Clone LD02865 Report

Search the DGRC for LD02865

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:28
Well:65
Vector:pBS SK-
Associated Gene/TranscriptCG2199-RA
Protein status:LD02865.pep: gold
Sequenced Size:2653

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2199 2007-03-28 Manual selection by Ken Wan
CG2199 2008-04-29 Release 5.5 accounting
CG2199 2008-08-15 Release 5.9 accounting
CG2199 2008-12-18 5.12 accounting

Clone Sequence Records

LD02865.complete Sequence

2653 bp (2653 high quality bases) assembled on 2006-01-09

GenBank Submission: BT024237

> LD02865.complete
GTAACTGTAGCCCCGCAAAAAAAAAAACGTGCGCACGTTGTTTGATTTCT
GTTTTTGTTTTTGCTGGAAAACTTAGTGAAAATATGACCAAGGTGCAAAA
AGAGGTGCGATGCGACCATTGCGGCACAAGCCAAGGGTCCAAGAGTGTTT
TTTCAGGTCAGAAGGTGTTCCTGGGCAGGAAAATAACAGACGTACTGGAG
ACCATCACCCACAGAAGCATCCCATCATCCTTGCCCATCAAGATATGCTT
CGTCTGCACCTCCACATTCATGTCCAGCGCGGCACTAATCGAGAAGGTCC
GCGAGACGGTGGACAGGGTACAGGAGCAGCCCGCCAAGAAGACTAAGGTA
GCGGAAATAGAGGAGCCATCGACACAGGAAAGCGATAAGAAGGCGGTTAA
GGTGCCAAAAAAGAACACCACCCTCCGTCAGCGCAGCAAGTCCATAGCAG
CTTTCCCGCCAAGCTTTGTGAATGGAGCTAATACTAATACAGAAATCGAG
ATCATTAGTGCTTCGCCCAAGAAACTCGATAAGACCCCTAAAAAGCAGAT
ATCTCGACTCTTCGAGGATAATCTTAACGATTCGGTTAAGCTGACGCCCG
CCAAAGAGGTGTCGTCTACTAAAAAGGCTTTCCTTAATCTCTTTGGCAAC
GGCGGCAACGATGCCATCGAAGTACTGACCGAGAGCGAGGAAGAGGAGGA
CTCGGATAAAGGTCCTATCACCATTAACACAAATAACTTTCAGTGTCCAG
AGTGCGAATTTCACGCAAAGTTTCCCAAACCGTACAAGGAGCATCTGCAG
AAGGAGCACGGTCTTCAAAGACCACGCATATACCCCTGTACCTTGTGTAT
TAAGACTTTTGGAGTGCTTAAGACTTTGAAAAATCATTTAAGGGACACTC
ACTCACGCACTTTTGAAAGCGAGGCTAAGACTAAGGCGAAGGAAAGCAAG
GAAAAAGAGGCTAAGTCAGGGGCCAAGAATAAAATTGACGCAAAGGCAAA
GGAGACCAATGCTGTGAGTCAAAGGAAGAAGCCAAAAGAAAAAAAGTCCA
AAGAGAAAAAGACAGAGATCAAATGTAATGTTGAAACCAAAGTGGTTGAC
GAAATCGACGACCAAGTGAACAACAAAAAGGGCACAGATAGTGAGGACGC
AGACCAGACCCAGGCTACCAAAATCGCCTCCTTTAAAGCGCTAAATGAGT
CATTAATGAAGAAAAGGATGTTAGAGAACGTGATCGACTCGGAATATACA
TTTGCCATCAATGGATCCAGCGCCTCCACTCCCAGGGCGGATTCGAATAA
TTTTCAGTGCGAGATCTGCGACTGTGAGCTGATGACCGCCAAGCAGATGC
AGGAGCACATGAAGACCGTCCACAGCATCGACAAGCCAAAGGTTTTCAAG
TGCCACGTCTGCGAGAAGAGTTTGGCTACCAAACAGTCGCTGAAAACGCA
CATGACTCTACATGCCGACGGTGCTGAAGCGCCGAACTCCAGCAAGCGAA
AGATTCTGCAGGACGAGGATGAGGACGTAGACATTCTGGGTACGACTCAG
ATTGAAAACACGGCCGAGAAGGTTGAAGGACCTAAGAAATCACAACAAAG
CCCTACTAAAGCCGCAAAGTTCACCAACCGAAAGATTCTGCAAGAAGAGG
ATGAGGTTGTGGAAATTGTGGACGCTTTTAAGACTGACAACACCGCGGAG
GATGATGAAGGACCCGCAGAAGAAAAGATTATACGATCCAGGAACAACAT
TCAGCACCAGGTCGATGGAGGCATGATTGCACCTCGGTCGCCAGCTAAAA
AGACAAAGAAGACCAGTCACGTAGATCTGTCTGTGTCCACAACCAATGGC
AATTCGCCTGCAAAGTCAGAAAAACGAAAAAAACAAGACAAATCTGAGGA
CACGCTCCCCTCATCTGATGTAGACATAGTGGAAGAAATCAACTACAACG
TGCGGCCGCACAAAAAGGCTCGCCTGGAGTCCATTGGTGACTCAACAGCC
GACGAGTCGACCCTCAGCTGCGACCGGTGCGGGAAGTTCGTCAAATCGCG
TCAACGCTTGGACTCGCACATGGAGAAAAAGCACGCCGCCAAACTACAGT
GCACCCTATGCAAGGAAGTCTACCAGAACCAAATGGATTACGTGGCTCAC
TTCTCGAACTGTGGTTCCGAAGGTGGACTTCCATGCGGCGTAGCCAATTG
CAAGAAGGTCTTCACGGAGGCCAACTTCCTATCCTCGCACCTGCGCAAGC
GCCACTAGTTGCACTAGACTCCCTTTTATTTTTGTTTTTCATTTCATTCT
CTTGACCAATGTAGTTTTACGTTAGCTTATTGCTATGTTAAGTATAATTC
TTTGAATTTTCAATGGCTAACTTTGAAAGGGTCTATATAAAGTTGATAAA
AGTCGATGAAAACTGCAATTTATAACAAGGTTACTTCATACATTTTTAAC
TATTATTAAGTTCAATTCAAAAGATAAGTTTAATTTGTATATTAAGACTT
TATTATAACCGCATTGGTTACACCACTTGTACTCACCAAGAGTATATAAA
TTAGCTTGAATGTAATAAACATATTTGTACTGAGCGATGAACTGTTAATA
AAAAATGGCAAAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LD02865.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2199-RA 2847 CG2199-RA 225..2842 1..2618 13090 100 Plus
CG2199-RB 2579 CG2199-RB 28..2574 72..2618 12720 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1338986..1341384 2617..219 11995 100 Minus
chr3L 24539361 chr3L 1341451..1341668 218..1 1090 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1339462..1341861 2618..219 12000 100 Minus
3L 28110227 3L 1341928..1342145 218..1 1090 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1339462..1341861 2618..219 12000 100 Minus
3L 28103327 3L 1341928..1342145 218..1 1090 100 Minus
Blast to na_te.dros performed 2019-03-15 21:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 3993..4062 2403..2326 118 69.2 Minus

