Clone LD02554 Report

Search the DGRC for LD02554

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:25
Well:54
Vector:pBS SK-
Associated Gene/Transcriptkcc-RD
Protein status:LD02554.pep: gold
Sequenced Size:3925

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5594 2004-03-31 Blastp of sequenced clone
CG5594 2008-04-29 Release 5.5 accounting
CG5594 2008-08-15 Release 5.9 accounting
CG5594 2008-12-18 5.12 accounting

Clone Sequence Records

LD02554.complete Sequence

3925 bp (3925 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012491

> LD02554.complete
CACATCAGATGCCCATAGCCCATATAGCCAATTAGACTCTTTTCACTGCC
TTGTAAACTTAGCGCGGAATCAGTAATTTTATGCGTTCACGGACGCCAAG
GCGGAATCATCCATAAGATGGTATCATGGGTGCTAATTGCAATAAACATA
TCTTGGGGGACGTGTTTTCCAAAATACAATCGCCACTCGGCGTCCCCTAT
GCGTTACATTTGATTTCAATTGGACTTTTCATTAATACTACGCTTTCCCC
CACTCGCGATTCCAAAGTATATACGGTGGAAAATCATTTTGTATTACTCA
TGCGCCTTTAATATGATAGTTTTATTTTATTCGTACAATTGAAAAGTTCA
CCCACATCGGGCAGCAGGAGTCGAAGCCCCCAAAAGTAAACACAATTCTA
CAAAGGACGTTTCCGTTGGCTCTGCCCAGCACAAGTGCATCGGATCGCAT
CACATTGGATCGGATCGGATCGTCGGTGAAGGCGAATTCCAGGCGCTTGC
CCAAAGTGCCTTACATCCACAAATATGCCAGATAGATTTCAAGTTACAAA
GGCTGACGAGGACACCGCGTTGGACTACAACCAGGATGAGTCTGCGAGCG
GCAAGCTACTGGGGGACATCCACGACGAAACCCTAGGTGAGAACTATGGG
TCGTACGATGACTCAGGTGATATCCACAGGGCGGAGGAGAACCAGAAGTC
CAGCATCGACCCAAATCTATATCTGTACGACGATGATTTGGAGACCAGGC
CCCATATATCAACGTTCATTTCATCAATTGCCAATTATGAGAACACGATA
CCAGCGGCCACCGATCCCGATGCAAAGCCGGCAGCTCCATCGGCTCGAAT
GGGTACCCTAATTGGAGTGTTCTTGCCATGCATTCAAAACATCTTTGGTG
TCATATTGTTCATTCGGTTAACATGGGTTGTTGGAACGGCTGGCGCCGTG
TGTGGATTCCTGATTGTTCTGACCTGCTGCTGTGTGACCATGCTAACCGC
GATCTCGATGTCGGCCATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGA
GTTACTTCATGATATCACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTG
GGAATGTTGTTCTATACGGGCACCACGCTAGCAGCGGCGATGTACATCGT
TGGTGCCGTGGAAATCGTATTGACATACATGGCGCCGTGGGCATCGATAT
TTGGGGACTTCACCAAGGACGCTGACGCGATGTACAACAATTTCAGGGTC
TACGGCACTTTGCTGCTCATCTTTATGGGTCTCATTGTGTTCCTGGGCGT
GAAATTCGTCAATAAGTTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTT
CGATAATAGCGGTGTATGTGGGAATATTTGACAATATCCATGGCAACGAA
AAGCTATACATGTGTGTTCTGGGAAAACGACTCTTGAAGGATATCCCGCT
GGAGAATTGCACAAAGGAAGACTCCTTCTTACGCGACATATACTGCCCAG
ATGGTAAATGCGAGGAATACTACCTGGCCAATAACGTGACCAAAGTCAAG
GGCATCAAGGGTTTGGCCAGTGGCGTGTTCTACGACAACATCTTCCCTTC
GTTCCTGGAGAAGGGCCAGTTCATATCCTACGGCAAGAGTGCAATTGACA
