Clone LD02979 Report

Search the DGRC for LD02979

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:29
Well:79
Vector:pBS SK-
Associated Gene/TranscriptRanBP3-RA
Protein status:LD02979.pep: gold
Preliminary Size:1806
Sequenced Size:1740

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10225 2001-01-01 Release 2 assignment
CG10225 2001-11-02 Blastp of sequenced clone
CG10225 2003-01-01 Sim4 clustering to Release 3
CG10225 2008-04-29 Release 5.5 accounting
CG10225 2008-08-15 Release 5.9 accounting
CG10225 2008-12-18 5.12 accounting

Clone Sequence Records

LD02979.complete Sequence

1740 bp (1740 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069314

> LD02979.complete
CAGAACGCTCTATTCTGTAAAAGATTTGGCAATTTATATTTTAAAATTGC
AAGTAGACTAGTTTGCAATGTCTGAAAATAATGAAGCGTCAGTCGAAACT
AACTGTTTCCGAGGTGGCTTCACCTTGAAGGCTTCTCGCCTGGGCGGTGC
TGTCCTGCGCCCAGCAGTCTTGGCAAACAGCAGCGGCTCCAACAATAGTT
CCACATCCCCAAGTGCAGGTGAAGACAGCGCCCTGCTGAATAATCCGTTT
CTGCGCGAGTCCAAGGACGACGACGATGACGAGGAGGTGGTGGCCACCGG
ATCTGCGGCAGCCGAGTCCACTGGCGACAAGGAGGACGACGATGTCGACG
AGCGGCCGGATCCGCTGACCAAGCTGCGTAGCAATGGCATTGAGCGCTCC
AGCATGTTTGCAGCAGCCAAGAACAACATGCCAAATGTTCAGTCCAGCGG
GTTCGTCTTCGGCCAGAATGTGCATGAACGTGTGGTGGCCCCCAATGCTG
AACAGGTCACCGCTGAGCCGGATGCAGATACGGCAGCCAGCTCGGTATCA
GCCCAGGAGGCTGCCTCCTCCTCCACCGCTGCTACGTCGTCCTCGGCGCC
ATTGCTCTTCTCAAGCGTCATTCAGAACGCTGCCCAGACCACAGAGACCA
GCGAGGCCGCTGCCTCCTCATCCATTTGCAGCAGCAGCAGCAACAACAAG
GAGTCCGCCGAGGCCAAGAGCCTGACGGATGTGGCCCGGGAGTATGAGGA
GAGCCGCGCTCAGAAACGCAAATACGAGGAGGTCGAGACCTTCACCGGCG
AGGAGGACGAGATCAACATTATCGACGTGAGCTGCAAGCTATTCGCCTTT
CTTAACAGCAACTGGGAGGAGCGTGGTCGCGGCAGTCTGCGCTTAAACGA
CGCCAAGGACTTAAGGGGCGACTCGCGCGTGGTGTTCCGCACTTCTGGCA
ATCTGCGCCTGCTTCTCAACACCAAAGTCTGGGCCGCCATGGTGGCGGAG
CGAGCCAGCCAAAAGTCCCTACGACTAACGGCCATCGACAACTCTGGCGT
TGTCAAGATCTTCCTGGCCATGGGCCGACCGGCGGACATTGCCCAGCTAC
ACAAGGCGCTCAGCGAACGGATTGCCAAGCGCAAGGTCTCACATCCCGAG
GAGTGTTCCGTAGAGGAAGCGAAAAACGGCGTCGCCTCTGAGGCAGCGGC
TAGCTTGCAACCGGAGTCGACGACTCACGACGACGAGGATGAGGATGCTG
CTCCCGGACCGTCTGGTGCCATTTCAGCAGAGGCAGACAGCTACGGCCCG
AGTCCCAAGAAGGTGATCGTCCAGCCCGATAGCAGCGCCGATGTCCCTGT
GCCGCCCGTTGAGGAGGGCGACGAGGATGCTGAGGCCGAGGCCAAGGAGT
CAACCGATCAGAATTAACCGCCGCTCGCTCTTGTTCTTTTTATACGATTC
ATACATGGAGAAATAAAACACTCACAACAAACACTAATTAATAAAGCGCG
CCGTGAATTATTATAAATTAATTATAATAATTTATTAATAATTATTATTA
TTAAAAATAAAATAAATGAAGTGCTGATTTGTAAACCCGTGAGCAGCGTC
GACAAAAGACATTTATCCATTACGCTTTGTGTTTATAATTTTTTGTTAAA
AATGAAAACCGAAATTAAGATATCGATATCGATCGTACACGCTCTAATTA
AAAGTTTTAATTTAATCACTATAAAAAAAAAAAAAAAAAA

