Clone LD03322 Report

Search the DGRC for LD03322

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:33
Well:22
Vector:pBS SK-
Associated Gene/TranscriptstmA-RA
Protein status:LD03322.pep: gold
Preliminary Size:2831
Sequenced Size:2741

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8739 2001-01-01 Release 2 assignment
CG8739 2001-10-10 Blastp of sequenced clone
stmA 2008-04-29 Release 5.5 accounting
stmA 2008-08-15 Release 5.9 accounting
stmA 2008-12-18 5.12 accounting

Clone Sequence Records

LD03322.complete Sequence

2741 bp (2741 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061062

> LD03322.complete
TCGGCCGAGAGTGTCTCATCCACGAAAGGAAAACAAAAGAAAAGTCGCGC
TGCGCTCTTTTATCGCTGCGTTTTATTATCTAATGCCGCGATAAACACCC
AGAGAAGCGAATCGCGACGCCAAAATGCCTGGCTGCTGTGGATGCTGCTC
AGCGCTCAGGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTA
ACCCTGAGGACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTAC
TCGCTGAGCTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCA
AAAGGCCACCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTG
CCATGGAGGCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACA
CTCAACTTGTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGA
GGACTCGAACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGT
TCGCCAACATCAACGAGGACACACCATCTTACCATCGACGATACGACTTC
TTCATCTCGAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCG
TGACAGTCTGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGA
AAACAGTGTCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATG
GAAAAGATTGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAAC
GCCCGTAGAGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAG
TTCTCCGTGAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTA
CTAAAGCCGCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAA
CACATTTGCCATTCACACATTCCGCATCGTGATGATCTCCATACAGCCAC
AGTACTCGTATACCGTTGTGGAGACGCTGATGCAGCATCTGGACAACAAC
TTCAAGTCCTCGCCGAAAACGCGCACTTCGCTCGCTGTCGTTCTGTCGAA
AATTATAGCTATTGCAGCGGGAGAAAGTGTCGGTCCCTCGGCCCTGGACA
TCATCAACAACCTGCTGACCCACCTGCGGACGAGTGTGAGCACTACCAGC
GAGATAACACCAGAGGAGTCACAATATCAGGAGGCGCTGATCAACGCACT
AGGCGAATTTGCCAACCATCATCCCGACTATCAAAAGATCGAGATCATGC
TGTTCATCATGAACACCGTGCCAGACCTGTCCAAGAAGAGCAAGGGAGAT
CAAATGCTGCAGAACATTCTGCTTAAATCACTGCTCAAGGTTGGCACTCA
GTACAGCACCGTCTCCTTCGAAAAGGCATTCCCCGCCTCCTTCCTGCAGC
CGCTGCTCAAGATGGCACGCGCTCCACACAATCCCACGCGCATGGTTGTG
ATGCAAATATTGCAGGCCCTTCTAGATCGTCATCAGAACGAGCAGGTGCT
CAGTAGCGTGAGTGTGAAGCCATACCCGGCTCTCTCCCAAGAGCCGCCGT
CGCGCTCCGACATAATTTTCACGCACAAATACGGCGCCAACATCATGCAG
GCGTTGATCGACTCCATGGCATTGTCGGATCGGGTTGACGCCCTGACCTC
CAGTTTTAATACCGCTGCTCTACTCATCGTGGAAATGTCCTGCAACGAGA
CCGTGCAAGAGTTTCTTCTGTTTATCCTCGGAATCCAGCAGGTAGCCTGC
ACCGTGGACACTCTGGGAAACGTGCACAAATGTAGTCTGCACGCCATCTC
AATTGGCCTGCTGGTGCTAATCTCGCGTGTTAGTGGCATCAACAACCTTC
TGGAGTATGCTCAAAAGATAGTGGACGCACGGCGCGAGGAGGCCAGCCAT
TTCCTTCCCCCACTGCTCGAGCCCAAGAAGCTAGCCGGAAAGACATTCAA
TCTACAGCTGCCGCACTTGGCCATAGATAAGTTGGCGCTGGGCGAGTGCT
TGCAGAACGCGGGCATGGACGCCCAACGCCTCAACACCGGTGCTCCGTAC
TCGCTTAACCAGACCGATCACCCAGGTCACCGCCACTCTTGGGTGGAGTC
GGTAAGCAACCAGCTGACGCAGCGCAACAGCTCAGCGGATCTGACGGTGT
ACAACGGCGATGTGGACAGCGTTAGCAGCTCGCCGGGAGTGTGCAAAAAG
CTCCTTGCGCCGGAGTTCAACTTCGATGCCATGAAGCGAGCACTGGCGGA
GCCAACTGAGGCCGCTAAGCGGGAGCAACGCGAGCGCCAGATGCAGATAG
TGCGCACCTTCCGCGAGGGCGAGTTTGACGACCTTATGAGACGCACAGAA
CCTAAGCACGATCTCATCCAGAACCGCCTTAACGAGCTTTTCAACTCGCT
AGCCGTGGAGCGTCAGATCACGCAAAGCGACACCAAGTCCAGTCAGTTGC
AAGCCAGCAATGAGAAGCCCATCTACGAGACGAACTTTCCGGAACTCTTC
TACTACTAAACCGTATCCCTCGAACCGAAAACGATATGCGGCGAATATTC
TCTAATCAATTCATGTATATCTATAGCTGAGAAAGCGAATTTGTTTGGTG
TCTGTATGGAACTAGGTAAATCTTATTAAATTTTTTGTTGTTAATTGCAA
ACAATTCAATTGTTAAACGACCCCGAATATGTACTTTGATTTAATTGTTA
GACAAATACATATATGTATACATAAAAAAAAAAAAAAAAAA