TTGAGAACACTAGTGGAGAGTCATACAACCAGATCATGGCCGACATTACC
ACGTCGTTCACCCTTCTTATCGGCATCTTCTTCCCATCGGTCACAGGCAT
CATGGCTGGATCCAATCGATCGGGCGACCTGGCTGACGCCCAGAAGAGCA
TACCCATCGGAACGATATGTGCCATTCTGACCACCAGCACAGTCTACTTG
TCCAGCGTTATGTTCTTCGCCGGCACAGTGGACAATCTCCTGTTGAGGGA
CAAATTCGGTCAGTCTATTGGTGGCAAGCTGGTGGTGGCCAATATTGCCT
GGCCAAATCAGTGGGTCATTCTGATTGGCTCCTTCCTCTCCACCTTGGGC
GCTGGTCTGCAGAGTTTGACTGGAGCACCCCGACTGCTGCAGGCGATTGC
GAGGGATGAGATCATCCCCTTCCTGGCTCCATTTGCCAAGTCTTCGAAGC
GTGGCGAACCCACCCGTGCGCTGCTCCTGACCATTGTCATTTGCCAGTGC
GGCATCCTGTTGGGCAACGTGGACTTGCTGGCTCCTCTGCTGTCCATGTT
CTTCCTCATGTGCTACGGCTTTGTCAACCTGGCCTGCGCTGTGCAAACCC
TGCTGAGGACTCCCAACTGGAGACCGCGCTTCAAGTTCTACCACTGGAGC
TTGTCGCTCATCGGCCTGACGCTGTGCATATCAGTCATGATCATGACTTC
CTGGTATTTCGCACTGATTGCTATGGGAATGGCCATCATTATCTACAAAT
ACATAGAGTACCGCGGTGCTGAGAAGGAGTGGGGTGATGGCATTCGTGGA
ATGGCCCTGACCGCCGCCAGGTACTCGCTACTCCGTCTGGAGGAAGGCCC
ACCGCATACGAAAAATTGGCGTCCCCAAATTTTGGTGCTTTCGAAGCTCA
ACGACAACCTCTTGCCAAAATACAGGAAGATATTCTCCTTTGCCACCCAG
CTGAAAGCTGGCAAGGGATTGACGATTTGTGTGTCTGTGATAAAGGGCGA
CCACACTAAGATCACTAACAAAGCCGTGGATGCGAAGGCCACGCTGCGCA
AGTACATGACCGACGAGAAGGTGAAGGGCTTCTGTGATGTCCTGGTAGCC
CAGCAGATTGGCGAGGGCCTCAGCTCAGTCATCCAAACCATCGGACTGGG
GGGCATGAAGCCCAACACAGTCATCATCGGATGGCCGTACAGCTGGCGAC
AGGAGGGCAGGAACAGCTGGAAGACCTTCATCCAAACGGTCCGCACGGTG
GCCGCCTGCCACATGGCCCTCATGGTGCCCAAGGGCATCAACTTCTATCC
AGAATCAAACCACAAAATCGGTGGTAACATTGATATCTGGTGGATTGTCC
ACGACGGTGGTCTGCTCATGTTGCTGCCCTTCCTGCTGAAGCAACATCGC
ACCTGGCGCAATTGCAAGCTAAGGATCTTCACAGTTGCTCAAATCGAGGA
CAACTCGATTCAAATGAAGAAGGATCTAAAGACATTCCTCTACCATCTTC
GAATCGAGGCCGATGTTGAAGTTGTTGAGATGAACAACAGCGATATTTCC
GCTTATACCTACGAGCGGACCCTGATGATGGAACAGCGTAATCAGATGCT
GAGAGCATTAGGCTTAAATAAGAAAGAAAACTCCAAAGTGGTTCAAACAA
TTGTAGACCACCATTATGACGCCACCAAAACGGCGTCTAAAGTTCGCTTC
GCCGATCCAACTATAGAAGAAACACAGCATCACGATTCTCAAAACGACGA
GAAACGTAACTCAATTGATTTGGATGGTCCCGAGAACGCGGACACACCCG
AAACTACTTCTAACAAGGATGAATCGACAGAGAAAGCCGACGGAGACTTC
AAGTCCAGTGTGAAACCGGATGAGTTCAACGTTCGTCGCATGCACACAGC
AATAAAACTAAACGAGGTTATTGTAGAAAAGTCACAGGACGCCCAGTTGG
TCATAATGAATCTACCTGGACCACCTAGGGAGGTGAGAGCGGAGCGTGAA
AGAAATTATATGGAATTTCTGGAGGTATTAACAGAGGGCCTTGAAAAAGT
GTTAATGGTTCGCGGAGGAGGCCGAGAAGTTATAACAATTTACTCTTAAG
AGCATTAATCGCTCAGTTTTATAAGAGTTCGCAACACTAGACAAGTTTAA
GAATCAATCAAATTTTTAAAGAAGGTTATTAATTTGTTATATTCAATCAT
ATGTCCAAATATTTTATTTTTACGTAAATAAAATATCAAAAAATTGTAAC
AATAAGAAAAAAAAAAAAAAAAAAA

