Clone LD02945 Report

Search the DGRC for LD02945

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:29
Well:45
Vector:pBS SK-
Associated Gene/TranscriptEro1L-RB
Protein status:LD02945.pep: gold
Sequenced Size:2066

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1333 2003-01-01 Sim4 clustering to Release 3
Ero1L 2008-04-29 Release 5.5 accounting
Ero1L 2008-08-15 Release 5.9 accounting
Ero1L 2008-12-18 5.12 accounting

Clone Sequence Records

LD02945.complete Sequence

2066 bp (2066 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021422

> LD02945.complete
AATGTTGCTGCTTCGAAACGCAAATGCTCGCTAAACTCGTGAAATTGGGA
TTCGGAATCGCAGGTGCGAAATCACACGGGTGGGGAAATCGGATTCAGAT
GCACTCCGTCGGCGAAGCGCAAAACAACTGAGCACGCAACAACAAAAACA
GTGACAGCAACAGTCATAACAATAGCAACACTCACATCAAAACACAATGA
CAACACGCACGGTGCAGAGAAATCTGTGGGCCTCCGCTGCGGTGGTCCTA
GTTCTGCTCCTGCTCTGGACGGACACCACTGGAGGCTATTTTGCAGCCAT
CGATGAGACGGAGACTAGCAAAAACTGCTTCTGCGAGTTGGAGGGATCTA
TAAACGACTGCAGCTGCGATGTGGACACGGTGGATCACTTTAACAACATG
AAAATCTATCCGCGATTGCAGAGTCTGCTGGTGAAGAACTTCTTCCGCTT
CTACAAGGTGAACCTGCGGCAGGAGTGCCCCTTCTGGCCGGATGACAGTC
GCTGTGCGATGCGCTTCTGCCAGGTGGAGAACTGCGAGGAGCAAGCGATT
CCCCAGGGCATCAAGGACAAGGGAGAGCACAAGGAGAAGGCCGCGTTTAA
ATACACGCGCGAGGCGCAAGTTGGGGGCTCAGCGTGCTCGGATGGAGAGG
ATTTCGACAGCTCTCTGGGTTTCCTGGACACGAGCATAAGTGATCAGGCG
CATCGGGAATTCGAACTGTGGGCGAAGCATGATGAGGCGGAAGAGGACTT
TTGCATCGTGGACGATCATGAGGAGGGATCCCAGTATGTGGATCTGCTCC
TAAATCCTGAGCGGTACACCGGCTATAAGGGCGAATCGGCACATCGCATC
TGGAAGAGCATCTATCTGGAGAACTGCTTCGGTGGCAACAACGAGACGGC
TAACAAGTTCTCTAACTACGTGCCTCATTTGGATTTGCGAAATGTGTGCT
TGGAGCAGCGTGCCTTTTATCGCATTATTTCTGGCCTGCACTCTAGTATC
AACATTCATCTGTGCTCCAAATACCTGCTGTCAGAGTCAAAGGACTTCTT
AGATCCGCAGGGCATCTGGGGTCCCAACGTAAAGGAGTTTAAACGACGCT
TTAGTCCAGAAACCACAAGCGGTGAAGGTCCGCACTGGCTGCGAAACCTC
TACTTCATCTATCTGATAGAACTGCGCGCCTTGGCTAAGGCTGCTCCTTA
TCTGCGGCGAGAAGATTACTACACGGGCATCGCAGAGGAGGATGATGAGG
TTAAACTAGCCATCAATGATATGTTGAGTGTCATAGAAAATTTTCAATCC
CACTTCGACGAGAACGCCCTCTTCAGTAATGGAATCGCTTCTATTAAGTT
CAAGCACGACTATAAGGAAAAGTTCCGAAACATATCCCGCATCATGAGCT
GCGTAGGCTGCGACAAGTGCAAACTGTGGGGGAAGCTGCAGACGCAGGGA
TTGGGTACTGCTTTAAAGATTCTCTACTCAGAGAAGCTCAATCTGGCCAC
GGAAAGCGGGTTGTGGGACAAGCCGCACATCGAAGCGGATCCCATCTTCA
GGCTGTCGCGAACAGAGATTGTAGCTCTATTTAATGCGTTTGGCAGACTA
TCCAACAGTATATACGAGATGGAGAATTTCCGGTGCGTGCTGAGGTAACC
CATCCAGACTGGACTAACCGAGCGACGAGCCGGATCTCATTCGCCTCACA
TGAGCAGCTAGTTAATTCATACGCACATCGCTGGGGCTGCGTCTTGGACT
TCCTACTGAATGCGGTTTCCCTCCCATAGTTCGTAACATTTTTGAGGCCA
GAGGCTAGTAACCCCAGGATAGCTGCTTCCCTGTACATACAAACTATTAC
CCTAGGCTACTTGTACTTTAGCGCACCGTATCACCCTAAAAAAAACCAAA
TGACAAAAAAATAACCCATGCAGGATGCAGGTGTTTATTGTAAGTTAGCA
TAGTATTTATTGTATCTGGAGGAGTTTGTGAGCGGAACTTAATGAGCAAG
TAAACGCATTGTGCAATACCAAGACCTTACGACACAAGGCGCTAAAATAA
AAAAAAAAAAAAAAAA

