Clone LD03212 Report

Search the DGRC for LD03212

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:32
Well:12
Vector:pBS SK-
Associated Gene/TranscriptCG11474-RA
Protein status:LD03212.pep: gold
Preliminary Size:1715
Sequenced Size:1539

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11474 2001-01-01 Release 2 assignment
CG11474 2002-06-06 Blastp of sequenced clone
CG11474 2008-04-29 Release 5.5 accounting
CG11474 2008-08-15 Release 5.9 accounting
CG11474 2008-12-18 5.12 accounting

Clone Sequence Records

LD03212.complete Sequence

1539 bp (1539 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119572

> LD03212.complete
CCACTTTATCAATTTATAAACTTTCCGCAGCAGTACAATTCGGCTGGAGC
AACAAACAGATCCTCGAAATGGGCAGCGAAACGGATTTTGACGCAAAGAA
TGGAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCT
ATAAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACC
TTGGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGC
CACATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGG
TTAGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTT
GGTGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACT
GCCCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGT
GTTATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTG
GCCGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAG
CGTGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAA
ACTCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGA
TGCGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGC
CTTTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCG
CGGAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGAC
ATCATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGC
TGAGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCCCA
AGGCCATTCCTTGGTTCATTTCGGACGTGATGGAGCACGACTTCCACTGG
GCACTTCAATTTCTGGCCGACCATCCGGATCCTGTGCTGAGTGAGGTCGG
AAAAAAATGGCAGCGTTTGACGACCGAGGGCAAGTTCGAGCTTTCGCCAC
TGGAACACTTTTGGACGAGTCCCTACGAGTTCTATCGCATGCCAGAGGTA
AATCCCTCACTCTACGACCGCCTGAAGGAGGCGCAACTGGTTATCTTCAA
GGGTGACCTCAACTATCGCAAGTTGTTAGGCGACTTCTCCTGGGACAGCA
CGGAGTCCTTCGAAACTTGCTTGAGGGGCTTTCGTCCTTCCAATCTCTGC
ACTCTGCGCACAATTAAAGCGGATCTGATCTGCGGATTGGGTGCAGGCGT
GGCGGACCAACTGTTTGCCAAGGATAAGGAGTGGATGTTGACTGGCGAGT
ATGGCGTAATACAGTTTGCCAGCAAGTAGAGAAAGAAGGAAATCAGGACA
AGGAACAGCAAACTAGTTGAATTGTTTTAGTCGTTATAAGCTTAGCTTAA
TTGTTGAAATTCAGAGTGACCTATGCGAGATCCAAAACGAAATTATACTC
AATTTAATCATTAACACTTCAAAAAAAAAAAAAAAAAAA

LD03212.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RA 1762 CG11474-RA 76..1597 1..1522 7610 100 Plus
CG11474-RB 1594 CG11474-RB 76..1594 1..1522 7480 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17958146..17959014 1228..360 4195 98.8 Minus
chr2R 21145070 chr2R 17957796..17958089 1520..1227 1425 99 Minus
chr2R 21145070 chr2R 17959592..17959749 158..1 745 98.1 Minus
chr2R 21145070 chr2R 17959342..17959448 264..158 520 99.1 Minus
chr2R 21145070 chr2R 17959179..17959276 360..263 475 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22071765..22072633 1228..360 4345 100 Minus
2R 25286936 2R 22071413..22071708 1522..1227 1480 100 Minus
2R 25286936 2R 22073211..22073368 158..1 790 100 Minus
2R 25286936 2R 22072961..22073067 264..158 535 100 Minus
2R 25286936 2R 22072798..22072895 360..263 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22072964..22073832 1228..360 4345 100 Minus
2R 25260384 2R 22072612..22072907 1522..1227 1480 100 Minus
2R 25260384 2R 22074410..22074567 158..1 790 100 Minus
2R 25260384 2R 22074160..22074266 264..158 535 100 Minus
2R 25260384 2R 22073997..22074094 360..263 490 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:41:37 has no hits.