LD02554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5594-RD 3935 CG5594-RD 22..3929 1..3908 19525 99.9 Plus
CG5594.h 4011 CG5594.h 22..3316 1..3295 16475 100 Plus
CG5594.l 3933 CG5594.l 657..3905 660..3908 16230 99.9 Plus
CG5594.l 3933 CG5594.l 22..657 1..636 3180 100 Plus
CG5594.h 4011 CG5594.h 3364..3983 3289..3908 3085 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19794171..19794674 1..504 2520 100 Plus
chr2R 21145070 chr2R 19808007..19808370 2416..2779 1820 100 Plus
chr2R 21145070 chr2R 19799801..19800061 1904..2164 1305 100 Plus
chr2R 21145070 chr2R 19800121..19800374 2163..2416 1270 100 Plus
chr2R 21145070 chr2R 19810860..19811108 3658..3906 1245 100 Plus
chr2R 21145070 chr2R 19799310..19799530 1527..1747 1105 100 Plus
chr2R 21145070 chr2R 19808684..19808899 2967..3182 1080 100 Plus
chr2R 21145070 chr2R 19797719..19797914 660..855 980 100 Plus
chr2R 21145070 chr2R 19808435..19808621 2780..2966 935 100 Plus
chr2R 21145070 chr2R 19799583..19799741 1745..1903 795 100 Plus
chr2R 21145070 chr2R 19795721..19795876 505..660 780 100 Plus
chr2R 21145070 chr2R 19810658..19810797 3518..3657 685 99.3 Plus
chr2R 21145070 chr2R 19810458..19810596 3384..3522 680 99.3 Plus
chr2R 21145070 chr2R 19798230..19798364 852..986 675 100 Plus
chr2R 21145070 chr2R 19798939..19799069 1278..1408 655 100 Plus
chr2R 21145070 chr2R 19799129..19799247 1409..1527 595 100 Plus
chr2R 21145070 chr2R 19808964..19809074 3182..3292 555 100 Plus
chr2R 21145070 chr2R 19798771..19798879 1172..1280 545 100 Plus
chr2R 21145070 chr2R 19798574..19798677 1069..1172 520 100 Plus
chr2R 21145070 chr2R 19810043..19810137 3290..3384 475 100 Plus
chr2R 21145070 chr2R 19798426..19798509 986..1069 420 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23908128..23908631 1..504 2520 100 Plus
2R 25286936 2R 23921964..23922327 2416..2779 1820 100 Plus
2R 25286936 2R 23913758..23914018 1904..2164 1305 100 Plus
2R 25286936 2R 23914078..23914331 2163..2416 1270 100 Plus
2R 25286936 2R 23924818..23925068 3658..3908 1255 100 Plus
2R 25286936 2R 23913267..23913487 1527..1747 1105 100 Plus
2R 25286936 2R 23922641..23922856 2967..3182 1080 100 Plus
2R 25286936 2R 23911676..23911871 660..855 980 100 Plus
2R 25286936 2R 23922392..23922578 2780..2966 935 100 Plus
2R 25286936 2R 23913540..23913698 1745..1903 795 100 Plus
2R 25286936 2R 23909678..23909833 505..660 780 100 Plus
2R 25286936 2R 23924616..23924755 3518..3657 685 99.3 Plus
2R 25286936 2R 23924416..23924554 3384..3522 680 99.3 Plus
2R 25286936 2R 23912187..23912321 852..986 675 100 Plus
2R 25286936 2R 23912896..23913026 1278..1408 655 100 Plus
2R 25286936 2R 23913086..23913204 1409..1527 595 100 Plus
2R 25286936 2R 23922921..23923031 3182..3292 555 100 Plus
2R 25286936 2R 23912728..23912836 1172..1280 545 100 Plus
2R 25286936 2R 23912531..23912634 1069..1172 520 100 Plus
2R 25286936 2R 23924001..23924095 3290..3384 475 100 Plus
2R 25286936 2R 23912383..23912466 986..1069 420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23909327..23909830 1..504 2520 100 Plus
2R 25260384 2R 23923163..23923526 2416..2779 1820 100 Plus
2R 25260384 2R 23914957..23915217 1904..2164 1305 100 Plus
2R 25260384 2R 23915277..23915530 2163..2416 1270 100 Plus
2R 25260384 2R 23926017..23926267 3658..3908 1255 100 Plus
2R 25260384 2R 23914466..23914686 1527..1747 1105 100 Plus
2R 25260384 2R 23923840..23924055 2967..3182 1080 100 Plus
2R 25260384 2R 23912875..23913070 660..855 980 100 Plus
2R 25260384 2R 23923591..23923777 2780..2966 935 100 Plus
2R 25260384 2R 23914739..23914897 1745..1903 795 100 Plus
2R 25260384 2R 23910877..23911032 505..660 780 100 Plus
2R 25260384 2R 23925815..23925954 3518..3657 685 99.2 Plus
2R 25260384 2R 23925615..23925753 3384..3522 680 99.2 Plus
2R 25260384 2R 23913386..23913520 852..986 675 100 Plus
2R 25260384 2R 23914095..23914225 1278..1408 655 100 Plus
2R 25260384 2R 23914285..23914403 1409..1527 595 100 Plus
2R 25260384 2R 23924120..23924230 3182..3292 555 100 Plus
2R 25260384 2R 23913927..23914035 1172..1280 545 100 Plus
2R 25260384 2R 23913730..23913833 1069..1172 520 100 Plus
2R 25260384 2R 23925200..23925294 3290..3384 475 100 Plus
2R 25260384 2R 23913582..23913665 986..1069 420 100 Plus
Blast to na_te.dros performed 2019-03-15 17:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 2316..2357 1370..1411 120 76.2 Plus

