Clone LD02975 Report

Search the DGRC for LD02975

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:29
Well:75
Vector:pBS SK-
Associated Gene/TranscriptCG9281-RB
Protein status:LD02975.pep: gold
Preliminary Size:2425
Sequenced Size:2585

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9281 2001-10-10 Blastp of sequenced clone
CG9281 2003-01-01 Sim4 clustering to Release 3
CG9281 2008-04-29 Release 5.5 accounting
CG9281 2008-08-15 Release 5.9 accounting
CG9281 2008-12-18 5.12 accounting

Clone Sequence Records

LD02975.complete Sequence

2585 bp (2585 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061059

> LD02975.complete
TTCAGTCGTCTCTCTCTTTTTCTACCGAAAACGGTAACAGGCAGCAGGCA
CTTTTCAGCAGCTGCTCCGTGCGTGCGTGTGTGTGTGCGAGATCCGAACC
GAACCGATCTGTTCCGTTACGTTCCGTTACCGTAGACGTCGCCGTACCGT
TATCCTTCGCGAACTTCAAAGGACACTCCTTTGCACTGCTCTCGCCCATC
ATCCTTGATTGTCAGTCAAGTCCAATCGACGCCAAGCCGGAATAATGTCA
TCCGCCGCGAAGAAACGGGAGGCGCAGAAGAAGAAGGATGCGCGCAACAA
GAAGATCCAACAGATACCCTCCACCAAGAAGGCCAATGGTGTCCCGGAAC
GCGAACTGACCGAGGAGGAGAAGCTGTGCGCCAAGCTGGAGGAGGAGGCC
CGGATCAGTGCGGAGGCCCGATCCTGCACCGGATCGCTGGCGGTGCATCC
GCGTTCCCGTGACGTCAAGATCGCCAACTTTTCGATCACGTTCTTTGGCT
CCGAGCTGCTGCAGGACACCATGCTGGAGTTGAATTGCGGGCGTCGCTAC
GGTCTGATTGGCCTGAACGGATGCGGTAAGTCCTCGCTGCTGGCCGTGCT
TGGCGGCAGGGAGGTGCCGGTACCGCCGCACATCGACATCTTCCACTTGA
CGCGCGAAATCCCGGCCAGTTCAAAGAGTGCGCTGCAGTGCGTCATGGAG
GTGGATGAGGAGCGCATTAAGCTAGAGAAGCTGGCCGAAGAGCTGGCCAT
GAGCGAGGAAGATGATGCTCAGGAGCAGCTGATCGACATCTACGAGCGGC
TGGACGATATGTCCGCCGATCTGGCAGAGGTCAAGGCGGCCCGCATCCTT
CACGGTCTTGGCTTCGACAAGGCCATGCAACAGAAACAGGCCAAGGACTT
CTCAGGTGGTTGGCGTATGCGTATCGCCTTGGCCCGCGCGCTGTTTGTGA
AGCCCCATCTGCTGTTGCTGGACGAGCCGACGAATCACTTGGATTTGGAC
GCCTGTGTGTGGCTGGAGGAGGAGCTTAAGACATACAAGCGAATCCTGGT
GCTCATCTCGCACTCGCAGGATTTCCTCAACGGTGTCTGCACAAACATCA
TTCACCTGACGGGCAAGCGACTCAAGTACTATACGGGTAACTATGAGGCC
TTTGTGCGCACACGCATGGAACTGCTGGAAAACCAGATGAAGCAGTACAA
CTGGGAACAGGACCAGATTTCGCACATGAAGAACTACATTGCTCGATTCG
GTCACGGTTCCGCCAAGTTGGCGCGACAGGCGCAGTCCAAGGAGAAGACG
CTGGCCAAGATGGTTGCTCAGGGACTCACAGAGAAGGTGTCCGACGATAA
GGTGCTCAACTTTTACTTCCCATCGTGCGGCAAGGTGCCGCCACCCGTGA
TTATGGTTCAGAACGTGAATTTCCGATACAACGATGAGACACCGTGGATC
TACAAAAATCTGGAGTTCGGAATTGATCTAGACACACGTCTCGCTTTGGT
TGGACCCAACGGAGCTGGCAAGTCCACGTTGCTGAAGCTGCTTTATGGCG
ATCTGGTGCCCACCTCCGGCATGATCCGCAAGAACTCCCATCTGCGCATC
GCCCGCTACCACCAGCATCTGCACGAGCTGCTCGATTTGGATGCCAGTCC
GCTAGAGTACATGATGCGTGCCTTCCCTGACGTCAAGGAGAAGGAGGAGA
TGCGCAAGATTATTGGTCGCTACGGCCTCACTGGTCGCCAGCAGGTGTGT
CCGATTCGCCAGCTCTCCGATGGCCAGCGGTGCCGCGTGGTGTTCGCCTG
GCTCGCCTGGCAGGTGCCCCATCTTCTGCTACTTGACGAACCCACCAATC
ACTTGGACATGGAGACAATCGATGCGCTCGCGGATGCGATCAACGATTTC
GATGGCGGCATGGTGCTAGTTAGTCACGATTTCCGTCTGATTAATCAGGT
GGCTGAGGAGATTTGGGTATGCGAAAAGGAGACGGTAACCAAGTGGAAGG
GCGGCATTCTGGACTACAAGGATCATCTGAAGAACAAGATCACCTCCGAG
AACGAGAAGAAGGCCAAGGCGGGAAAGTAGATATATCCCATATCCAGTGG
ATAGATAGCTGCCAACGGCCACACACTCGCACACACACAGTCGCGCATCC
AAAACACCCAAACACACAACCAAACGCATCCCTCAACCGAAAGGACATTC
AGACCGCTATCCCTTCTCTTCAATAGGCGGCGGGCGACATCCGGCTATTG
GGCTGCCCGTTCGCTGCAATCCATTCTGTGCGAAATTAGTTTTGCGTTTA
CTCTACGCTATAGTGAAGTCGCAATTCGATCGGCCAACCAGTAAAATAAT
CAACAATAAAACTAGAACGAACCGAACACCCAATCCAAACCTATCCAATC
ACAACCATGCGTAACACAACCGTTGACAACTCAACAGGAACACACAAATT
TTAGCTGAATTTTTTCTTTTTACGTGTCGAATTAAAGTTATAAAATTATA
AATATATACAATTACGAAGTGGACAGGCAGAAAGAACTATAACTTATAAA
TACAACCAACCAACTATAAAAAAAAAAAAAAAAAA