LD02979.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10225-RA 1772 CG10225-RA 51..1772 1..1722 8610 100 Plus
CG10225.a 1769 CG10225.a 51..1769 1..1722 8540 99.8 Plus
Hmgcr-RB 3833 Hmgcr-RB 3619..3833 1727..1513 1060 99.5 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19574351..19575990 1722..83 8185 99.9 Minus
chr3R 27901430 chr3R 19576118..19576200 83..1 415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23750932..23752576 1727..83 8210 99.9 Minus
3R 32079331 3R 23752704..23752786 83..1 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23491763..23493407 1727..83 8210 99.9 Minus
3R 31820162 3R 23493535..23493617 83..1 415 100 Minus
Blast to na_te.dros performed 2019-03-15 17:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 3146..3218 11..87 122 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2286..2399 589..699 121 58.8 Plus

LD02979.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:26:29 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19574351..19574505 1568..1722 100 == Minus
chr3R 19574568..19575989 84..1505 99 <- Minus
chr3R 19576118..19576200 1..83 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:37 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 1..1350 68..1417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:30 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 1..1350 68..1417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:36:12 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 1..1350 68..1417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:03:59 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 1..1350 68..1417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:39 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 1..1350 68..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:29 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 45..1766 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:30 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 45..1766 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:36:12 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 49..1770 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:00 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
CG10225-RA 45..1766 1..1722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:39 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
RanBP3-RA 49..1770 1..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:29 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23750937..23752575 84..1722 100 <- Minus
3R 23752704..23752786 1..83 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:29 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23750937..23752575 84..1722 100 <- Minus
3R 23752704..23752786 1..83 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:29 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23750937..23752575 84..1722 100 <- Minus
3R 23752704..23752786 1..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:12 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19576659..19578297 84..1722 100 <- Minus
arm_3R 19578426..19578508 1..83 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:13 Download gff for LD02979.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23491768..23493406 84..1722 100 <- Minus
3R 23493535..23493617 1..83 100   Minus

LD02979.pep Sequence

Translation from 67 to 1416

> LD02979.pep
MSENNEASVETNCFRGGFTLKASRLGGAVLRPAVLANSSGSNNSSTSPSA
GEDSALLNNPFLRESKDDDDDEEVVATGSAAAESTGDKEDDDVDERPDPL
TKLRSNGIERSSMFAAAKNNMPNVQSSGFVFGQNVHERVVAPNAEQVTAE
PDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAAAS
SSICSSSSNNKESAEAKSLTDVAREYEESRAQKRKYEEVETFTGEEDEIN
IIDVSCKLFAFLNSNWEERGRGSLRLNDAKDLRGDSRVVFRTSGNLRLLL
NTKVWAAMVAERASQKSLRLTAIDNSGVVKIFLAMGRPADIAQLHKALSE
RIAKRKVSHPEECSVEEAKNGVASEAAASLQPESTTHDDEDEDAAPGPSG
AISAEADSYGPSPKKVIVQPDSSADVPVPPVEEGDEDAEAEAKESTDQN*

LD02979.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18744-PA 457 GF18744-PA 1..457 1..449 1514 74 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12410-PA 449 GG12410-PA 1..449 1..449 2261 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11730-PA 449 GH11730-PA 1..442 1..444 1345 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-PA 449 CG10225-PA 1..449 1..449 2231 100 Plus
RanBP3-PB 448 CG10225-PB 1..448 1..449 2214 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22401-PA 440 GI22401-PA 1..431 1..443 1342 62.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24276-PA 489 GL24276-PA 1..460 1..432 1363 65.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10170-PA 487 GA10170-PA 1..460 1..432 1363 65.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23544-PA 449 GM23544-PA 1..449 1..449 2262 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18358-PA 449 GD18358-PA 1..449 1..449 2273 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24650-PA 441 GJ24650-PA 1..427 1..440 1319 62.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10849-PA 459 GK10849-PA 1..443 1..435 1376 67.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23929-PA 451 GE23929-PA 1..451 1..449 2243 96.5 Plus

LD02979.hyp Sequence

Translation from 67 to 1416

> LD02979.hyp
MSENNEASVETNCFRGGFTLKASRLGGAVLRPAVLANSSGSNNSSTSPSA
GEDSALLNNPFLRESKDDDDDEEVVATGSAAAESTGDKEDDDVDERPDPL
TKLRSNGIERSSMFAAAKNNMPNVQSSGFVFGQNVHERVVAPNAEQVTAE
PDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAAAS
SSICSSSSNNKESAEAKSLTDVAREYEESRAQKRKYEEVETFTGEEDEIN
IIDVSCKLFAFLNSNWEERGRGSLRLNDAKDLRGDSRVVFRTSGNLRLLL
NTKVWAAMVAERASQKSLRLTAIDNSGVVKIFLAMGRPADIAQLHKALSE
RIAKRKVSHPEECSVEEAKNGVASEAAASLQPESTTHDDEDEDAAPGPSG
AISAEADSYGPSPKKVIVQPDSSADVPVPPVEEGDEDAEAEAKESTDQN*

LD02979.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
RanBP3-PA 449 CG10225-PA 1..449 1..449 2231 100 Plus
RanBP3-PB 448 CG10225-PB 1..448 1..449 2214 99.8 Plus