASATLSLIIEDVDNADIKTRTIDKDLFHDVG
NPQFWEPFSRYMDDSRININIRQVLNPGDVKL*

LD02396.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20132-PA 326 GF20132-PA 1..325 1..332 1161 65 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19363-PA 332 GG19363-PA 1..332 1..332 1616 88.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12171-PA 330 GH12171-PA 1..325 1..330 955 55 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
AlkB-PB 332 CG33250-PB 1..332 1..332 1770 100 Plus
AlkB-PA 332 CG33250-PA 1..332 1..332 1770 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14225-PA 287 GI14225-PA 12..287 58..332 849 56.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15953-PA 285 GL15953-PA 4..278 58..332 1071 68.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27875-PA 285 GA27875-PA 4..278 58..332 1065 68 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22517-PA 332 GM22517-PA 1..332 1..332 1680 93.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24673-PA 332 GD24673-PA 1..332 1..332 1689 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14903-PA 291 GJ14903-PA 10..289 51..329 818 53.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17779-PA 323 GK17779-PA 1..323 1..325 957 53.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16011-PA 332 GE16011-PA 1..332 1..332 1548 84.6 Plus