LD02975.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9281-RB 3466 CG9281-RB 248..2822 1..2575 12830 99.8 Plus
CG9281-RC 3051 CG9281-RC 67..2407 235..2575 11660 99.8 Plus
CG9281.a 3040 CG9281.a 68..2408 235..2575 11660 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15598141..15598814 908..235 3370 100 Minus
chrX 22417052 chrX 15596276..15596897 2567..1946 3095 99.8 Minus
chrX 22417052 chrX 15596957..15597497 1950..1410 2705 100 Minus
chrX 22417052 chrX 15597563..15598071 1411..903 2545 100 Minus
chrX 22417052 chrX 15600136..15600371 236..1 1180 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15708311..15708984 908..235 3370 100 Minus
X 23542271 X 15706438..15707067 2575..1946 3105 99.5 Minus
X 23542271 X 15707127..15707667 1950..1410 2705 100 Minus
X 23542271 X 15707733..15708241 1411..903 2545 100 Minus
X 23542271 X 15710306..15710541 236..1 1180 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15716409..15717082 908..235 3370 100 Minus
X 23527363 X 15714536..15715165 2575..1946 3105 99.5 Minus
X 23527363 X 15715225..15715765 1950..1410 2705 100 Minus
X 23527363 X 15715831..15716339 1411..903 2545 100 Minus
X 23527363 X 15718404..15718639 236..1 1180 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:36:05 has no hits.