LD02945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ero1L-RB 2265 Ero1L-RB 191..2241 1..2051 10255 100 Plus
Ero1L.a 2163 Ero1L.a 151..2141 61..2051 9955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4171611..4172296 602..1287 3430 100 Plus
chr3L 24539361 chr3L 4172720..4173175 1593..2048 2280 100 Plus
chr3L 24539361 chr3L 4169842..4170182 1..341 1690 99.7 Plus
chr3L 24539361 chr3L 4172354..4172662 1288..1596 1545 100 Plus
chr3L 24539361 chr3L 4170598..4170863 336..601 1330 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4172225..4172910 602..1287 3430 100 Plus
3L 28110227 3L 4173334..4173792 1593..2051 2295 100 Plus
3L 28110227 3L 4170456..4170796 1..341 1690 99.7 Plus
3L 28110227 3L 4172968..4173276 1288..1596 1545 100 Plus
3L 28110227 3L 4171212..4171477 336..601 1330 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4172225..4172910 602..1287 3430 100 Plus
3L 28103327 3L 4173334..4173792 1593..2051 2295 100 Plus
3L 28103327 3L 4170456..4170796 1..341 1690 99.7 Plus
3L 28103327 3L 4172968..4173276 1288..1596 1545 100 Plus
3L 28103327 3L 4171212..4171477 336..601 1330 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:59:48 has no hits.

LD02945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:00:27 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4170600..4170863 338..601 100 -> Plus
chr3L 4169842..4169977 1..136 100 == Plus
chr3L 4170047..4170178 206..337 100 -> Plus
chr3L 4171611..4172296 602..1287 100 -> Plus
chr3L 4172354..4172662 1288..1596 100 -> Plus
chr3L 4172724..4173175 1597..2048 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:29 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 1..1452 197..1648 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:24:20 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 1..1452 197..1648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:59 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 1..1452 197..1648 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:08:34 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 1..1452 197..1648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:54:23 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 1..1452 197..1648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:26:20 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 191..2238 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:24:20 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 191..2238 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:59 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 53..2100 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:08:34 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 191..2238 1..2048 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:54:23 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
Ero1L-RB 53..2100 1..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:27 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4170456..4170792 1..337 100 -> Plus
3L 4171214..4171477 338..601 100 -> Plus
3L 4172225..4172910 602..1287 100 -> Plus
3L 4172968..4173276 1288..1596 100 -> Plus
3L 4173338..4173789 1597..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:27 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4170456..4170792 1..337 100 -> Plus
3L 4171214..4171477 338..601 100 -> Plus
3L 4172225..4172910 602..1287 100 -> Plus
3L 4172968..4173276 1288..1596 100 -> Plus
3L 4173338..4173789 1597..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:27 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4170456..4170792 1..337 100 -> Plus
3L 4171214..4171477 338..601 100 -> Plus
3L 4172225..4172910 602..1287 100 -> Plus
3L 4172968..4173276 1288..1596 100 -> Plus
3L 4173338..4173789 1597..2048 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:59 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4170456..4170792 1..337 100 -> Plus
arm_3L 4171214..4171477 338..601 100 -> Plus
arm_3L 4172225..4172910 602..1287 100 -> Plus
arm_3L 4172968..4173276 1288..1596 100 -> Plus
arm_3L 4173338..4173789 1597..2048 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:44:49 Download gff for LD02945.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4170456..4170792 1..337 100 -> Plus
3L 4171214..4171477 338..601 100 -> Plus
3L 4172225..4172910 602..1287 100 -> Plus
3L 4172968..4173276 1288..1596 100 -> Plus
3L 4173338..4173789 1597..2048 100   Plus