LD03322.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2795 stmA-RA 64..2787 1..2724 13620 100 Plus
stmA-RB 3140 stmA-RB 546..3138 132..2724 12965 100 Plus
stmA-RC 3162 stmA-RC 1160..3148 736..2724 9945 100 Plus
stmA-RC 3162 stmA-RC 514..1119 132..737 3030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4618300..4619163 1731..868 4320 100 Minus
chr2R 21145070 chr2R 4617615..4618240 2356..1731 3130 100 Minus
chr2R 21145070 chr2R 4617092..4617460 2723..2355 1845 100 Minus
chr2R 21145070 chr2R 4619711..4619957 736..490 1235 100 Minus
chr2R 21145070 chr2R 4620227..4620432 336..131 1030 100 Minus
chr2R 21145070 chr2R 4620016..4620169 490..337 770 100 Minus
chr2R 21145070 chr2R 4619232..4619364 867..735 665 100 Minus
chr2R 21145070 chr2R 4620852..4620983 132..1 645 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:49:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8730749..8731612 1731..868 4320 100 Minus
2R 25286936 2R 8730064..8730689 2356..1731 3130 100 Minus
2R 25286936 2R 8729512..8729881 2724..2355 1850 100 Minus
2R 25286936 2R 8732160..8732406 736..490 1235 100 Minus
2R 25286936 2R 8732676..8732881 336..131 1030 100 Minus
2R 25286936 2R 8732465..8732618 490..337 770 100 Minus
2R 25286936 2R 8731681..8731813 867..735 665 100 Minus
2R 25286936 2R 8733301..8733432 132..1 660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8731948..8732811 1731..868 4320 100 Minus
2R 25260384 2R 8731263..8731888 2356..1731 3130 100 Minus
2R 25260384 2R 8730711..8731080 2724..2355 1850 100 Minus
2R 25260384 2R 8733359..8733605 736..490 1235 100 Minus
2R 25260384 2R 8733875..8734080 336..131 1030 100 Minus
2R 25260384 2R 8733664..8733817 490..337 770 100 Minus
2R 25260384 2R 8732880..8733012 867..735 665 100 Minus
2R 25260384 2R 8734500..8734631 132..1 660 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:45:41 has no hits.