LD02975.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:37:15 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15596276..15596894 1949..2567 95 <- Minus
chrX 15596959..15597495 1412..1948 100 <- Minus
chrX 15597563..15598068 906..1411 100 <- Minus
chrX 15598144..15598812 237..905 100 <- Minus
chrX 15600136..15600371 1..236 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:34 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RC 1..1836 245..2080 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:30 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RC 1..1836 245..2080 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:19 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 1..1836 245..2080 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:28 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RC 1..1836 245..2080 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:14 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 1..1836 245..2080 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:38 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 58..2624 1..2567 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:30 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 58..2624 1..2567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:19 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 1..2565 3..2567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:28 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 58..2624 1..2567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:14 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
CG9281-RB 1..2565 3..2567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:15 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
X 15707733..15708238 906..1411 100 <- Minus
X 15706446..15707064 1949..2567 99 <- Minus
X 15707129..15707665 1412..1948 100 <- Minus
X 15708314..15708982 237..905 100 <- Minus
X 15710306..15710541 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:15 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
X 15707733..15708238 906..1411 100 <- Minus
X 15706446..15707064 1949..2567 99 <- Minus
X 15707129..15707665 1412..1948 100 <- Minus
X 15708314..15708982 237..905 100 <- Minus
X 15710306..15710541 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:15 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
X 15707733..15708238 906..1411 100 <- Minus
X 15706446..15707064 1949..2567 99 <- Minus
X 15707129..15707665 1412..1948 100 <- Minus
X 15708314..15708982 237..905 100 <- Minus
X 15710306..15710541 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:19 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15600479..15601097 1949..2567 99 <- Minus
arm_X 15601162..15601698 1412..1948 100 <- Minus
arm_X 15601766..15602271 906..1411 100 <- Minus
arm_X 15602347..15603015 237..905 100 <- Minus
arm_X 15604339..15604574 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:35 Download gff for LD02975.complete
Subject Subject Range Query Range Percent Splice Strand
X 15714544..15715162 1949..2567 99 <- Minus
X 15715227..15715763 1412..1948 100 <- Minus
X 15715831..15716336 906..1411 100 <- Minus
X 15716412..15717080 237..905 100 <- Minus
X 15718404..15718639 1..236 100   Minus

LD02975.pep Sequence

Translation from 244 to 2079

> LD02975.pep
MSSAAKKREAQKKKDARNKKIQQIPSTKKANGVPERELTEEEKLCAKLEE
EARISAEARSCTGSLAVHPRSRDVKIANFSITFFGSELLQDTMLELNCGR
RYGLIGLNGCGKSSLLAVLGGREVPVPPHIDIFHLTREIPASSKSALQCV
MEVDEERIKLEKLAEELAMSEEDDAQEQLIDIYERLDDMSADLAEVKAAR
ILHGLGFDKAMQQKQAKDFSGGWRMRIALARALFVKPHLLLLDEPTNHLD
LDACVWLEEELKTYKRILVLISHSQDFLNGVCTNIIHLTGKRLKYYTGNY
EAFVRTRMELLENQMKQYNWEQDQISHMKNYIARFGHGSAKLARQAQSKE
KTLAKMVAQGLTEKVSDDKVLNFYFPSCGKVPPPVIMVQNVNFRYNDETP
WIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNSHL
RIARYHQHLHELLDLDASPLEYMMRAFPDVKEKEEMRKIIGRYGLTGRQQ
VCPIRQLSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAIN
DFDGGMVLVSHDFRLINQVAEEIWVCEKETVTKWKGGILDYKDHLKNKIT
SENEKKAKAGK*

