Clone LD02552 Report

Search the DGRC for LD02552

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:25
Well:52
Vector:pBS SK-
Associated Gene/TranscriptIr76a-RC
Protein status:LD02552.pep: wuzgold
Preliminary Size:1739
Sequenced Size:1634

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8533 2001-01-01 Release 2 assignment
CG8533 2001-10-10 Blastp of sequenced clone
CG8533 2003-01-01 Sim4 clustering to Release 3
CG8533 2008-04-29 Release 5.5 accounting
CG8533 2008-08-15 Release 5.9 accounting
CG8533 2008-12-18 5.12 accounting

Clone Sequence Records

LD02552.complete Sequence

1634 bp (1634 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061057

> LD02552.complete
TTATCTGTCCGGTTATATATTCCAAGGTAGGATAAGTGCAGTGAATTGAA
ATAATTACACATGCTCACCATTTGAATTGCTAGATCAACCTAACATCTTG
GTAATTACTTCACAATACCTGAACTCAAGCACTTTTGAAATTAAAACGAA
CCGATTTGTCGGTCCGCGAAACTTTAACAAAAACCCGGAGCCTGTTGAGT
TTTACATACTCCAGCGTTTCGATGCCAAGGGTACGAAAGCTACTTGGGAA
ACCCAGAGTGCAATGTCCAGCAAGATGCGAAACCTCAAGGGACGCGAGGT
AGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTATGAAA
AGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAACCATT
GATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACAACTG
CACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATCTACT
TGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACGAAAC
GATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGTATAT
GGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTGCCCG
CTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCAGTTT
GTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAGCTCT
TGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAATTCCT
GGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTTCGTA
AATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCGTCCT
AGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGTGGCG
GTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGACTCT
CGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCACAGGC
CTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTTGGTT
TAATGGAGCATTACCGAGTTTACGATGCCAATTTAATATCCGCCTTCTCG
CACACGGAGCAAATGGGATTTGTCGTCGAGCGCCTTCAGTTTGGTCATTT
GGGCAACACCGAGCTAATAGAAAACGATGCCCTAAAGCGGCTGAAACTTA
TGGTGGATGATATTTACTTTGCATTTACGGTGGCGTTTGTGCCGCGACTG
TGGCCGCACTTAAATGCCTACAACGACTTCATTCTGGCTTGGCATTCCTC
GGGCTTTGACAAATTCTGGGAATGGAAGATCGCCGCCGAATACATGAATG
CGCACCGCCAAAATCGCATCGTGGCATCTGAGAAAACGAACCTAGATATA
GGACCTGTTAAACTTGGCATTGATAATTTTATTGGCCTAATCCTGCTTTG
GTGCTTCGGCATGATTTGTAGCCTTCTGACATTTCTCGGAGAACTCTGGA
GGGGACAGGGGTAGTTTAATTGTTTTTATTTTCTATATACATCTACAATA
TCAAAACTAAACTGAAAAAAAAAAAAAAAAAAAA

LD02552.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RC 1715 Ir76a-RC 87..1703 1..1617 8085 100 Plus
Ir76a-RA 1829 Ir76a-RA 282..1817 82..1617 7680 100 Plus
Ir76a.d 1808 Ir76a.d 537..1808 343..1614 6345 99.9 Plus
Ir76a.d 1808 Ir76a.d 263..527 82..346 1325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19792275..19792804 1085..1614 2650 100 Plus
chr3L 24539361 chr3L 19791712..19792217 579..1084 2530 100 Plus
chr3L 24539361 chr3L 19790960..19791306 1..347 1735 100 Plus
chr3L 24539361 chr3L 19791364..19791491 343..470 625 99.2 Plus
chr3L 24539361 chr3L 19791538..19791654 466..582 570 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802898..19803430 1085..1617 2665 100 Plus
3L 28110227 3L 19802335..19802840 579..1084 2530 100 Plus
3L 28110227 3L 19801583..19801929 1..347 1735 100 Plus
3L 28110227 3L 19801987..19802114 343..470 625 99.2 Plus
3L 28110227 3L 19802161..19802277 466..582 570 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19795998..19796530 1085..1617 2665 100 Plus
3L 28103327 3L 19795435..19795940 579..1084 2530 100 Plus
3L 28103327 3L 19794683..19795029 1..347 1735 100 Plus
3L 28103327 3L 19795087..19795214 343..470 625 99.2 Plus
3L 28103327 3L 19795261..19795377 466..582 570 99.1 Plus
Blast to na_te.dros performed 2019-03-16 15:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 1900..1947 1563..1610 114 70.8 Plus