LD03212.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:42:47 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17957796..17958088 1228..1520 98 <- Minus
chr2R 17958147..17959013 361..1227 98 <- Minus
chr2R 17959179..17959275 264..360 98 <- Minus
chr2R 17959343..17959448 158..263 99 <- Minus
chr2R 17959593..17959749 1..157 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:31:57 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1311 69..1379 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:12 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RC 1..1311 69..1379 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:44 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1311 69..1379 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:16 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1311 69..1379 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:23 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1311 69..1379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:11 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 76..1595 1..1520 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:12 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RC 76..1595 1..1520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:44 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1520 1..1520 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:16 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 76..1595 1..1520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:23 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1520 1..1520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:47 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22073212..22073368 1..157 100   Minus
2R 22071415..22071707 1228..1520 100 <- Minus
2R 22071766..22072632 361..1227 100 <- Minus
2R 22072798..22072894 264..360 100 <- Minus
2R 22072962..22073067 158..263 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:47 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22073212..22073368 1..157 100   Minus
2R 22071415..22071707 1228..1520 100 <- Minus
2R 22071766..22072632 361..1227 100 <- Minus
2R 22072798..22072894 264..360 100 <- Minus
2R 22072962..22073067 158..263 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:47 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22073212..22073368 1..157 100   Minus
2R 22071415..22071707 1228..1520 100 <- Minus
2R 22071766..22072632 361..1227 100 <- Minus
2R 22072798..22072894 264..360 100 <- Minus
2R 22072962..22073067 158..263 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:44 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17958920..17959212 1228..1520 100 <- Minus
arm_2R 17959271..17960137 361..1227 100 <- Minus
arm_2R 17960303..17960399 264..360 100 <- Minus
arm_2R 17960467..17960572 158..263 100 <- Minus
arm_2R 17960717..17960873 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:07 Download gff for LD03212.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22072614..22072906 1228..1520 100 <- Minus
2R 22072965..22073831 361..1227 100 <- Minus
2R 22073997..22074093 264..360 100 <- Minus
2R 22074161..22074266 158..263 100 <- Minus
2R 22074411..22074567 1..157 100   Minus

LD03212.hyp Sequence

Translation from 2 to 1378

> LD03212.hyp
TLSIYKLSAAVQFGWSNKQILEMGSETDFDAKNGIVDGPTPPHTELAALY
KQSFAYYTFRVRLPSTLATIADSLVKDKDVLLATYGAAAEADIEQTTKEV
RQLRDDILSNGPLLPFGENDSDSEVWNAFLEKLPKEKRTYFSVCWLYAEC
YMYRKISSIFRATAHLAAYDYFSQQKQTATKLSVDAMLAVAKATRHNERN
SDTFRQLIKLNLWGNRCDLSITSGKQVKPTGNAFDQVTDLEEKLLIDGTA
EVWKALDGASGEGIVDIIFDNAGYELYTDLILAEYIIDKGLAAKVRFNPK
AIPWFISDVMEHDFHWALQFLADHPDPVLSEVGKKWQRLTTEGKFELSPL
EHFWTSPYEFYRMPEVNPSLYDRLKEAQLVIFKGDLNYRKLLGDFSWDST
ESFETCLRGFRPSNLCTLRTIKADLICGLGAGVADQLFAKDKEWMLTGEY
GVIQFASK*

LD03212.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PC 436 CG11474-PC 1..436 23..458 2297 100 Plus
CG11474-PA 436 CG11474-PA 1..436 23..458 2297 100 Plus
CG4161-PB 484 CG4161-PB 7..444 25..455 997 43.2 Plus
CG4161-PA 484 CG4161-PA 7..444 25..455 997 43.2 Plus
CG2921-PA 478 CG2921-PA 34..469 27..455 989 42 Plus

LD03212.pep Sequence

Translation from 68 to 1378

> LD03212.pep
MGSETDFDAKNGIVDGPTPPHTELAALYKQSFAYYTFRVRLPSTLATIAD
SLVKDKDVLLATYGAAAEADIEQTTKEVRQLRDDILSNGPLLPFGENDSD
SEVWNAFLEKLPKEKRTYFSVCWLYAECYMYRKISSIFRATAHLAAYDYF
SQQKQTATKLSVDAMLAVAKATRHNERNSDTFRQLIKLNLWGNRCDLSIT
SGKQVKPTGNAFDQVTDLEEKLLIDGTAEVWKALDGASGEGIVDIIFDNA
GYELYTDLILAEYIIDKGLAAKVRFNPKAIPWFISDVMEHDFHWALQFLA
DHPDPVLSEVGKKWQRLTTEGKFELSPLEHFWTSPYEFYRMPEVNPSLYD
RLKEAQLVIFKGDLNYRKLLGDFSWDSTESFETCLRGFRPSNLCTLRTIK
ADLICGLGAGVADQLFAKDKEWMLTGEYGVIQFASK*