LD02975.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22241-PA 617 GF22241-PA 1..617 1..611 3187 96.3 Plus
Dana\GF23707-PA 708 GF23707-PA 174..704 70..599 1089 42.2 Plus
Dana\GF19482-PA 911 GF19482-PA 344..887 56..592 1080 40.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19381-PA 611 GG19381-PA 1..611 1..611 3284 99.8 Plus
Dere\GG16045-PA 708 GG16045-PA 174..704 70..599 1093 42.2 Plus
Dere\GG18434-PA 916 GG18434-PA 349..892 56..592 1069 40.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17634-PA 614 GH17634-PA 1..612 1..610 3183 96.6 Plus
Dgri\GH14627-PA 708 GH14627-PA 174..704 70..599 1088 42.2 Plus
Dgri\GH24766-PA 929 GH24766-PA 362..905 56..592 1071 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9281-PD 611 CG9281-PD 1..611 1..611 3173 100 Plus
CG9281-PC 611 CG9281-PC 1..611 1..611 3173 100 Plus
CG9281-PB 611 CG9281-PB 1..611 1..611 3173 100 Plus
CG1703-PB 901 CG1703-PB 287..884 2..599 1059 37.1 Plus
CG1703-PA 901 CG1703-PA 287..884 2..599 1059 37.1 Plus
CG9330-PA 708 CG9330-PA 91..708 9..603 1055 38.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16072-PA 615 GI16072-PA 1..613 1..610 3167 96.1 Plus
Dmoj\GI13514-PA 708 GI13514-PA 174..704 70..599 1096 42.4 Plus
Dmoj\GI15800-PA 904 GI15800-PA 337..880 56..592 1086 41.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16523-PA 611 GL16523-PA 1..611 1..611 3231 98 Plus
Dper\GL20943-PA 708 GL20943-PA 174..704 70..599 1083 41.6 Plus
Dper\GL12895-PA 436 GL12895-PA 22..432 56..458 801 40 Plus
Dper\GL12895-PA 436 GL12895-PA 44..273 392..592 172 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21666-PA 611 GA21666-PA 1..611 1..611 3236 98.2 Plus
Dpse\GA21707-PA 708 GA21707-PA 174..704 70..599 1083 41.6 Plus
Dpse\GA14282-PA 924 GA14282-PA 358..900 56..592 1077 40.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22536-PA 611 GM22536-PA 1..611 1..611 3274 99.5 Plus
Dsec\GM19597-PA 708 GM19597-PA 174..704 70..599 1093 42.2 Plus
Dsec\GM13097-PA 902 GM13097-PA 335..878 56..592 1079 40.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15784-PA 611 GD15784-PA 1..611 1..611 3276 99.5 Plus
Dsim\GD14814-PA 708 GD14814-PA 174..704 70..599 1095 42.2 Plus
Dsim\GD17036-PA 365 GD17036-PA 122..341 370..592 513 43.9 Plus
Dsim\GD17036-PA 365 GD17036-PA 161..347 96..313 153 22.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15717-PA 615 GJ15717-PA 1..613 1..610 3199 96.7 Plus
Dvir\GJ18654-PA 914 GJ18654-PA 347..890 56..592 1087 41.3 Plus
Dvir\GJ11875-PA 708 GJ11875-PA 174..704 70..599 1086 42.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10328-PA 611 GK10328-PA 1..611 1..611 3215 97.2 Plus
Dwil\GK25023-PA 890 GK25023-PA 323..866 56..592 1077 41 Plus
Dwil\GK25825-PA 710 GK25825-PA 175..706 70..599 1076 41.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16028-PA 611 GE16028-PA 1..611 1..611 3271 99.5 Plus
Dyak\GE19611-PA 708 GE19611-PA 174..704 70..599 1093 42.2 Plus
Dyak\GE23211-PA 711 GE23211-PA 174..707 70..599 1077 41.9 Plus
Dyak\GE15656-PA 907 GE15656-PA 340..883 56..592 1077 40.6 Plus

LD02975.hyp Sequence

Translation from 244 to 2079

> LD02975.hyp
MSSAAKKREAQKKKDARNKKIQQIPSTKKANGVPERELTEEEKLCAKLEE
EARISAEARSCTGSLAVHPRSRDVKIANFSITFFGSELLQDTMLELNCGR
RYGLIGLNGCGKSSLLAVLGGREVPVPPHIDIFHLTREIPASSKSALQCV
MEVDEERIKLEKLAEELAMSEEDDAQEQLIDIYERLDDMSADLAEVKAAR
ILHGLGFDKAMQQKQAKDFSGGWRMRIALARALFVKPHLLLLDEPTNHLD
LDACVWLEEELKTYKRILVLISHSQDFLNGVCTNIIHLTGKRLKYYTGNY
EAFVRTRMELLENQMKQYNWEQDQISHMKNYIARFGHGSAKLARQAQSKE
KTLAKMVAQGLTEKVSDDKVLNFYFPSCGKVPPPVIMVQNVNFRYNDETP
WIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNSHL
RIARYHQHLHELLDLDASPLEYMMRAFPDVKEKEEMRKIIGRYGLTGRQQ
VCPIRQLSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAIN
DFDGGMVLVSHDFRLINQVAEEIWVCEKETVTKWKGGILDYKDHLKNKIT
SENEKKAKAGK*

LD02975.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9281-PD 611 CG9281-PD 1..611 1..611 3173 100 Plus
CG9281-PC 611 CG9281-PC 1..611 1..611 3173 100 Plus
CG9281-PB 611 CG9281-PB 1..611 1..611 3173 100 Plus
CG1703-PB 901 CG1703-PB 287..884 2..599 1059 37.1 Plus
CG9330-PA 708 CG9330-PA 91..708 9..603 1055 38.5 Plus