Clone LD03179 Report

Search the DGRC for LD03179

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:31
Well:79
Vector:pBS SK-
Associated Gene/TranscriptCG5986-RA
Protein status:LD03179.pep: gold
Preliminary Size:1506
Sequenced Size:1339

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5986 2001-01-01 Release 2 assignment
CG5986 2001-11-09 Blastp of sequenced clone
CG5986 2003-01-01 Sim4 clustering to Release 3
CG5986 2008-04-29 Release 5.5 accounting
CG5986 2008-08-15 Release 5.9 accounting
CG5986 2008-12-18 5.12 accounting

Clone Sequence Records

LD03179.complete Sequence

1339 bp (1339 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069317

> LD03179.complete
CTGTGACGTGGCTGCGTTTGTAAATTTACCGCATTTTACTTGCTCTGCAC
TCTGTTCGCACACTTCATTTGACGGTCAAGTTTAGCCGCTACCGGTTTGT
ATTAATTTTGCGAAACTTTCAAAGTTGTTAGGGGCTGCAAATGTACGTTG
AACGCGTCGCTAAAATTTTACCTTCGTCGTCTAAAATGCGAACTAATTAA
TGAGATTTTGTGTGCGAGAGCCAGGGCTGCCAACTTGCTGAGAAATAAAA
ACGCAATGGCGGCAAGATGGGAAATGCAATAAAGAGTATGGACTTGACAA
GATTTTTTTATAAAATTACTTACGTAGGGGTATTTAATGGAAATTCAGCG
ATAATATGACAAGGATCACACATTAATTCGCGACTTTAAGTTATTTGAAG
CAACGTTATCGAAAAGGGGGCAACCCTAGGGCAGGCGATAACGCTTGCAT
CACCGCTTTCTCTCTCTAACACACTCACCGCGGGCGCAAATGCAGCACAA
AGCAGACTAGAAATAACAATCGTTATCGAAAAGGTCGTCGAAATGGGCAT
AAATATTTTTATAAACAGTAAATATATAATTTCTTGTGGAGATCACGTTA
AATGTGATGAGCTTTACAGTCGGATTGCGGAGAAAACAAACCTGCAACCA
GGGGAATACTACTTAGTCAGCAATGGCAAGCGCTTGGAGGGAGAAATTTC
ATCTGGAGATGTTCACTGCGTTCTCCGCCAGCTCGGTGGCAAAGGAGGAT
TTGGTTCCATGCTTCGAGCCATTGGTGCGCAAATTGAAAAGACAACCAAT
CGCGAGGCTTGCCGCGATCTAAGTGGTCGCCGTTTGCGGGATATCAACGA
GGAGAAGCGGGTGCGCGCCTGGCTGGAGAAGCAGGGCGAACGGGAACGGG
AGGCCGAGGAGCGTAAAAAGCGAAAAATCGAGAAACTGCTGGCCGTGCCC
AAGCACGACTTTAAGGACGATAAGTACGAGGAAGCCAGGGCTAATCTGAC
CGAGAAGGTAAACGACGCCTTCGAGGAGGGACTCAAGCAGGCCGAGGAGA
ACAAGGAGAAAGGCGTCGAGGAAGCAACTTCCAGTGGCACAAAGAGGAAA
TCCCCCGCCGTAGACAAGACCAAGGCAAAAAAGAAGAAAAAGGGCACACT
CTGGATAGACGATGACATCTCTGGATCCGACTCTGACTCTGACGACAGCG
AGGAGGAGCCAAAAACACAGAAAAAAGCTATACAAAACTAGATAAATAAC
TTTTGAATTAAGTATGTACCAAAGACGTTCTTATTTCAAAATTTACCTGA
AATAAACATAACAATATAAATAAAAAAAAAAAAAAAAAA

