BDGP Sequence Production Resources |
Search the DGRC for LD02396
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 23 |
Well: | 96 |
Vector: | pBS SK- |
Associated Gene/Transcript | AlkB-RA |
Protein status: | LD02396.pep: gold |
Preliminary Size: | 1385 |
Sequenced Size: | 1259 |
Gene | Date | Evidence |
---|---|---|
AlkB | 2008-04-29 | Release 5.5 accounting |
AlkB | 2008-04-29 | Picked prior to 5.5 |
AlkB | 2008-08-15 | Release 5.9 accounting |
AlkB | 2008-12-18 | 5.12 accounting |
1259 bp assembled on 2007-08-16
GenBank Submission: BT030983
> LD02396.complete CAATGTCTCTTATGAATTGCATTCATTTTTAATTTTTATATCTATCCCAT AGTATTTCCACCACATGTCTGATTTCTAAACGTGCTCAAAAGCATTTAAG ATTTCTCCAAACGCAGTCACACTATTGCTATCGTTTATATTAACTTATTG TTTATATTGTACTTATTGTTTATGAAGCATGTTCAAGCTAGTTTTTAAGC AGTACAAGTGCAAAAGTACCAGTCCTGATTTAACGGAAGTTGTTAAGATC GATGATTGTGTAGTCAAGGGGAATGATCAAGAAAAGAGTGATAATAATAT TGTTCAACGATTAAGTATCAGCAATGTAGAAAGCCTACAGACAATGCCAG GCGTTAAATCGCCAAAAGATTGGCGAACCTATACATTAACTAACCATCCC GGCATTATTGTGATTCGGAATCCATTCTCGGAACGAGGCCGGCGTTATTG GAGCGCCCGATGTCTGCGGGATTTTCCGCGAACGCCAAATATAGTCAATT TAAATGAAAGGCTCTTCGATGAATCCGTCAGGTCGGACTGGTGGAAACAG CTTAATCTGTGCAGCGATGGCGTTGAGTTCCAACGTATAAAATCCGCGAT GCGTTGGACGACATTTGGATATCATCACAACTGGGACACGAAGATCTATG ATGAGGAGATGCAGTCGCCGTTTCCCGAAGATTTGAGCAGTCTATGCGGA TTGTTTGCGCAAGCGTTGGGATACGCGGATTTTAAGCCAGAAGCCGCAAT TGTAAATTACTATCCAGTTGGTAGTACGTTATCGGGTCACACAGATCACT CTGAACCAAACAAATCGGCCCCTTTGTTTTCTTTTAGTTTTGGTCAGACT GCAATATTTCTAATTGGTGGAAGATCTTTAGAAGAAAAGCCAACCGCTAT CTACCTTCAATCCGGGGACGTTATGATAATGTCCGGAGAATCGCGTCTAT GCTATCACGCAGTTCCTCGTATCATCAAAACTCAGGCTTCCGCGACTTTA TCACTGATAATTGAAGATGTCGATAATGCAGATATTAAAACGCGTACAAT TGATAAAGATTTATTTCATGATGTTGGCAACCCTCAATTTTGGGAGCCTT TTTCGAGATATATGGACGATTCACGTATTAATATTAATATACGTCAAGTT TTAAATCCAGGAGATGTTAAGCTTTAACCCCTCCTTGGAAAAATTTTTAA TTTTATAGTATTTTACAAAATAAAAAACTGCATTTCAATTGAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AlkB-RA | 1315 | AlkB-RA | 1..1245 | 1..1245 | 6225 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15748449..15748990 | 837..296 | 2710 | 100 | Minus |
chrX | 22417052 | chrX | 15747983..15748388 | 1241..836 | 2030 | 100 | Minus |
chrX | 22417052 | chrX | 15749042..15749336 | 295..1 | 1475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15858600..15859141 | 837..296 | 2710 | 100 | Minus |
X | 23542271 | X | 15858130..15858539 | 1245..836 | 2050 | 100 | Minus |
X | 23542271 | X | 15859193..15859487 | 295..1 | 1475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15866698..15867239 | 837..296 | 2710 | 100 | Minus |
X | 23527363 | X | 15866228..15866637 | 1245..836 | 2050 | 100 | Minus |
X | 23527363 | X | 15867291..15867585 | 295..1 | 1475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 8354..8403 | 173..123 | 117 | 72.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15748449..15748990 | 296..837 | 100 | <- | Minus |
chrX | 15749042..15749336 | 1..295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..999 | 179..1177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..999 | 179..1177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..999 | 179..1177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..999 | 179..1177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..999 | 179..1177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..1241 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..1241 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..1133 | 109..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..1241 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AlkB-RA | 1..1133 | 109..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15858134..15858537 | 838..1241 | 100 | <- | Minus |