LD03322.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:46:32 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4617092..4617458 2357..2723 100 <- Minus
chr2R 4617615..4618239 1732..2356 100 <- Minus
chr2R 4618300..4619163 868..1731 100 <- Minus
chr2R 4619232..4619362 737..867 100 <- Minus
chr2R 4619711..4619956 491..736 100 <- Minus
chr2R 4620016..4620169 337..490 100 <- Minus
chr2R 4620227..4620431 132..336 100 <- Minus
chr2R 4620853..4620983 1..131 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:32:15 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 1..2385 125..2509 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:28 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 1..2385 125..2509 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:37 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 1..2385 125..2509 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:14 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 1..2385 125..2509 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:23 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 1..2385 125..2509 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:18 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 60..2782 1..2723 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:28 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 60..2782 1..2723 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:37 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 5..2727 1..2723 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:15 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 60..2782 1..2723 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:23 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 5..2727 1..2723 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:32 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8729513..8729879 2357..2723 100 <- Minus
2R 8730064..8730688 1732..2356 100 <- Minus
2R 8730749..8731612 868..1731 100 <- Minus
2R 8731681..8731811 737..867 100 <- Minus
2R 8732160..8732405 491..736 100 <- Minus
2R 8732465..8732618 337..490 100 <- Minus
2R 8732676..8732880 132..336 100 <- Minus
2R 8733302..8733432 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:32 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8729513..8729879 2357..2723 100 <- Minus
2R 8730064..8730688 1732..2356 100 <- Minus
2R 8730749..8731612 868..1731 100 <- Minus
2R 8731681..8731811 737..867 100 <- Minus
2R 8732160..8732405 491..736 100 <- Minus
2R 8732465..8732618 337..490 100 <- Minus
2R 8732676..8732880 132..336 100 <- Minus
2R 8733302..8733432 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:32 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8729513..8729879 2357..2723 100 <- Minus
2R 8730064..8730688 1732..2356 100 <- Minus
2R 8730749..8731612 868..1731 100 <- Minus
2R 8731681..8731811 737..867 100 <- Minus
2R 8732160..8732405 491..736 100 <- Minus
2R 8732465..8732618 337..490 100 <- Minus
2R 8732676..8732880 132..336 100 <- Minus
2R 8733302..8733432 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:37 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4620181..4620385 132..336 100 <- Minus
arm_2R 4620807..4620937 1..131 100   Minus
arm_2R 4619665..4619910 491..736 100 <- Minus
arm_2R 4619970..4620123 337..490 100 <- Minus
arm_2R 4617018..4617384 2357..2723 100 <- Minus
arm_2R 4617569..4618193 1732..2356 100 <- Minus
arm_2R 4618254..4619117 868..1731 100 <- Minus
arm_2R 4619186..4619316 737..867 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:06 Download gff for LD03322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8730712..8731078 2357..2723 100 <- Minus
2R 8731263..8731887 1732..2356 100 <- Minus
2R 8731948..8732811 868..1731 100 <- Minus
2R 8732880..8733010 737..867 100 <- Minus
2R 8733359..8733604 491..736 100 <- Minus
2R 8733664..8733817 337..490 100 <- Minus
2R 8733875..8734079 132..336 100 <- Minus
2R 8734501..8734631 1..131 100   Minus

LD03322.pep Sequence

Translation from 124 to 2508

> LD03322.pep
MPGCCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKL
DRIGEYLYQKATKDINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESF
LRMVQKLLEDSNPNLKIMATNSFVKFANINEDTPSYHRRYDFFISKFSSM
CHSDAASMRDSLRLAGIKGLQGVIRKTVSDDLVENIWEAEHMEKIVPSLL
FNMQSGDLTPVEDATNVTPPALAEEVLRELVGRASFGHIRSVLKPLLTHL
DRHELWVPNTFAIHTFRIVMISIQPQYSYTVVETLMQHLDNNFKSSPKTR
TSLAVVLSKIIAIAAGESVGPSALDIINNLLTHLRTSVSTTSEITPEESQ
YQEALINALGEFANHHPDYQKIEIMLFIMNTVPDLSKKSKGDQMLQNILL
KSLLKVGTQYSTVSFEKAFPASFLQPLLKMARAPHNPTRMVVMQILQALL
DRHQNEQVLSSVSVKPYPALSQEPPSRSDIIFTHKYGANIMQALIDSMAL
SDRVDALTSSFNTAALLIVEMSCNETVQEFLLFILGIQQVACTVDTLGNV
HKCSLHAISIGLLVLISRVSGINNLLEYAQKIVDARREEASHFLPPLLEP
KKLAGKTFNLQLPHLAIDKLALGECLQNAGMDAQRLNTGAPYSLNQTDHP
GHRHSWVESVSNQLTQRNSSADLTVYNGDVDSVSSSPGVCKKLLAPEFNF
DAMKRALAEPTEAAKREQRERQMQIVRTFREGEFDDLMRRTEPKHDLIQN
RLNELFNSLAVERQITQSDTKSSQLQASNEKPIYETNFPELFYY*

