Clone LD03052 Report

Search the DGRC for LD03052

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:30
Well:52
Vector:pBS SK-
Associated Gene/TranscriptCG5445-RA
Protein status:LD03052.pep: gold
Preliminary Size:2038
Sequenced Size:1935

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5445 2001-01-01 Release 2 assignment
CG5445 2001-11-29 Blastp of sequenced clone
CG5445 2003-01-01 Sim4 clustering to Release 3
CG5445 2008-04-29 Release 5.5 accounting
CG5445 2008-08-15 Release 5.9 accounting
CG5445 2008-12-18 5.12 accounting

Clone Sequence Records

LD03052.complete Sequence

1935 bp (1935 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069316

> LD03052.complete
CACACCGCAGGGTCCAGTATTGTTGCCTTTTTATTTTATTCCCGCATTTC
TTCGCTTTGAAGCGATCGCTTTTCGGCTTTCTTTGAGGTCACAGGTCACG
CCAGCGGACGCTGGAAGCCGAAACGCCCCCCGCCTCGCCCCCTTGGCCAT
GGTGACCGTCGCTGTTGTTGTTTTTGTCGCCCTTTAAAACCAGCTGCTGC
ATCTGTGTGTGCGCGCGTGCTTGCGAGTATTTCCAACCAAGCGTGCGTCG
GTGTGCGTGCGTGTACAAGTGCTGAAACAACAACAAAAGCAAAGAAAGGG
GGAGAAAGCAAACAAAGGAGACAAACTGTGAGAGAAAGACAGAGCGAGAT
CAAGACAGTGAGCGAGATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTGATAACCGCGCACACCCAATGAGCGCGGCGTCCAGCATCTAGCA
TTCGGCATCCTCCTCCGCTTTCGAGCGGGGTCTTCGGTCCCAAAACTCAT
CGATAGCATTTTAAAAAAAACCTGCGCGATATGACTAGAATTTCCCTTTT
CCCTCTTTTTTCAAATGAGCATACTGTTGTTCTCAGTAGTTGATTTGTAT
ACAGGAAAAAAAATTTTTTTTATGTAGTAGCCAACGCCATACATATACTA
CACAACCCCATGTTTAACTAGAGTTTGAGTTCGATTGCAGGACCCCCCTT
TCGTTACTCCTCCCACTATTCCCACTCCTTAATTTCGGTGTCAGACAGAT
CAGCTTTATATATATATATCGATATGTCGCGAAGGGAGCGAAGGGTGTGT
GCGGCAATAGGGAGAAATAAATTGAAATAAATTAAGTGAAAGTGAGAATA
GGAATCGTGTGGCCACATTAAGTTCTTCTGTTAGTTTTAGGCGGTACTGT
TGCGTGTGCGTGCGATTGTTTAAATCATAATTGAAATTTTTTTTTTCCAA
TAATTTAAATTCCTATGTTTTGAGTAATCGAGAAGCATGAAAGCTAAGAA
ACGTGTAACAAAATTAGATCTAAGTGTTTTATTGAGAAAAAATAAGAATG
AAGCAGAAGGATTAAGAAAAAAAAAAAAAAAAAAA

LD03052.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RA 1962 CG5445-RA 42..1960 1..1919 9595 100 Plus
CG5445-RD 2003 CG5445-RD 374..2002 291..1919 8145 100 Plus
CG5445.a 1743 CG5445.a 115..1743 291..1919 8145 100 Plus
CG5445-RD 2003 CG5445-RD 32..321 1..290 1450 100 Plus
CG5445.a 1743 CG5445.a 1..114 38..151 570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17194144..17194923 1138..1916 3835 99.7 Plus
chrX 22417052 chrX 17192287..17192839 291..843 2750 99.8 Plus
chrX 22417052 chrX 17193522..17193818 842..1138 1485 100 Plus
chrX 22417052 chrX 17191945..17192234 1..290 1450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17304697..17305478 1138..1919 3910 100 Plus
X 23542271 X 17302839..17303391 291..843 2765 100 Plus
X 23542271 X 17304074..17304370 842..1138 1485 100 Plus
X 23542271 X 17302497..17302786 1..290 1450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17312795..17313576 1138..1919 3910 100 Plus
X 23527363 X 17310937..17311489 291..843 2765 100 Plus
X 23527363 X 17312172..17312468 842..1138 1485 100 Plus
X 23527363 X 17310595..17310884 1..290 1450 100 Plus
Blast to na_te.dros performed 2019-03-15 12:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 464..500 122 81.1 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5785..5830 1770..1815 122 73.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 458..535 114 65.8 Plus