X | 15858600..15859141 | 296..837 | 100 | <- | Minus |
X | 15859193..15859487 | 1..295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15858134..15858537 | 838..1241 | 100 | <- | Minus |
X | 15858600..15859141 | 296..837 | 100 | <- | Minus |
X | 15859193..15859487 | 1..295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15858134..15858537 | 838..1241 | 100 | <- | Minus |
X | 15858600..15859141 | 296..837 | 100 | <- | Minus |
X | 15859193..15859487 | 1..295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15752167..15752570 | 838..1241 | 100 | <- | Minus |
arm_X | 15752633..15753174 | 296..837 | 100 | <- | Minus |
arm_X | 15753226..15753520 | 1..295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15866232..15866635 | 838..1241 | 100 | <- | Minus |
X | 15866698..15867239 | 296..837 | 100 | <- | Minus |
X | 15867291..15867585 | 1..295 | 100 | Minus |
Translation from 178 to 1176
> LD02396.hyp MFKLVFKQYKCKSTSPDLTEVVKIDDCVVKGNDQEKSDNNIVQRLSISNV ESLQTMPGVKSPKDWRTYTLTNHPGIIVIRNPFSERGRRYWSARCLRDFP RTPNIVNLNERLFDESVRSDWWKQLNLCSDGVEFQRIKSAMRWTTFGYHH NWDTKIYDEEMQSPFPEDLSSLCGLFAQALGYADFKPEAAIVNYYPVGST LSGHTDHSEPNKSAPLFSFSFGQTAIFLIGGRSLEEKPTAIYLQSGDVMI MSGESRLCYHAVPRIIKTQASATLSLIIEDVDNADIKTRTIDKDLFHDVG NPQFWEPFSRYMDDSRININIRQVLNPGDVKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AlkB-PA | 332 | CG33250-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
Translation from 178 to 1176
> LD02396.pep MFKLVFKQYKCKSTSPDLTEVVKIDDCVVKGNDQEKSDNNIVQRLSISNV ESLQTMPGVKSPKDWRTYTLTNHPGIIVIRNPFSERGRRYWSARCLRDFP RTPNIVNLNERLFDESVRSDWWKQLNLCSDGVEFQRIKSAMRWTTFGYHH NWDTKIYDEEMQSPFPEDLSSLCGLFAQALGYADFKPEAAIVNYYPVGST LSGHTDHSEPNKSAPLFSFSFGQTAIFLIGGRSLEEKPTAIYLQSGDVMI MSGESRLCYHAVPRIIKTQASATLSLIIEDVDNADIKTRTIDKDLFHDVG NPQFWEPFSRYMDDSRININIRQVLNPGDVKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20132-PA | 326 | GF20132-PA | 1..325 | 1..332 | 1161 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19363-PA | 332 | GG19363-PA | 1..332 | 1..332 | 1616 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12171-PA | 330 | GH12171-PA | 1..325 | 1..330 | 955 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AlkB-PB | 332 | CG33250-PB | 1..332 | 1..332 | 1770 | 100 | Plus |
AlkB-PA | 332 | CG33250-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14225-PA | 287 | GI14225-PA | 12..287 | 58..332 | 849 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15953-PA | 285 | GL15953-PA | 4..278 | 58..332 | 1071 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27875-PA | 285 | GA27875-PA | 4..278 | 58..332 | 1065 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22517-PA | 332 | GM22517-PA | 1..332 | 1..332 | 1680 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24673-PA | 332 | GD24673-PA | 1..332 | 1..332 | 1689 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14903-PA | 291 | GJ14903-PA | 10..289 | 51..329 | 818 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17779-PA | 323 | GK17779-PA | 1..323 | 1..325 | 957 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16011-PA | 332 | GE16011-PA | 1..332 | 1..332 | 1548 | 84.6 | Plus |