LD02554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:19:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19794171..19794674 1..504 100 -> Plus
chr2R 19795721..19795876 505..660 100 -> Plus
chr2R 19797720..19797911 661..852 100 -> Plus
chr2R 19798231..19798364 853..986 100 -> Plus
chr2R 19798427..19798509 987..1069 100 -> Plus
chr2R 19798575..19798677 1070..1172 100 -> Plus
chr2R 19798772..19798877 1173..1278 100 -> Plus
chr2R 19798940..19799069 1279..1408 100 -> Plus
chr2R 19799129..19799247 1409..1527 100 -> Plus
chr2R 19799311..19799529 1528..1746 100 -> Plus
chr2R 19799585..19799741 1747..1903 100 -> Plus
chr2R 19799801..19800060 1904..2163 100 -> Plus
chr2R 19800122..19800374 2164..2416 100 -> Plus
chr2R 19808008..19808370 2417..2779 100 -> Plus
chr2R 19808435..19808621 2780..2966 100 -> Plus
chr2R 19808684..19808899 2967..3182 100 -> Plus
chr2R 19808965..19809072 3183..3290 100 -> Plus
chr2R 19810044..19810136 3291..3383 100 -> Plus
chr2R 19810458..19810591 3384..3517 100 -> Plus
chr2R 19810658..19810797 3518..3657 99 -> Plus
chr2R 19810860..19811108 3658..3906 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:39:38 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RD 1..3225 525..3749 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:34 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RD 1..3225 525..3749 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:32:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RE 1..3225 525..3749 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:18 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RD 1..3225 525..3749 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:44 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RE 1..3225 525..3749 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:39:38 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RD 1..3906 1..3906 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:34 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RD 1..3906 1..3906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:32:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RD 1..3883 24..3906 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:18 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RD 1..3906 1..3906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:44 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RD 1..3883 24..3906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:19:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23913268..23913486 1528..1746 100 -> Plus
2R 23913542..23913698 1747..1903 100 -> Plus
2R 23913758..23914017 1904..2163 100 -> Plus
2R 23908128..23908631 1..504 100 -> Plus
2R 23909678..23909833 505..660 100 -> Plus
2R 23911677..23911868 661..852 100 -> Plus
2R 23912188..23912321 853..986 100 -> Plus
2R 23912384..23912466 987..1069 100 -> Plus
2R 23912532..23912634 1070..1172 100 -> Plus
2R 23912729..23912834 1173..1278 100 -> Plus
2R 23912897..23913026 1279..1408 100 -> Plus
2R 23913086..23913204 1409..1527 100 -> Plus
2R 23914079..23914331 2164..2416 100 -> Plus
2R 23921965..23922327 2417..2779 100 -> Plus
2R 23922392..23922578 2780..2966 100 -> Plus
2R 23922641..23922856 2967..3182 100 -> Plus
2R 23922922..23923029 3183..3290 100 -> Plus
2R 23924002..23924094 3291..3383 100 -> Plus
2R 23924416..23924549 3384..3517 100 -> Plus
2R 23924616..23924755 3518..3657 99 -> Plus
2R 23924818..23925066 3658..3906 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:19:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23913268..23913486 1528..1746 100 -> Plus
2R 23913542..23913698 1747..1903 100 -> Plus
2R 23913758..23914017 1904..2163 100 -> Plus
2R 23908128..23908631 1..504 100 -> Plus
2R 23909678..23909833 505..660 100 -> Plus
2R 23911677..23911868 661..852 100 -> Plus
2R 23912188..23912321 853..986 100 -> Plus
