Clone LD03007 Report

Search the DGRC for LD03007

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:30
Well:7
Vector:pBS SK-
Associated Gene/TranscriptCG4615-RA
Protein status:LD03007.pep: gold
Preliminary Size:2033
Sequenced Size:1964

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4615 2001-01-01 Release 2 assignment
CG4615 2002-06-10 Blastp of sequenced clone
CG4615 2008-04-29 Release 5.5 accounting
CG4615 2008-08-15 Release 5.9 accounting
CG4615 2008-12-18 5.12 accounting

Clone Sequence Records

LD03007.complete Sequence

1964 bp (1964 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121639

> LD03007.complete
ACGGACGCCAAATCGAATCTTCCCACATCCCCGGATGCAGTGCAGCAAGC
TCTGGGTCCCTGAGAATCCTGCGTGGGCCTGGGATTCCGAATCCTCTTCC
GCCCCGGATCCGCACGTCAGCGCGGCATCCGCATCCGCCACCGCTTCCGC
CCACGCACAGCATCCGCAGCCACATCCGCGGCAGCAAAAAAACGTCTATC
CACGATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTGGAATCCGTACAC
TGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTCAGTCTGATGCAG
GATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTTCAGCAAGTTCTG
GAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGCAGTTGCGCAATG
TCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCCTACCAGCCAACG
GAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCATTTGGATACTGCC
CGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCTCCAGCGCCAGCC
AGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGCATGCTCTTCACG
GTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGAGCACAAACCACC
GAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGACGTATCAGGGGC
TCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATCTATGTGTTCATC
GCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACACCGATCATTCGGC
CATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGGCGGGCATAGGAA
TTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGTCTGGAGACGTTC
TTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGTTGTGTTCACTGG
CCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCGGCGGCTTCTACA
TTCTGGGCATTGTATTCTTCAAGGCGGACGGCACGATACCCATGGCCCAT
GCCATTTGGCATCTGTTTGTGGTGCTGGCCGCCGGATGTCACTATTACGC
CATCCTGGTGAATCTATATCCAAGCGAGGGAGCCGCAGCACCGTGAACAA
ACGAGCGCCACAAAGCAGTTGTGGTAACATGCAGCGAATTTAGAACTTAG
AGTACTTAACGACAGGGATTCGATGTTGTCAGCCATGTGTAACGTATTCC
TATGATATACCCGATGTACCCGAGTCTCTGCTCCACAATTAGCCAAATTT
TAAGCGAGCGAGGACGCCTAGCTTGTAGTCTAGTTGTAGCATTACGAACT
AACTAAATCGAAACGATTCTTGTGATCAGTATGTGCGGTCTTGCCAAAGA
TTCAAATTGTGCGAGTGCTCATCTCTCCCTCTCCCTCTCAACTTTAACTT
GATATTATTAGCGATATTCATATATTTAGTATCCATAACGACCCGTTTTG
GCCATGTGTTTCTCAAAAGACTTTGAACCGTACTCAAAAGGCAAAGGACA
CGAATATTAAACTTGTACAAATATCCGAGAGTTAACGACCTGAACCTTTT
GAACACTAGAAGCCCGCCTATCCCGCATTGCATTATGCATGTTTATACAG
ATTATACAGATATATTATATACCCATATATACCCATATACACAAGTAGAT
AGAATTAAGAGGCCATCCGATCCGCGAGTCCAGCCCCTTCGGCCAGTTTC
ATCGCCGAGCTCAGGGACAAATCGATGTGTTCGCAGATACTGAAGAAGGT
GACTATTTACAAATACGCTTGATATCTTGATATTTTCGGGGCCTGGCTCG
CGATCGGCGGATATAGCTTTCGTGTACTACTCGTATTTATGGTGCAGATC
GATTAGTTTTAATGGCTCTAATAAATTGTATATTTCCAAATGAAAAAAAA
AAAAAAAAAAAAAA

LD03007.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 2126 CG4615-RA 48..1992 1..1945 9725 100 Plus
CG4615.a 2138 CG4615.a 247..1998 194..1945 8760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6990552..6991632 1942..862 5405 100 Minus
chrX 22417052 chrX 6992259..6992518 453..194 1300 100 Minus
chrX 22417052 chrX 6991699..6991920 866..645 1095 99.5 Minus
chrX 22417052 chrX 6994057..6994250 194..1 970 100 Minus
chrX 22417052 chrX 6991983..6992175 644..452 950 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7098575..7099658 1945..862 5420 100 Minus
X 23542271 X 7100274..7100533 453..194 1300 100 Minus
X 23542271 X 7099725..7099946 866..645 1110 100 Minus
X 23542271 X 7102076..7102269 194..1 970 100 Minus
X 23542271 X 7100009..7100201 644..452 965 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7106673..7107756 1945..862 5420 100 Minus
X 23527363 X 7108372..7108631 453..194 1300 100 Minus
X 23527363 X 7107823..7108044 866..645 1110 100 Minus
X 23527363 X 7110174..7110367 194..1 970 100 Minus
X 23527363 X 7108107..7108299 644..452 965 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:42:23 has no hits.