LD02552.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:28:52 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19790960..19791305 1..346 100 -> Plus
chr3L 19791368..19791491 347..470 100 -> Plus
chr3L 19791543..19791651 471..579 100 -> Plus
chr3L 19791713..19792217 580..1084 100 -> Plus
chr3L 19792275..19792804 1085..1614 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:07 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RA 66..1548 82..1564 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:26 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RE 459..1941 82..1564 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:45:50 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 66..1548 82..1564 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:12 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RA 66..1548 82..1564 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:46:44 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 66..1548 82..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:13 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RC 1..1613 1..1613 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:26 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RC 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:45:50 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 229..1761 82..1614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:12 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RC 1..1613 1..1613 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:46:44 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 229..1761 82..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:52 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19801583..19801928 1..346 100 -> Plus
3L 19801991..19802114 347..470 100 -> Plus
3L 19802166..19802274 471..579 100 -> Plus
3L 19802336..19802840 580..1084 100 -> Plus
3L 19802898..19803427 1085..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:52 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19801583..19801928 1..346 100 -> Plus
3L 19801991..19802114 347..470 100 -> Plus
3L 19802166..19802274 471..579 100 -> Plus
3L 19802336..19802840 580..1084 100 -> Plus
3L 19802898..19803427 1085..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:28:52 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19801583..19801928 1..346 100 -> Plus
3L 19801991..19802114 347..470 100 -> Plus
3L 19802166..19802274 471..579 100 -> Plus
3L 19802336..19802840 580..1084 100 -> Plus
3L 19802898..19803427 1085..1614 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:45:50 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19794683..19795028 1..346 100 -> Plus
arm_3L 19795091..19795214 347..470 100 -> Plus
arm_3L 19795266..19795374 471..579 100 -> Plus
arm_3L 19795436..19795940 580..1084 100 -> Plus
arm_3L 19795998..19796527 1085..1614 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:03 Download gff for LD02552.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19794683..19795028 1..346 100 -> Plus
3L 19795091..19795214 347..470 100 -> Plus
3L 19795266..19795374 471..579 100 -> Plus
3L 19795436..19795940 580..1084 100 -> Plus
3L 19795998..19796527 1085..1614 100   Plus

LD02552.hyp Sequence

Translation from 262 to 1563

> LD02552.hyp
MSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTDVTIDGTD
IQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGV
GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWM
CVMLCLLLESLALGITRRWEHSSVAAGNSWISSLRFGCISTLKLFVNQST
NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL
FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQ
MGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHL
NAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK
LGIDNFIGLILLWCFGMICSLLTFLGELWRGQG*

LD02552.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-PE 646 CG42584-PE 214..646 1..433 2306 100 Plus
Ir76a-PA 515 CG42584-PA 83..515 1..433 2306 100 Plus
Ir76a-PB 515 CG8533-PB 83..515 1..433 2306 100 Plus
Ir41a-PC 648 CG33492-PC 202..636 2..428 936 42.3 Plus
Ir92a-PC 678 CG15685-PC 237..669 3..428 402 25.6 Plus

LD02552.pep Sequence

Translation from 262 to 1563

> LD02552.pep
MSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTDVTIDGTD
IQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGV
GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWM
CVMLCLLLESLALGITRRWEHSSVAAGNSWISSLRFGCISTLKLFVNQST
NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL
FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQ
MGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHL
NAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK
LGIDNFIGLILLWCFGMICSLLTFLGELWRGQG*