2R 23912384..23912466 987..1069 100 -> Plus
2R 23912532..23912634 1070..1172 100 -> Plus
2R 23912729..23912834 1173..1278 100 -> Plus
2R 23912897..23913026 1279..1408 100 -> Plus
2R 23913086..23913204 1409..1527 100 -> Plus
2R 23914079..23914331 2164..2416 100 -> Plus
2R 23921965..23922327 2417..2779 100 -> Plus
2R 23922392..23922578 2780..2966 100 -> Plus
2R 23922641..23922856 2967..3182 100 -> Plus
2R 23922922..23923029 3183..3290 100 -> Plus
2R 23924002..23924094 3291..3383 100 -> Plus
2R 23924416..23924549 3384..3517 100 -> Plus
2R 23924616..23924755 3518..3657 99 -> Plus
2R 23924818..23925066 3658..3906 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:19:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23913268..23913486 1528..1746 100 -> Plus
2R 23913542..23913698 1747..1903 100 -> Plus
2R 23913758..23914017 1904..2163 100 -> Plus
2R 23908128..23908631 1..504 100 -> Plus
2R 23909678..23909833 505..660 100 -> Plus
2R 23911677..23911868 661..852 100 -> Plus
2R 23912188..23912321 853..986 100 -> Plus
2R 23912384..23912466 987..1069 100 -> Plus
2R 23912532..23912634 1070..1172 100 -> Plus
2R 23912729..23912834 1173..1278 100 -> Plus
2R 23912897..23913026 1279..1408 100 -> Plus
2R 23913086..23913204 1409..1527 100 -> Plus
2R 23914079..23914331 2164..2416 100 -> Plus
2R 23921965..23922327 2417..2779 100 -> Plus
2R 23922392..23922578 2780..2966 100 -> Plus
2R 23922641..23922856 2967..3182 100 -> Plus
2R 23922922..23923029 3183..3290 100 -> Plus
2R 23924002..23924094 3291..3383 100 -> Plus
2R 23924416..23924549 3384..3517 100 -> Plus
2R 23924616..23924755 3518..3657 99 -> Plus
2R 23924818..23925066 3658..3906 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:32:13 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19809915..19810101 2780..2966 100 -> Plus
arm_2R 19809488..19809850 2417..2779 100 -> Plus
arm_2R 19801602..19801854 2164..2416 100 -> Plus
arm_2R 19795651..19796154 1..504 100 -> Plus
arm_2R 19797201..19797356 505..660 100 -> Plus
arm_2R 19799200..19799391 661..852 100 -> Plus
arm_2R 19799711..19799844 853..986 100 -> Plus
arm_2R 19799907..19799989 987..1069 100 -> Plus
arm_2R 19800055..19800157 1070..1172 100 -> Plus
arm_2R 19800252..19800357 1173..1278 100 -> Plus
arm_2R 19800420..19800549 1279..1408 100 -> Plus
arm_2R 19800609..19800727 1409..1527 100 -> Plus
arm_2R 19800791..19801009 1528..1746 100 -> Plus
arm_2R 19801065..19801221 1747..1903 100 -> Plus
arm_2R 19801281..19801540 1904..2163 100 -> Plus
arm_2R 19810164..19810379 2967..3182 100 -> Plus
arm_2R 19810445..19810552 3183..3290 100 -> Plus
arm_2R 19811525..19811617 3291..3383 100 -> Plus
arm_2R 19811939..19812072 3384..3517 100 -> Plus
arm_2R 19812139..19812278 3518..3657 99 -> Plus
arm_2R 19812341..19812589 3658..3906 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:44 Download gff for LD02554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23925833..23925972 3518..3657 99 -> Plus
2R 23923609..23923795 2780..2966 100 -> Plus
2R 23923858..23924073 2967..3182 100 -> Plus
2R 23924139..23924246 3183..3290 100 -> Plus
2R 23925219..23925311 3291..3383 100 -> Plus
2R 23925633..23925766 3384..3517 100 -> Plus
2R 23915296..23915548 2164..2416 100 -> Plus
2R 23923182..23923544 2417..2779 100 -> Plus
2R 23909345..23909848 1..504 100 -> Plus
2R 23910895..23911050 505..660 100 -> Plus
2R 23912894..23913085 661..852 100 -> Plus
2R 23913405..23913538 853..986 100 -> Plus
2R 23913601..23913683 987..1069 100 -> Plus
2R 23913749..23913851 1070..1172 100 -> Plus
2R 23913946..23914051 1173..1278 100 -> Plus
2R 23914114..23914243 1279..1408 100 -> Plus
2R 23914303..23914421 1409..1527 100 -> Plus
2R 23914485..23914703 1528..1746 100 -> Plus
2R 23914759..23914915 1747..1903 100 -> Plus
2R 23914975..23915234 1904..2163 100 -> Plus
2R 23926035..23926283 3658..3906 100   Plus