LD02945.pep Sequence

Translation from 196 to 1647

> LD02945.pep
MTTRTVQRNLWASAAVVLVLLLLWTDTTGGYFAAIDETETSKNCFCELEG
SINDCSCDVDTVDHFNNMKIYPRLQSLLVKNFFRFYKVNLRQECPFWPDD
SRCAMRFCQVENCEEQAIPQGIKDKGEHKEKAAFKYTREAQVGGSACSDG
EDFDSSLGFLDTSISDQAHREFELWAKHDEAEEDFCIVDDHEEGSQYVDL
LLNPERYTGYKGESAHRIWKSIYLENCFGGNNETANKFSNYVPHLDLRNV
CLEQRAFYRIISGLHSSINIHLCSKYLLSESKDFLDPQGIWGPNVKEFKR
RFSPETTSGEGPHWLRNLYFIYLIELRALAKAAPYLRREDYYTGIAEEDD
EVKLAINDMLSVIENFQSHFDENALFSNGIASIKFKHDYKEKFRNISRIM
SCVGCDKCKLWGKLQTQGLGTALKILYSEKLNLATESGLWDKPHIEADPI
FRLSRTEIVALFNAFGRLSNSIYEMENFRCVLR*

LD02945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10559-PA 484 GF10559-PA 1..484 1..483 2403 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15199-PA 483 GG15199-PA 1..483 1..483 2552 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15928-PA 486 GH15928-PA 3..486 2..483 2220 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ero1L-PB 483 CG1333-PB 1..483 1..483 2594 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16577-PA 486 GI16577-PA 3..486 2..483 2304 87 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12831-PA 485 GL12831-PA 6..485 3..483 2400 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28655-PA 485 GA28655-PA 6..485 3..483 2403 92.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14630-PA 483 GM14630-PA 1..483 1..483 2573 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12829-PA 486 GJ12829-PA 3..486 2..483 2238 85.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12704-PA 487 GK12704-PA 1..487 1..483 2332 88.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21418-PA 483 GE21418-PA 1..483 1..483 2549 97.7 Plus

LD02945.hyp Sequence

Translation from 196 to 1647

> LD02945.hyp
MTTRTVQRNLWASAAVVLVLLLLWTDTTGGYFAAIDETETSKNCFCELEG
SINDCSCDVDTVDHFNNMKIYPRLQSLLVKNFFRFYKVNLRQECPFWPDD
SRCAMRFCQVENCEEQAIPQGIKDKGEHKEKAAFKYTREAQVGGSACSDG
EDFDSSLGFLDTSISDQAHREFELWAKHDEAEEDFCIVDDHEEGSQYVDL
LLNPERYTGYKGESAHRIWKSIYLENCFGGNNETANKFSNYVPHLDLRNV
CLEQRAFYRIISGLHSSINIHLCSKYLLSESKDFLDPQGIWGPNVKEFKR
RFSPETTSGEGPHWLRNLYFIYLIELRALAKAAPYLRREDYYTGIAEEDD
EVKLAINDMLSVIENFQSHFDENALFSNGIASIKFKHDYKEKFRNISRIM
SCVGCDKCKLWGKLQTQGLGTALKILYSEKLNLATESGLWDKPHIEADPI
FRLSRTEIVALFNAFGRLSNSIYEMENFRCVLR*

LD02945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ero1L-PB 483 CG1333-PB 1..483 1..483 2594 100 Plus