LD03212.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11598-PA 436 GF11598-PA 1..436 1..436 2073 87.8 Plus
Dana\GF11597-PA 484 GF11597-PA 41..476 6..434 986 40.8 Plus
Dana\GF15383-PA 486 GF15383-PA 10..445 5..434 942 39 Plus
Dana\GF11599-PA 460 GF11599-PA 21..451 4..436 888 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20723-PA 436 GG20723-PA 1..436 1..436 2232 95 Plus
Dere\GG25159-PA 484 GG25159-PA 9..445 5..434 1013 43.9 Plus
Dere\GG20722-PA 478 GG20722-PA 34..470 5..434 1007 41.4 Plus
Dere\GG20724-PA 463 GG20724-PA 25..454 4..436 860 40.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21343-PA 436 GH21343-PA 7..436 4..436 1704 72.3 Plus
Dgri\GH21342-PA 475 GH21342-PA 33..467 4..434 1002 42.4 Plus
Dgri\GH13756-PA 458 GH13756-PA 6..436 10..434 968 41.5 Plus
Dgri\GH21344-PA 466 GH21344-PA 34..463 5..436 838 41.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PC 436 CG11474-PC 1..436 1..436 2297 100 Plus
CG11474-PA 436 CG11474-PA 1..436 1..436 2297 100 Plus
CG4161-PB 484 CG4161-PB 7..444 3..433 997 43.2 Plus
CG4161-PA 484 CG4161-PA 7..444 3..433 997 43.2 Plus
CG2921-PA 478 CG2921-PA 34..469 5..433 989 42 Plus
CG11475-PA 464 CG11475-PA 26..455 4..436 837 40.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20759-PA 437 GI20759-PA 9..437 6..436 1716 72.9 Plus
Dmoj\GI17896-PA 460 GI17896-PA 13..439 13..434 963 41.5 Plus
Dmoj\GI20758-PA 473 GI20758-PA 30..465 4..434 906 39.6 Plus
Dmoj\GI20761-PA 468 GI20761-PA 32..465 5..436 862 40.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17495-PA 438 GL17495-PA 6..438 4..436 1973 83.6 Plus
Dper\GL26427-PA 505 GL26427-PA 24..451 15..434 1005 41.4 Plus
Dper\GL17494-PA 488 GL17494-PA 38..480 4..434 1000 42.4 Plus
Dper\GL17496-PA 471 GL17496-PA 36..460 7..434 919 43.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11023-PA 438 GA11023-PA 6..438 4..436 1952 82.9 Plus
Dpse\GA17996-PA 503 GA17996-PA 24..451 15..434 1007 41.4 Plus
Dpse\GA15520-PA 480 GA15520-PA 38..472 4..434 1003 43 Plus
Dpse\GA11024-PA 471 GA11024-PA 36..460 7..434 914 43.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15668-PA 436 GM15668-PA 1..436 1..436 2252 96.3 Plus
Dsec\GM16086-PA 483 GM16086-PA 6..445 2..434 1020 43.4 Plus
Dsec\GM15666-PA 478 GM15666-PA 34..470 5..434 1008 41.4 Plus
Dsec\GM15669-PA 464 GM15669-PA 26..455 4..436 855 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25149-PA 436 GD25149-PA 1..436 1..436 2277 97 Plus
Dsim\GD25148-PA 478 GD25148-PA 34..470 5..434 1024 42.1 Plus
Dsim\GD24006-PA 483 GD24006-PA 6..445 2..434 1022 43.2 Plus
Dsim\GD25150-PA 424 GD25150-PA 26..415 4..436 688 35.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20495-PA 438 GJ20495-PA 14..438 11..436 1715 73 Plus
Dvir\GJ17401-PA 463 GJ17401-PA 13..440 13..434 983 41.8 Plus
Dvir\GJ20494-PA 472 GJ20494-PA 29..464 4..434 978 41 Plus
Dvir\GJ20496-PA 470 GJ20496-PA 31..467 2..436 895 41.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15629-PA 440 GK15629-PA 9..437 6..434 1827 77.2 Plus
Dwil\GK15628-PA 479 GK15628-PA 35..471 4..434 998 42.7 Plus
Dwil\GK18252-PA 503 GK18252-PA 23..459 14..434 995 42.3 Plus
Dwil\GK15630-PA 471 GK15630-PA 42..468 4..436 824 40.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13654-PA 436 GE13654-PA 1..436 1..436 2223 94.5 Plus
Dyak\GE13653-PA 476 GE13653-PA 34..468 5..434 1012 42.3 Plus
Dyak\GE20990-PA 484 GE20990-PA 17..445 13..434 982 42.9 Plus
Dyak\GE13655-PA 473 GE13655-PA 25..454 4..436 857 40 Plus