LD03179.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-RA 1366 CG5986-RA 31..1352 1..1322 6610 100 Plus
Rox8.c 3390 Rox8.c 1..260 289..30 1300 100 Minus
Rox8.k 3388 Rox8.k 70..267 237..40 990 100 Minus
Rox8.k 3388 Rox8.k 1..69 392..324 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19871895..19872580 639..1321 3245 98.5 Plus
chr3R 27901430 chr3R 19871199..19871836 1..638 3145 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24048486..24049169 639..1322 3420 100 Plus
3R 32079331 3R 24047790..24048427 1..638 3190 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23789317..23790000 639..1322 3420 100 Plus
3R 31820162 3R 23788621..23789258 1..638 3190 100 Plus
Blast to na_te.dros performed 2019-03-15 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1561..1676 1211..1321 136 61.5 Plus

LD03179.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:48:44 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19871199..19871836 1..638 99 -> Plus
chr3R 19871895..19872580 639..1321 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:51 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..699 543..1241 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:05 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..699 543..1241 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:42:20 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..699 543..1241 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:45 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..699 543..1241 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:08:50 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..699 543..1241 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:22 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..1321 1..1321 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:05 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..1321 1..1321 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:42:20 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..1321 1..1321 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:45 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..1321 1..1321 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:08:50 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..1321 1..1321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:44 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24047790..24048427 1..638 100 -> Plus
3R 24048486..24049168 639..1321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:44 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24047790..24048427 1..638 100 -> Plus
3R 24048486..24049168 639..1321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:44 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24047790..24048427 1..638 100 -> Plus
3R 24048486..24049168 639..1321 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:42:20 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19873512..19874149 1..638 100 -> Plus
arm_3R 19874208..19874890 639..1321 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:10 Download gff for LD03179.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23788621..23789258 1..638 100 -> Plus
3R 23789317..23789999 639..1321 100   Plus

LD03179.pep Sequence

Translation from 542 to 1240

> LD03179.pep
MGINIFINSKYIISCGDHVKCDELYSRIAEKTNLQPGEYYLVSNGKRLEG
EISSGDVHCVLRQLGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRD
INEEKRVRAWLEKQGEREREAEERKKRKIEKLLAVPKHDFKDDKYEEARA
NLTEKVNDAFEEGLKQAEENKEKGVEEATSSGTKRKSPAVDKTKAKKKKK
GTLWIDDDISGSDSDSDDSEEEPKTQKKAIQN*

LD03179.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17035-PA 232 GF17035-PA 1..232 1..232 742 77.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11248-PA 230 GG11248-PA 1..230 1..232 891 89.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18485-PA 243 GH18485-PA 1..219 1..209 645 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-PB 232 CG5986-PB 1..232 1..232 1196 100 Plus
CG5986-PA 232 CG5986-PA 1..232 1..232 1196 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24631-PA 249 GI24631-PA 1..248 1..231 612 67.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23395-PA 245 GL23395-PA 1..240 1..228 569 60.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19277-PA 245 GA19277-PA 1..240 1..228 594 64.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26552-PA 233 GM26552-PA 1..233 1..232 930 91 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21057-PA 189 GD21057-PA 1..184 1..184 841 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14192-PA 249 GJ14192-PA 1..245 1..227 699 65.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11149-PA 233 GK11149-PA 1..208 1..205 582 65.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23440-PA 232 GE23440-PA 1..232 1..232 918 92.2 Plus

LD03179.hyp Sequence

Translation from 542 to 1240

> LD03179.hyp
MGINIFINSKYIISCGDHVKCDELYSRIAEKTNLQPGEYYLVSNGKRLEG
EISSGDVHCVLRQLGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRD
INEEKRVRAWLEKQGEREREAEERKKRKIEKLLAVPKHDFKDDKYEEARA
NLTEKVNDAFEEGLKQAEENKEKGVEEATSSGTKRKSPAVDKTKAKKKKK
GTLWIDDDISGSDSDSDDSEEEPKTQKKAIQN*

LD03179.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-PB 232 CG5986-PB 1..232 1..232 1196 100 Plus
CG5986-PA 232 CG5986-PA 1..232 1..232 1196 100 Plus