LD03052.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:13:14 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17191945..17192234 1..290 100 -> Plus
chrX 17192287..17192838 291..842 99 -> Plus
chrX 17193523..17193818 843..1138 100 -> Plus
chrX 17194145..17194923 1139..1916 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:45 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 1..912 367..1278 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:03 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 1..912 367..1278 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:39:24 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 1..912 367..1278 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:44 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 1..912 367..1278 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:54:49 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 1..912 367..1278 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:27 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 22..1937 1..1916 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:03 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 22..1937 1..1916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:39:24 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 28..1943 1..1916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:45 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 22..1937 1..1916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:49 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 28..1943 1..1916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:13:14 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
X 17302497..17302786 1..290 100 -> Plus
X 17302839..17303390 291..842 100 -> Plus
X 17304075..17304370 843..1138 100 -> Plus
X 17304698..17305475 1139..1916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:13:14 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
X 17302497..17302786 1..290 100 -> Plus
X 17302839..17303390 291..842 100 -> Plus
X 17304075..17304370 843..1138 100 -> Plus
X 17304698..17305475 1139..1916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:13:14 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
X 17302497..17302786 1..290 100 -> Plus
X 17302839..17303390 291..842 100 -> Plus
X 17304075..17304370 843..1138 100 -> Plus
X 17304698..17305475 1139..1916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:39:24 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17196530..17196819 1..290 100 -> Plus
arm_X 17196872..17197423 291..842 100 -> Plus
arm_X 17198108..17198403 843..1138 100 -> Plus
arm_X 17198731..17199508 1139..1916 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:12 Download gff for LD03052.complete
Subject Subject Range Query Range Percent Splice Strand
X 17312796..17313573 1139..1916 100   Plus
X 17310595..17310884 1..290 100 -> Plus
X 17310937..17311488 291..842 100 -> Plus
X 17312173..17312468 843..1138 100 -> Plus

LD03052.hyp Sequence

Translation from 366 to 1277

> LD03052.hyp
MDVEENYENAAEMQNMNMNLNLNPNPNPNSDSQQQQQQQMQCEPLFGLTT
NTTTTTNPMMAIPLPAPPGPHSAPNNSPNSNANPNSNLSPSPSATTANAS
ASTIKCLPTNDFDIDSLLLQQFSCMGTTDHEDLISQFQSLMNNQMNRESA
RFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQQQAFQLQND
GTERWPNNCYLTSPIQTQRINVPALRPGETCDILADMMPTQPPTMWRLCT
SNGWYFGDAIWMIPPGTQASQDELQQRMVQLITSEVKPDIYPQINIVITA
HTQ*

LD03052.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PG 303 CG5445-PG 1..303 1..303 1626 100 Plus
CG5445-PF 303 CG5445-PF 1..303 1..303 1626 100 Plus
CG5445-PD 303 CG5445-PD 1..303 1..303 1626 100 Plus
CG5445-PA 303 CG5445-PA 1..303 1..303 1626 100 Plus
CG5445-PB 303 CG5445-PB 1..303 1..303 1626 100 Plus

LD03052.pep Sequence

Translation from 366 to 1277

> LD03052.pep
MDVEENYENAAEMQNMNMNLNLNPNPNPNSDSQQQQQQQMQCEPLFGLTT
NTTTTTNPMMAIPLPAPPGPHSAPNNSPNSNANPNSNLSPSPSATTANAS
ASTIKCLPTNDFDIDSLLLQQFSCMGTTDHEDLISQFQSLMNNQMNRESA
RFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQQQAFQLQND
GTERWPNNCYLTSPIQTQRINVPALRPGETCDILADMMPTQPPTMWRLCT
SNGWYFGDAIWMIPPGTQASQDELQQRMVQLITSEVKPDIYPQINIVITA
HTQ*

LD03052.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22334-PA 318 GF22334-PA 1..318 1..303 1180 79.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19113-PA 305 GG19113-PA 1..305 1..303 1238 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24901-PA 337 GH24901-PA 1..337 1..303 1025 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PG 303 CG5445-PG 1..303 1..303 1626 100 Plus
CG5445-PF 303 CG5445-PF 1..303 1..303 1626 100 Plus
CG5445-PD 303 CG5445-PD 1..303 1..303 1626 100 Plus
CG5445-PA 303 CG5445-PA 1..303 1..303 1626 100 Plus
CG5445-PB 303 CG5445-PB 1..303 1..303 1626 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15961-PA 334 GI15961-PA 76..334 40..303 1054 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18886-PA 303 GA18886-PA 1..303 1..303 1088 76 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13505-PA 303 GM13505-PA 1..303 1..303 1569 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15665-PA 304 GD15665-PA 1..304 1..303 1563 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18852-PA 312 GJ18852-PA 52..312 42..303 1049 78.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25381-PA 315 GK25381-PA 1..315 1..303 1017 68.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17660-PA 305 GE17660-PA 1..305 1..303 1230 94.1 Plus