LD02865.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:44:56 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1338986..1341384 219..2617 100 <- Minus
chr3L 1341451..1341668 1..218 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:24 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RB 16..2202 72..2258 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:39:47 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RB 16..2202 72..2258 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:56:33 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RB 16..2202 72..2258 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:15:18 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RB 16..2202 72..2258 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:27 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RB 16..2202 72..2258 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:12:03 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RA 225..2841 1..2617 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:39:46 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RA 225..2841 1..2617 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:56:33 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RA 227..2843 1..2617 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:18 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RA 225..2841 1..2617 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:27 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
CG2199-RA 227..2843 1..2617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:56 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1339463..1341861 219..2617 100 <- Minus
3L 1341928..1342145 1..218 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:56 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1339463..1341861 219..2617 100 <- Minus
3L 1341928..1342145 1..218 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:56 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1339463..1341861 219..2617 100 <- Minus
3L 1341928..1342145 1..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:56:33 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1339463..1341861 219..2617 100 <- Minus
arm_3L 1341928..1342145 1..218 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:02:26 Download gff for LD02865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1341928..1342145 1..218 100   Minus
3L 1339463..1341861 219..2617 100 <- Minus

LD02865.pep Sequence

Translation from 2 to 2257

> LD02865.pep
NCSPAKKKTCARCLISVFVFAGKLSENMTKVQKEVRCDHCGTSQGSKSVF
SGQKVFLGRKITDVLETITHRSIPSSLPIKICFVCTSTFMSSAALIEKVR
ETVDRVQEQPAKKTKVAEIEEPSTQESDKKAVKVPKKNTTLRQRSKSIAA
FPPSFVNGANTNTEIEIISASPKKLDKTPKKQISRLFEDNLNDSVKLTPA
KEVSSTKKAFLNLFGNGGNDAIEVLTESEEEEDSDKGPITINTNNFQCPE
CEFHAKFPKPYKEHLQKEHGLQRPRIYPCTLCIKTFGVLKTLKNHLRDTH
SRTFESEAKTKAKESKEKEAKSGAKNKIDAKAKETNAVSQRKKPKEKKSK
EKKTEIKCNVETKVVDEIDDQVNNKKGTDSEDADQTQATKIASFKALNES
LMKKRMLENVIDSEYTFAINGSSASTPRADSNNFQCEICDCELMTAKQMQ
EHMKTVHSIDKPKVFKCHVCEKSLATKQSLKTHMTLHADGAEAPNSSKRK
ILQDEDEDVDILGTTQIENTAEKVEGPKKSQQSPTKAAKFTNRKILQEED
EVVEIVDAFKTDNTAEDDEGPAEEKIIRSRNNIQHQVDGGMIAPRSPAKK
TKKTSHVDLSVSTTNGNSPAKSEKRKKQDKSEDTLPSSDVDIVEEINYNV
RPHKKARLESIGDSTADESTLSCDRCGKFVKSRQRLDSHMEKKHAAKLQC
TLCKEVYQNQMDYVAHFSNCGSEGGLPCGVANCKKVFTEANFLSSHLRKR
H*