LD02552.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23592-PA 414 GF23592-PA 1..406 24..429 1718 82.8 Plus
Dana\GF11024-PA 327 GF11024-PA 2..300 83..377 668 42.3 Plus
Dana\GF23026-PA 575 GF23026-PA 341..564 199..423 203 27.4 Plus
Dana\GF23026-PA 575 GF23026-PA 210..341 3..132 185 28.7 Plus
Dana\GF21245-PA 600 GF21245-PA 211..395 3..199 152 25.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16057-PA 436 GG16057-PA 1..432 1..432 2170 95.8 Plus
Dere\GG23131-PA 312 GG23131-PA 1..306 90..428 678 38.9 Plus
Dere\GG23878-PA 639 GG23878-PA 242..576 3..332 294 24.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14655-PA 456 GH14655-PA 19..451 1..429 1544 63 Plus
Dgri\GH20458-PA 657 GH20458-PA 208..643 4..428 1016 42.9 Plus
Dgri\GH14149-PA 610 GH14149-PA 243..373 3..131 200 30.8 Plus
Dgri\GH14149-PA 610 GH14149-PA 380..599 205..428 168 24.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-PE 646 CG42584-PE 214..646 1..433 2306 100 Plus
Ir76a-PA 515 CG42584-PA 83..515 1..433 2306 100 Plus
Ir76a-PB 515 CG8533-PB 83..515 1..433 2306 100 Plus
Ir41a-PC 648 CG33492-PC 202..636 2..428 936 42.3 Plus
Ir92a-PC 678 CG15685-PC 237..669 3..428 402 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11641-PA 497 GI11641-PA 64..491 1..429 1575 66.3 Plus
Dmoj\GI18883-PA 644 GI18883-PA 203..637 4..428 1009 42.2 Plus
Dmoj\GI22230-PA 683 GI22230-PA 241..673 3..428 355 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15733-PA 421 GL15733-PA 1..412 1..430 1677 73 Plus
Dper\GL11057-PA 587 GL11057-PA 140..576 3..429 986 42.5 Plus
Dper\GL23463-PA 697 GL23463-PA 256..687 3..427 352 24.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23782-PA 437 GA23782-PA 1..427 1..429 1761 75.5 Plus
Dpse\GA24592-PA 590 GA24592-PA 140..576 3..429 986 42.5 Plus
Dpse\GA13891-PB 699 GA13891-PB 258..689 3..427 351 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19647-PA 515 GM19647-PA 83..514 1..432 2258 97.2 Plus
Dsec\GM26714-PA 361 GM26714-PA 2..351 83..428 768 43.2 Plus
Dsec\GM23108-PA 640 GM23108-PA 243..577 3..332 317 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14827-PA 515 GD14827-PA 83..514 1..432 2274 97.9 Plus
Dsim\GD15325-PA 324 GD15325-PA 2..314 83..428 688 40.1 Plus
Dsim\GD19349-PA 640 GD19349-PA 243..577 3..332 325 25.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11321-PA 456 GJ11321-PA 19..449 1..429 1696 70.5 Plus
Dvir\GJ21918-PA 655 GJ21918-PA 208..642 4..428 997 42.2 Plus
Dvir\GJ23033-PA 673 GJ23033-PA 228..661 3..428 352 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17497-PA 522 GK17497-PA 8..438 1..424 1633 68 Plus
Dwil\GK10759-PA 514 GK10759-PA 65..501 3..428 983 43 Plus
Dwil\GK22446-PA 719 GK22446-PA 272..708 3..429 343 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19623-PA 451 GE19623-PA 19..450 1..432 2135 94 Plus
Dyak\GE15192-PA 649 GE15192-PA 19..364 1..346 1662 93.1 Plus
Dyak\GE10986-PA 319 GE10986-PA 2..314 83..428 681 39.3 Plus