Clone LD02709 Report

Search the DGRC for LD02709

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:27
Well:9
Vector:pBS SK-
Associated Gene/TranscriptMap60-RA
Protein status:LD02709.pep: gold
Preliminary Size:1858
Sequenced Size:1855

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1825 2001-01-01 Release 2 assignment
CG1825 2001-11-02 Blastp of sequenced clone
CG1825 2003-01-01 Sim4 clustering to Release 3
Map60 2008-04-29 Release 5.5 accounting
Map60 2008-08-15 Release 5.9 accounting
Map60 2008-12-18 5.12 accounting

Clone Sequence Records

LD02709.complete Sequence

1855 bp (1855 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069313

> LD02709.complete
CACATTTTCCGCCAATTTACCGACGCCAAATACAGAAGAAAAGAGAAGCG
AACGGTGCGAAAGCGGAGAGAAAAACAAGCGGATCCTAGTTACATATACC
AATTCGTGTGTCGCGTGTTATCAAAACAGCCTCCAAAATTATCAGGAACG
CGCAACCAGCGGGCCGCAAGTCGCTGACTAAGATGGCAATCCAACTGGAC
AAGATTCTGCAGGACATCGCCAAAGAAAAGGTGCTGCATCCAAACAATGG
CGGCGCCAGCAAGCAGGAGCAGGAGGAGGCGTGGGCCAGGATCGGGCGTC
TCAACAAGCTCTCTGTGCACGAATCGCGCTCCATCTTCATAGTGCTCCAA
AAGAAGTACGAGCAGGAAAAGCTAAAGGGCAATTCGGCGTGGAAGCTCTT
CAGTCTGATGCATCAGATCCATCAGGAGCCTAAAATCTCAATCAAGGAGG
AGAATGATCAAGTACCCATGGAGGAGGTGGAGGAGTACGAAATGCTGGAG
GTGCAGGAGCCTGAGGACGAGGATGACGCCCATCAGTACGGACAGCACAC
CAACTCTACCGGCTCGGCGTCCTCCGACGGCGAAAGCCCCACAAAGTCAC
ACAGCACCGGTTCGCCAGAAAAGGACGAGCGGTTGGCGTACGCCAAACCC
AACGTCGACACTCCTCGCCCAGCCATCGAGGAGAAAAAGCTGCTCAACAC
ACTGGCTAACAACACACCGCGAAGTAGCTCGCTGTCCGCCGCCGCAGCAG
TACTGCAAAAGAAGGGAATTACTGTGAAGAAGACGCCCAGCTCCGCAGCA
GCACCGAAACCGGCTATTGGGCAACAGGCGCCAGCCAGTGGGCAAAGATC
AAGCTCCTCGCGCACCACCATTCAGCTGCCAGATTCTTTGAAGCGCAAAC
TTTCGGAGGAGTACACCTCGTCATCGGCGCAAAAAAAGCAGACCAAGACC
ACGAGCCCGAAACAAGCCGCTTCATCGGCAGCCGCAACTTCAGTGCACAC
CAGCGTTCCAGATCAACTGCCGGCGGGAAACAATGTGGTGCACACAACCA
CTGCCCAGCTGATGCAGGTTAAGAAGGAGCGTGAGGACAACCAGACACCA
CCGCCGGGTATCAACATCATCACCATTCCATCGGCACAACAGATAAACGG
TGGTGGTGGGGGAGCGAACTCATCGACAGCCGCCACCATTGCTTCCACCT
CGGTGGCTTCCACAAACGGCTTTTCGCCACACATCGACGAGCTGGACTTT
AAGAATGACATTATCTTCGGGCCGAAGATCAACGCCGCCTCCTCCAATAC
ACCCGAGATTATCAACCTGGGCAACTTTGACAACTCGCTGCCGCCAACCT
TTTTCAAGAATCTATGCAACTCGTCGCGACACGAGTCTCTCGGGCTGTAC
GTGGCCAATGTGATGAACAGACTCTCTTCGCGTGCCTCCGCCAAGCTGGA
GCTGTCCATCTTGCGCGCCATCCTCGATGTGCAGAGCGACGAACTGGAGC
AGTAGACCGACTGATACTCGCAATTTAAATGATTACTCAGCTTACTTATT
AGACAAACTAAAAAGGTAGTTATGTAGTAGGCCTGTCTGAACCATTTCTC
GTATTTATCGTATTATTTTTTCCGTGTTCAAACGTCTGCGTTCTGTGCCG
CCCACTTGTAAAATGTATTTACTCACAGTTCTGGTATGAGTGTTCATAGC
ATTTACGCATGAATTTTAAAGCTAAATTTAAAATGTATTTCTAATATTTG
AGATTTCGAATTTGTCCCTATTTAAGGTTGAATATGCTACTTGATTTTAA
AATACGTTTATATGCAAATAAATCTACATAACTTAAAAAAAAAAAAAAAA
AAAAA