LD02554.hyp Sequence

Translation from 524 to 3748

> LD02554.hyp
MPDRFQVTKADEDTALDYNQDESASGKLLGDIHDETLGENYGSYDDSGDI
HRAEENQKSSIDPNLYLYDDDLETRPHISTFISSIANYENTIPAATDPDA
KPAAPSARMGTLIGVFLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLT
CCCVTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGT
TLAAAMYIVGAVEIVLTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIF
MGLIVFLGVKFVNKFATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLG
KRLLKDIPLENCTKEDSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASG
VFYDNIFPSFLEKGQFISYGKSAIDIENTSGESYNQIMADITTSFTLLIG
IFFPSVTGIMAGSNRSGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAG
TVDNLLLRDKFGQSIGGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTG
APRLLQAIARDEIIPFLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVD
LLAPLLSMFFLMCYGFVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTL
CISVMIMTSWYFALIAMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARY
SLLRLEEGPPHTKNWRPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLT
ICVSVIKGDHTKITNKAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLS
SVIQTIGLGGMKPNTVIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALM
VPKGINFYPESNHKIGGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLR
IFTVAQIEDNSIQMKKDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTL
MMEQRNQMLRALGLNKKENSKVVQTIVDHHYDATKTASKVRFADPTIEET
QHHDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSVKPDE
FNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYMEFLE
VLTEGLEKVLMVRGGGREVITIYS*

LD02554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
kcc-PD 1074 CG5594-PD 1..1074 1..1074 5576 100 Plus
kcc-PE 1074 CG5594-PE 1..1074 1..1074 5576 100 Plus
kcc-PF 1066 CG5594-PF 1..1066 1..1074 5510 99.3 Plus
kcc-PA 1043 CG5594-PA 1..1043 1..1074 5368 97.1 Plus
kcc-PC 1059 CG5594-PC 7..1059 20..1074 5348 98 Plus

LD02554.pep Sequence

Translation from 524 to 3748

> LD02554.pep
MPDRFQVTKADEDTALDYNQDESASGKLLGDIHDETLGENYGSYDDSGDI
HRAEENQKSSIDPNLYLYDDDLETRPHISTFISSIANYENTIPAATDPDA
KPAAPSARMGTLIGVFLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLT
CCCVTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGT
TLAAAMYIVGAVEIVLTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIF
MGLIVFLGVKFVNKFATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLG
KRLLKDIPLENCTKEDSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASG
VFYDNIFPSFLEKGQFISYGKSAIDIENTSGESYNQIMADITTSFTLLIG
IFFPSVTGIMAGSNRSGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAG
TVDNLLLRDKFGQSIGGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTG
APRLLQAIARDEIIPFLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVD
LLAPLLSMFFLMCYGFVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTL
CISVMIMTSWYFALIAMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARY
SLLRLEEGPPHTKNWRPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLT
ICVSVIKGDHTKITNKAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLS
SVIQTIGLGGMKPNTVIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALM
VPKGINFYPESNHKIGGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLR
IFTVAQIEDNSIQMKKDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTL
MMEQRNQMLRALGLNKKENSKVVQTIVDHHYDATKTASKVRFADPTIEET
QHHDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSVKPDE
FNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYMEFLE
VLTEGLEKVLMVRGGGREVITIYS*

