Clone LD03161 Report

Search the DGRC for LD03161

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:31
Well:61
Vector:pBS SK-
Associated Gene/TranscriptCG8078-RA
Protein status:LD03161.pep: gold
Preliminary Size:1587
Sequenced Size:1450

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8078 2002-01-01 Sim4 clustering to Release 2
CG8078 2002-05-10 Blastp of sequenced clone
CG8078 2003-01-01 Sim4 clustering to Release 3
CG8078 2008-04-29 Release 5.5 accounting
CG8078 2008-08-15 Release 5.9 accounting
CG8078 2008-12-18 5.12 accounting
Uhg4 2008-12-18 5.12 accounting

Clone Sequence Records

LD03161.complete Sequence

1450 bp (1450 high quality bases) assembled on 2002-05-10

GenBank Submission: AY102671

> LD03161.complete
ATTAAGTGTCAGTAAAAATGCACATTATCTGCAAGTCGCAGTGCGGAAAT
CGCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTG
CTTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCA
ACTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAG
GACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAA
CTACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGAT
ATCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAG
ATGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGA
CCGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCG
TCTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGAT
AGCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGAT
GAACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCC
GCACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTAC
AGCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTA
CTTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTC
GAGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGAC
ATCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCC
CGAGCGTGGCACATGCACCCGATGTGGCTTCGTTTCCTCACAGCAGCCGT
GCAAGGCGTGCGTCCTTCTCGAGGGTCTAAATAGAGGATTGCCGAAGCTG
GGCATAGGCAAGAAGTCGAAGGGCGAGCGAATGATTGCCAAGCAGAACCA
GGAACTAGCATTGCGGGAGCGAGCAAACTTAGTAAAAAACGATTTTTAAG
AACACATATGAATTTTATTTATTCGTGATTCCACAAGATACAAATTGTGT
TCATCCAAGGTTGCCAACCTGAAAAGATAACAACAGGAACGATAAGTTTG
GTTTCGCAGGCTAATTTCATTAATACTAGAATGCATTATGAAGCTCAGTG
CCAAGTTTTTAACCAGGGCCCATAACCAGTCAAACAAGACGCTCTATCTC
CAAAAGAATATTGAAGAAGATTGCCAGCGCTTGACCTTTATATGGTGTCT
GTGAATGGTTTAAGTGATCATCATTGAAATCTTCATTTCCGCTAAACAGA
ATCTCTTTTCGTACTAACCTTTTTAGATATTGGAATTTATAAATGAACCA
TTGACGGATTCATTTTGCTACGCATGTTTAAAAAAAAAAAAAAAAAAAAA

LD03161.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078.a 2000 CG8078.a 46..1474 1..1429 7145 100 Plus
CG8078-RA 1582 CG8078-RA 74..1502 1..1429 7145 100 Plus
nc_5362.b 470 nc_5362.b 398..470 1120..1048 365 100 Minus
nc_5362.b 470 nc_5362.b 339..402 1429..1366 320 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4984508..4985713 1429..224 6030 100 Minus
chr2R 21145070 chr2R 4985766..4985926 223..63 805 100 Minus
chr2R 21145070 chr2R 4985980..4986044 65..1 310 98.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
snoRNA:Or-CD2-RA 140 CR33636-RA 1..140 1330..1191 700 100 Minus
Uhg4-RA 466 CR42451-RA 394..466 1120..1048 365 100 Minus
Uhg4-RA 466 CR42451-RA 335..398 1429..1366 320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9096931..9098136 1429..224 6030 100 Minus
2R 25286936 2R 9098189..9098349 223..63 805 100 Minus
2R 25286936 2R 9098403..9098467 65..1 325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9098130..9099335 1429..224 6030 100 Minus
2R 25260384 2R 9099388..9099548 223..63 805 100 Minus
2R 25260384 2R 9099602..9099666 65..1 325 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:39:01 has no hits.

LD03161.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:39:38 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4984508..4985713 224..1429 100 <- Minus
chr2R 4985766..4985923 66..223 100 <- Minus
chr2R 4985980..4986044 1..65 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:46 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1032 18..1049 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:47 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1032 18..1049 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:20 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1032 18..1049 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:21 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1032 18..1049 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:05 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1032 18..1049 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:49:34 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
snoRNA:Or-CD2-RA 1..140 1191..1330 100   Minus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:02 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1429 1..1429 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:47 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1429 1..1429 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:20 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 59..1487 1..1429 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:21 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 1..1429 1..1429 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:05 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 59..1487 1..1429 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:39:38 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9098189..9098346 66..223 100 <- Minus
2R 9098403..9098467 1..65 100   Minus
2R 9096931..9098136 224..1429 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:39:38 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9098189..9098346 66..223 100 <- Minus
2R 9098403..9098467 1..65 100   Minus
2R 9096931..9098136 224..1429 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:39:38 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9098189..9098346 66..223 100 <- Minus
2R 9098403..9098467 1..65 100   Minus
2R 9096931..9098136 224..1429 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:20 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4984436..4985641 224..1429 100 <- Minus
arm_2R 4985694..4985851 66..223 100 <- Minus
arm_2R 4985908..4985972 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:48 Download gff for LD03161.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9098130..9099335 224..1429 100 <- Minus
2R 9099388..9099545 66..223 100 <- Minus
2R 9099602..9099666 1..65 100   Minus

LD03161.hyp Sequence

Translation from 17 to 1048

> LD03161.hyp
MHIICKSQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRG
EKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSL
ETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQA
LDRGAKLLGVDSIATGHNADDIAETVLMNVLRGDTARLRRCTSIRTGGGE
DTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD
LEKVRPSVIMDIIYSGEQLRFKDTVKKPERGTCTRCGFVSSQQPCKACVL
LEGLNRGLPKLGIGKKSKGERMIAKQNQELALRERANLVKNDF*

LD03161.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 343 CG8078-PA 1..343 1..343 1787 100 Plus

LD03161.pep Sequence

Translation from 17 to 1048

> LD03161.pep
MHIICKSQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRG
EKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSL
ETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQA
LDRGAKLLGVDSIATGHNADDIAETVLMNVLRGDTARLRRCTSIRTGGGE
DTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD
LEKVRPSVIMDIIYSGEQLRFKDTVKKPERGTCTRCGFVSSQQPCKACVL
LEGLNRGLPKLGIGKKSKGERMIAKQNQELALRERANLVKNDF*

LD03161.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12710-PA 343 GF12710-PA 1..343 1..343 1775 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10584-PA 343 GG10584-PA 1..343 1..343 1808 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20281-PA 343 GH20281-PA 1..343 1..343 1737 93.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 343 CG8078-PA 1..343 1..343 1787 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19452-PA 343 GI19452-PA 1..343 1..343 1757 95 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16852-PA 343 GL16852-PA 1..343 1..343 1722 93.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20807-PA 343 GA20807-PA 1..343 1..343 1725 93.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20632-PA 343 GM20632-PA 1..343 1..343 1815 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10105-PA 329 GD10105-PA 1..329 1..343 1700 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21203-PA 343 GJ21203-PA 1..343 1..343 1734 94.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22963-PA 343 GK22963-PA 1..343 1..343 1717 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22576-PA 343 GE22576-PA 1..343 1..343 1792 98 Plus