LD02709.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Map60-RA 1938 Map60-RA 86..1920 1..1835 9175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5478860..5480239 455..1834 6900 100 Plus
chr2R 21145070 chr2R 5478342..5478795 1..454 2270 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9591365..9592745 455..1835 6905 100 Plus
2R 25286936 2R 9590847..9591300 1..454 2270 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9592564..9593944 455..1835 6905 100 Plus
2R 25260384 2R 9592046..9592499 1..454 2270 100 Plus
Blast to na_te.dros performed 2019-03-15 19:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 968..1017 35..83 130 78.4 Plus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 1226..1334 1760..1655 115 60.4 Minus

LD02709.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:23:41 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5478342..5478795 1..454 100 -> Plus
chr2R 5478860..5480239 455..1834 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:21 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1323 183..1505 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:42 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1323 183..1505 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:43 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1323 183..1505 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:23 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1323 183..1505 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:52 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1323 183..1505 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:45 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 22..1855 1..1834 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:42 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 22..1855 1..1834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:43 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1814 21..1834 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:24 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 22..1855 1..1834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:52 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 1..1814 21..1834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:41 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9590847..9591300 1..454 100 -> Plus
2R 9591365..9592744 455..1834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:41 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9590847..9591300 1..454 100 -> Plus
2R 9591365..9592744 455..1834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:41 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9590847..9591300 1..454 100 -> Plus
2R 9591365..9592744 455..1834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:43 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5478352..5478805 1..454 100 -> Plus
arm_2R 5478870..5480249 455..1834 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:25 Download gff for LD02709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9592046..9592499 1..454 100 -> Plus
2R 9592564..9593943 455..1834 100   Plus

LD02709.pep Sequence

Translation from 182 to 1504

> LD02709.pep
MAIQLDKILQDIAKEKVLHPNNGGASKQEQEEAWARIGRLNKLSVHESRS
IFIVLQKKYEQEKLKGNSAWKLFSLMHQIHQEPKISIKEENDQVPMEEVE
EYEMLEVQEPEDEDDAHQYGQHTNSTGSASSDGESPTKSHSTGSPEKDER
LAYAKPNVDTPRPAIEEKKLLNTLANNTPRSSSLSAAAAVLQKKGITVKK
TPSSAAAPKPAIGQQAPASGQRSSSSRTTIQLPDSLKRKLSEEYTSSSAQ
KKQTKTTSPKQAASSAAATSVHTSVPDQLPAGNNVVHTTTAQLMQVKKER
EDNQTPPPGINIITIPSAQQINGGGGGANSSTAATIASTSVASTNGFSPH
IDELDFKNDIIFGPKINAASSNTPEIINLGNFDNSLPPTFFKNLCNSSRH
ESLGLYVANVMNRLSSRASAKLELSILRAILDVQSDELEQ*

LD02709.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12481-PA 448 GF12481-PA 1..448 1..440 1656 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24091-PA 441 GG24091-PA 1..441 1..440 2040 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22933-PA 455 GH22933-PA 1..455 1..440 1404 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Map60-PA 440 CG1825-PA 1..440 1..440 2216 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18419-PA 465 GI18419-PA 1..465 1..440 1397 68.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17148-PA 437 GL17148-PA 1..437 1..440 1610 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14854-PA 437 GA14854-PA 1..437 1..440 1612 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21138-PA 442 GM21138-PA 1..442 1..440 2255 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10668-PA 442 GD10668-PA 1..442 1..440 2265 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21505-PA 465 GJ21505-PA 1..465 1..440 1464 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15949-PA 472 GK15949-PA 1..472 1..440 1274 65.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19291-PA 441 GE19291-PA 1..441 1..440 2031 93.7 Plus

LD02709.hyp Sequence

Translation from 182 to 1504

> LD02709.hyp
MAIQLDKILQDIAKEKVLHPNNGGASKQEQEEAWARIGRLNKLSVHESRS
IFIVLQKKYEQEKLKGNSAWKLFSLMHQIHQEPKISIKEENDQVPMEEVE
EYEMLEVQEPEDEDDAHQYGQHTNSTGSASSDGESPTKSHSTGSPEKDER
LAYAKPNVDTPRPAIEEKKLLNTLANNTPRSSSLSAAAAVLQKKGITVKK
TPSSAAAPKPAIGQQAPASGQRSSSSRTTIQLPDSLKRKLSEEYTSSSAQ
KKQTKTTSPKQAASSAAATSVHTSVPDQLPAGNNVVHTTTAQLMQVKKER
EDNQTPPPGINIITIPSAQQINGGGGGANSSTAATIASTSVASTNGFSPH
IDELDFKNDIIFGPKINAASSNTPEIINLGNFDNSLPPTFFKNLCNSSRH
ESLGLYVANVMNRLSSRASAKLELSILRAILDVQSDELEQ*

LD02709.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Map60-PA 440 CG1825-PA 1..440 1..440 2216 100 Plus