LD02554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12875-PA 1058 GF12875-PA 7..1058 20..1074 5317 94.7 Plus
Dana\GF24985-PA 1184 GF24985-PA 110..857 4..827 852 30 Plus
Dana\GF17705-PA 1066 GF17705-PA 1..774 1..807 781 26.9 Plus
Dana\GF14838-PA 931 GF14838-PA 53..837 101..900 644 26.2 Plus
Dana\GF21265-PA 717 GF21265-PA 96..459 109..570 400 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22903-PA 1074 GG22903-PA 1..1074 1..1074 5763 99.8 Plus
Dere\GG21702-PA 941 GG21702-PA 58..844 102..900 622 25.8 Plus
Dere\GG13837-PA 1177 GG13837-PA 403..870 370..827 596 31.4 Plus
Dere\GG10986-PA 1068 GG10986-PA 342..776 391..807 526 30.7 Plus
Dere\GG12705-PA 699 GG12705-PA 92..454 109..570 394 26.1 Plus
Dere\GG10986-PA 1068 GG10986-PA 1..314 1..293 333 28.4 Plus
Dere\GG13837-PA 1177 GG13837-PA 122..403 4..300 330 34.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20188-PA 1066 GH20188-PA 1..1066 1..1074 5346 93 Plus
Dgri\GH16072-PA 1162 GH16072-PA 103..837 4..806 844 29.8 Plus
Dgri\GH10529-PA 946 GH10529-PA 59..937 102..1064 676 25.9 Plus
Dgri\GH18994-PA 1077 GH18994-PA 357..784 398..807 532 31.4 Plus
Dgri\GH11901-PA 715 GH11901-PA 90..453 109..570 392 26.8 Plus
Dgri\GH18994-PA 1077 GH18994-PA 112..323 75..294 338 34.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
kcc-PD 1074 CG5594-PD 1..1074 1..1074 5576 100 Plus
kcc-PE 1074 CG5594-PE 1..1074 1..1074 5576 100 Plus
kcc-PF 1066 CG5594-PF 1..1066 1..1074 5510 99.3 Plus
kcc-PA 1043 CG5594-PA 1..1043 1..1074 5368 97.1 Plus
kcc-PC 1059 CG5594-PC 7..1059 20..1074 5348 98 Plus
kcc-PG 1077 CG5594-PG 7..1077 20..1074 5319 96.4 Plus
kcc-PB 1028 CG5594-PB 7..1028 20..1074 5140 95.1 Plus
Ncc69-PG 1171 CG4357-PG 116..864 4..827 890 29.9 Plus
Ncc69-PA 1171 CG4357-PA 116..864 4..827 890 29.9 Plus
Ncc69-PF 1191 CG4357-PF 116..864 4..827 890 29.9 Plus
Ncc69-PD 1191 CG4357-PD 116..864 4..827 890 29.9 Plus
Ncc69-PC 1191 CG4357-PC 116..864 4..827 890 29.9 Plus
Ncc69-PE 1207 CG4357-PE 116..864 4..827 890 29.9 Plus
NKCC-PA 995 CG31547-PA 32..703 75..807 687 26.5 Plus
NKCC-PB 1068 CG31547-PB 105..776 75..807 687 26.5 Plus
CG10413-PB 941 CG10413-PB 58..844 102..900 636 25.8 Plus
CG10413-PA 941 CG10413-PA 58..844 102..900 636 25.8 Plus
CG12773-PB 711 CG12773-PB 92..453 110..570 410 26 Plus
CG12773-PC 712 CG12773-PC 93..454 110..570 410 26 Plus
CG12773-PA 712 CG12773-PA 93..454 110..570 410 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20717-PA 1066 GI20717-PA 1..1066 1..1074 5224 91.2 Plus
Dmoj\GI17197-PA 947 GI17197-PA 63..938 102..1064 644 25 Plus
Dmoj\GI24495-PA 1074 GI24495-PA 346..780 391..807 532 31.2 Plus
Dmoj\GI12335-PA 1112 GI12335-PA 373..789 336..806 469 27.4 Plus
Dmoj\GI15632-PA 714 GI15632-PA 90..453 109..570 380 26 Plus
Dmoj\GI24495-PA 1074 GI24495-PA 1..318 1..293 347 29.8 Plus