LD03322.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12566-PA 834 GF12566-PA 30..834 4..794 4106 95 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10618-PA 834 GG10618-PA 30..834 4..794 4175 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22694-PA 833 GH22694-PA 30..833 4..794 3898 90.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-PA 794 CG8739-PA 1..794 1..794 4045 100 Plus
stmA-PB 820 CG8739-PB 30..820 4..794 4027 100 Plus
stmA-PD 808 CG8739-PD 1..808 1..794 4020 98.3 Plus
stmA-PC 834 CG8739-PC 30..834 4..794 4002 98.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20622-PA 834 GI20622-PA 30..834 4..794 3975 91.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17359-PA 834 GL17359-PA 30..834 4..794 3973 92.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21293-PB 820 GA21293-PB 30..820 4..794 4006 93.9 Plus
Dpse\GA21293-PA 834 GA21293-PA 30..834 4..794 3978 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20664-PA 834 GM20664-PA 30..834 4..794 4216 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10138-PA 834 GD10138-PA 30..834 4..794 4216 98.1 Plus
Dsim\GD15267-PA 269 GD15267-PA 1..269 313..581 1409 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19662-PA 834 GJ19662-PA 27..834 2..794 3963 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20943-PA 834 GK20943-PA 36..834 10..794 3832 91.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22778-PA 834 GE22778-PA 30..834 4..794 4198 97.9 Plus

LD03322.hyp Sequence

Translation from 124 to 2508

> LD03322.hyp
MPGCCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKL
DRIGEYLYQKATKDINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESF
LRMVQKLLEDSNPNLKIMATNSFVKFANINEDTPSYHRRYDFFISKFSSM
CHSDAASMRDSLRLAGIKGLQGVIRKTVSDDLVENIWEAEHMEKIVPSLL
FNMQSGDLTPVEDATNVTPPALAEEVLRELVGRASFGHIRSVLKPLLTHL
DRHELWVPNTFAIHTFRIVMISIQPQYSYTVVETLMQHLDNNFKSSPKTR
TSLAVVLSKIIAIAAGESVGPSALDIINNLLTHLRTSVSTTSEITPEESQ
YQEALINALGEFANHHPDYQKIEIMLFIMNTVPDLSKKSKGDQMLQNILL
KSLLKVGTQYSTVSFEKAFPASFLQPLLKMARAPHNPTRMVVMQILQALL
DRHQNEQVLSSVSVKPYPALSQEPPSRSDIIFTHKYGANIMQALIDSMAL
SDRVDALTSSFNTAALLIVEMSCNETVQEFLLFILGIQQVACTVDTLGNV
HKCSLHAISIGLLVLISRVSGINNLLEYAQKIVDARREEASHFLPPLLEP
KKLAGKTFNLQLPHLAIDKLALGECLQNAGMDAQRLNTGAPYSLNQTDHP
GHRHSWVESVSNQLTQRNSSADLTVYNGDVDSVSSSPGVCKKLLAPEFNF
DAMKRALAEPTEAAKREQRERQMQIVRTFREGEFDDLMRRTEPKHDLIQN
RLNELFNSLAVERQITQSDTKSSQLQASNEKPIYETNFPELFYY*

LD03322.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-PA 794 CG8739-PA 1..794 1..794 4045 100 Plus
stmA-PB 820 CG8739-PB 30..820 4..794 4027 100 Plus
stmA-PD 808 CG8739-PD 1..808 1..794 4020 98.3 Plus
stmA-PC 834 CG8739-PC 30..834 4..794 4002 98.3 Plus