LD03007.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:43:23 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6990552..6991629 865..1942 100 <- Minus
chrX 6991701..6991920 645..864 99 <- Minus
chrX 6991983..6992173 454..644 99 <- Minus
chrX 6992259..6992517 195..453 100 <- Minus
chrX 6994057..6994250 1..194 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:43 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 205..1146 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:18 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 205..1146 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:14 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 205..1146 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:07:33 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 205..1146 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:38 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 205..1146 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:40:11 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 29..1970 1..1942 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:18 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 29..1970 1..1942 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:14 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 32..1973 1..1942 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:07:34 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 29..1970 1..1942 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:38 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 32..1973 1..1942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:23 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
X 7100009..7100199 454..644 100 <- Minus
X 7100274..7100532 195..453 100 <- Minus
X 7102076..7102269 1..194 100   Minus
X 7098578..7099655 865..1942 100 <- Minus
X 7099727..7099946 645..864 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:23 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
X 7100009..7100199 454..644 100 <- Minus
X 7100274..7100532 195..453 100 <- Minus
X 7102076..7102269 1..194 100   Minus
X 7098578..7099655 865..1942 100 <- Minus
X 7099727..7099946 645..864 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:23 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
X 7100009..7100199 454..644 100 <- Minus
X 7100274..7100532 195..453 100 <- Minus
X 7102076..7102269 1..194 100   Minus
X 7098578..7099655 865..1942 100 <- Minus
X 7099727..7099946 645..864 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:14 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6992611..6993688 865..1942 100 <- Minus
arm_X 6993760..6993979 645..864 100 <- Minus
arm_X 6994042..6994232 454..644 100 <- Minus
arm_X 6994307..6994565 195..453 100 <- Minus
arm_X 6996109..6996302 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:18 Download gff for LD03007.complete
Subject Subject Range Query Range Percent Splice Strand
X 7106676..7107753 865..1942 100 <- Minus
X 7107825..7108044 645..864 100 <- Minus
X 7108107..7108297 454..644 100 <- Minus
X 7108372..7108630 195..453 100 <- Minus
X 7110174..7110367 1..194 100   Minus

LD03007.hyp Sequence

Translation from 204 to 1145

> LD03007.hyp
MSNSEGSGHESGIRTLNRNANGNGNGDLSLMQDLQHKYAFLENLFSKFWK
SIIKSNSNLKLQLRNVKWKNAKAKPGCAYQPTEIEQVANVITHGIWILPA
VFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYCAEHKPPK
NVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLENTDHSAI
LFCMEWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGH
HFHGMMQLKFGGGFYILGIVFFKADGTIPMAHAIWHLFVVLAAGCHYYAI
LVNLYPSEGAAAP*

LD03007.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 313 CG4615-PA 1..313 1..313 1710 100 Plus

LD03007.pep Sequence

Translation from 204 to 1145

> LD03007.pep
MSNSEGSGHESGIRTLNRNANGNGNGDLSLMQDLQHKYAFLENLFSKFWK
SIIKSNSNLKLQLRNVKWKNAKAKPGCAYQPTEIEQVANVITHGIWILPA
VFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYCAEHKPPK
NVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLENTDHSAI
LFCMEWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGH
HFHGMMQLKFGGGFYILGIVFFKADGTIPMAHAIWHLFVVLAAGCHYYAI
LVNLYPSEGAAAP*

LD03007.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22105-PA 309 GF22105-PA 17..300 25..308 1445 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17636-PA 438 GG17636-PA 124..438 1..313 1527 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12297-PA 289 GH12297-PA 3..283 29..309 1293 82.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 313 CG4615-PA 1..313 1..313 1710 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15804-PA 290 GI15804-PA 3..283 29..309 1335 85.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14200-PA 301 GL14200-PA 15..296 27..308 1402 89.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18303-PA 301 GA18303-PA 15..296 27..308 1402 89.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17479-PA 365 GM17479-PA 45..365 1..313 1629 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16164-PA 313 GD16164-PA 1..313 1..313 1644 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18658-PA 310 GJ18658-PA 5..303 2..309 1334 79 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19878-PA 297 GK19878-PA 5..282 29..306 1323 84.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17542-PA 436 GE17542-PA 120..436 1..313 1516 93.1 Plus