Dmoj\GI12335-PA 1112 GI12335-PA 102..308 4..219 324 37.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11178-PA 1059 GL11178-PA 7..1059 20..1074 5268 93.1 Plus
Dper\GL22161-PA 1062 GL22161-PA 1..770 1..807 786 27.5 Plus
Dper\GL24962-PA 942 GL24962-PA 109..693 4..655 685 31.4 Plus
Dper\GL18742-PA 630 GL18742-PA 1..535 410..900 423 26.7 Plus
Dper\GL14385-PA 719 GL14385-PA 90..453 109..570 398 26 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18994-PA 1059 GA18994-PA 7..1059 20..1074 5268 93.1 Plus
Dpse\GA18131-PA 1187 GA18131-PA 111..843 4..806 853 30.3 Plus
Dpse\GA16316-PA 1062 GA16316-PA 1..770 1..807 793 27.6 Plus
Dpse\GA16316-PB 995 GA16316-PB 32..703 75..807 771 28.7 Plus
Dpse\GA10302-PA 941 GA10302-PA 57..846 101..900 679 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16063-PA 1074 GM16063-PA 1..1074 1..1074 5766 99.9 Plus
Dsec\GM24663-PA 1171 GM24663-PA 116..864 4..827 748 29.3 Plus
Dsec\GM17082-PA 943 GM17082-PA 57..934 97..1064 640 25.4 Plus
Dsec\GM10628-PA 1061 GM10628-PA 346..769 402..807 502 30 Plus
Dsec\GM18981-PA 542 GM18981-PA 92..454 109..570 383 26.1 Plus
Dsec\GM10628-PA 1061 GM10628-PA 1..314 1..293 316 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12726-PA 1167 GD12726-PA 116..860 4..827 825 30.4 Plus
Dsim\GD11810-PA 130 GD11810-PA 1..120 1..121 637 96.7 Plus
Dsim\GD21827-PA 921 GD21827-PA 57..912 97..1064 585 24.6 Plus
Dsim\GD19613-PA 1053 GD19613-PA 437..761 481..807 430 30.4 Plus
Dsim\GD19613-PA 1053 GD19613-PA 1..314 1..293 330 27.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21885-PA 1067 GJ21885-PA 1..1067 1..1074 5255 91.6 Plus
Dvir\GJ12226-PA 1179 GJ12226-PA 101..835 4..806 873 29.7 Plus
Dvir\GJ24561-PA 1081 GJ24561-PA 115..1081 75..1074 816 26.6 Plus
Dvir\GJ19803-PA 944 GJ19803-PA 60..847 102..900 659 27 Plus
Dvir\GJ19220-PA 714 GJ19220-PA 90..453 109..570 388 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15715-PA 1067 GK15715-PA 1..1067 1..1074 5462 95.5 Plus
Dwil\GK12754-PA 1189 GK12754-PA 109..840 4..806 850 29.8 Plus
Dwil\GK24654-PA 936 GK24654-PA 59..927 102..1064 644 25.9 Plus
Dwil\GK14023-PA 1081 GK14023-PA 352..786 391..807 519 30.7 Plus
Dwil\GK14023-PA 1081 GK14023-PA 1..314 1..283 331 28.6 Plus
Dwil\GK16364-PA 728 GK16364-PA 293..458 398..570 239 31.6 Plus
Dwil\GK16364-PA 728 GK16364-PA 95..259 109..285 219 32.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14341-PA 1074 GE14341-PA 1..1074 1..1074 5759 99.7 Plus
Dyak\GE20127-PA 1177 GE20127-PA 122..870 4..827 850 30.6 Plus
Dyak\GE12725-PA 941 GE12725-PA 58..844 102..900 630 26 Plus
Dyak\GE25275-PA 1068 GE25275-PA 342..776 391..807 526 30.7 Plus
Dyak\GE16533-PA 717 GE16533-PA 92..454 109..570 396 26.1 Plus
Dyak\GE25275-PA 1068 GE25275-PA 1..314 1..293 336 28.4 Plus