LD02865.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10061-PA 925 GF10061-PA 3..528 29..526 816 36.9 Plus
Dana\GF10061-PA 925 GF10061-PA 440..922 246..751 659 35.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14604-PA 717 GG14604-PA 2..714 28..751 2822 78.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16227-PA 764 GH16227-PA 345..761 409..751 414 28.8 Plus
Dgri\GH13393-PA 1385 GH13393-PA 948..1185 254..487 169 27.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2199-PB 733 CG2199-PB 6..733 24..751 3750 99.9 Plus
CG2199-PC 724 CG2199-PC 1..724 28..751 3736 100 Plus
CG2199-PA 724 CG2199-PA 1..724 28..751 3736 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13373-PA 799 GI13373-PA 632..795 608..751 349 41.8 Plus
Dmoj\GI13373-PA 799 GI13373-PA 10..304 35..309 319 32.8 Plus
Dmoj\GI13373-PA 799 GI13373-PA 298..418 380..490 201 36.4 Plus
Dmoj\GI20716-PA 1347 GI20716-PA 926..1153 254..487 165 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16070-PA 725 GL16070-PA 1..723 28..751 836 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15296-PA 693 GA15296-PA 1..691 28..751 808 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14218-PA 717 GM14218-PA 6..714 24..751 3207 86.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13481-PA 717 GD13481-PA 6..714 24..751 3161 86.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13203-PA 878 GJ13203-PA 744..874 618..751 360 50 Plus
Dvir\GJ13203-PA 878 GJ13203-PA 10..323 35..305 321 29 Plus
Dvir\GJ13301-PA 1313 GJ13301-PA 899..1124 254..487 165 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12499-PA 659 GK12499-PA 313..655 391..751 557 36.5 Plus
Dwil\GK15002-PA 646 GK15002-PA 541..643 646..751 252 43.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20965-PA 712 GE20965-PA 2..709 28..751 2718 77.4 Plus

LD02865.hyp Sequence

Translation from 2 to 2257

> LD02865.hyp
NCSPAKKKTCARCLISVFVFAGKLSENMTKVQKEVRCDHCGTSQGSKSVF
SGQKVFLGRKITDVLETITHRSIPSSLPIKICFVCTSTFMSSAALIEKVR
ETVDRVQEQPAKKTKVAEIEEPSTQESDKKAVKVPKKNTTLRQRSKSIAA
FPPSFVNGANTNTEIEIISASPKKLDKTPKKQISRLFEDNLNDSVKLTPA
KEVSSTKKAFLNLFGNGGNDAIEVLTESEEEEDSDKGPITINTNNFQCPE
CEFHAKFPKPYKEHLQKEHGLQRPRIYPCTLCIKTFGVLKTLKNHLRDTH
SRTFESEAKTKAKESKEKEAKSGAKNKIDAKAKETNAVSQRKKPKEKKSK
EKKTEIKCNVETKVVDEIDDQVNNKKGTDSEDADQTQATKIASFKALNES
LMKKRMLENVIDSEYTFAINGSSASTPRADSNNFQCEICDCELMTAKQMQ
EHMKTVHSIDKPKVFKCHVCEKSLATKQSLKTHMTLHADGAEAPNSSKRK
ILQDEDEDVDILGTTQIENTAEKVEGPKKSQQSPTKAAKFTNRKILQEED
EVVEIVDAFKTDNTAEDDEGPAEEKIIRSRNNIQHQVDGGMIAPRSPAKK
TKKTSHVDLSVSTTNGNSPAKSEKRKKQDKSEDTLPSSDVDIVEEINYNV
RPHKKARLESIGDSTADESTLSCDRCGKFVKSRQRLDSHMEKKHAAKLQC
TLCKEVYQNQMDYVAHFSNCGSEGGLPCGVANCKKVFTEANFLSSHLRKR
H*

LD02865.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2199-PB 733 CG2199-PB 6..733 24..751 3750 99.9 Plus
CG2199-PC 724 CG2199-PC 1..724 28..751 3736 100 Plus
CG2199-PA 724 CG2199-PA 1..724 28..751 3736 100 Plus